data_W3K
#
_chem_comp.id W3K
_chem_comp.name "N,N-dimethyl-4-(5-methyl-1H-benzimidazol-2-yl)aniline"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H17 N3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-09-16
_chem_comp.pdbx_modified_date 2024-10-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 251.326
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code W3K
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8WCI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
W3K CAA C1 C 0 1 N N N N N N 176.163 263.719 155.465 6.323 1.184 -0.005 CAA W3K 1
W3K CAB C2 C 0 1 Y N N N N N 176.612 262.430 155.210 5.003 0.458 -0.001 CAB W3K 2
W3K CAC C3 C 0 1 Y N N N N N 175.916 261.618 154.338 3.838 1.172 -0.003 CAC W3K 3
W3K CAD C4 C 0 1 Y N N N N N 176.325 260.383 154.076 2.610 0.503 0.000 CAD W3K 4
W3K CAF C5 C 0 1 Y N N N N N 177.749 261.922 155.817 4.982 -0.930 -0.001 CAF W3K 5
W3K CAG C6 C 0 1 Y N N N N N 178.127 260.620 155.509 3.783 -1.611 0.001 CAG W3K 6
W3K CAH C7 C 0 1 Y N N N N N 177.419 259.886 154.649 2.589 -0.903 0.005 CAH W3K 7
W3K CAJ C8 C 0 1 Y N N N N N 176.593 258.395 153.365 0.520 -0.116 0.003 CAJ W3K 8
W3K CAK C9 C 0 1 Y N N N N N 176.360 257.264 152.702 -0.956 -0.050 0.003 CAK W3K 9
W3K CAL C10 C 0 1 Y N N N N N 177.096 256.106 152.924 -1.601 1.188 -0.001 CAL W3K 10
W3K CAM C11 C 0 1 Y N N N N N 176.815 254.945 152.207 -2.977 1.246 -0.001 CAM W3K 11
W3K CAN C12 C 0 1 Y N N N N N 175.332 257.236 151.768 -1.709 -1.227 0.002 CAN W3K 12
W3K CAO C13 C 0 1 Y N N N N N 175.046 256.078 151.060 -3.085 -1.163 -0.003 CAO W3K 13
W3K CAP C14 C 0 1 Y N N N N N 175.788 254.925 151.275 -3.724 0.073 0.005 CAP W3K 14
W3K CAR C15 C 0 1 N N N N N N 174.486 253.869 149.537 -5.905 -1.100 -0.014 CAR W3K 15
W3K CAS C16 C 0 1 N N N N N N 176.253 252.589 150.898 -5.792 1.435 0.008 CAS W3K 16
W3K NAE N1 N 0 1 Y N N N N N 175.815 259.455 153.279 1.321 0.922 -0.001 NAE W3K 17
W3K NAI N2 N 0 1 Y N N N N N 177.579 258.643 154.209 1.257 -1.270 0.007 NAI W3K 18
W3K NAQ N3 N 0 1 N N N N N N 175.513 253.818 150.591 -5.117 0.135 -0.001 NAQ W3K 19
W3K H1 H1 H 0 1 N N N N N N 175.469 263.704 156.318 6.638 1.360 -1.033 H1 W3K 20
W3K H2 H2 H 0 1 N N N N N N 177.021 264.366 155.701 6.214 2.139 0.510 H2 W3K 21
W3K H3 H3 H 0 1 N N N N N N 175.644 264.109 154.577 7.072 0.579 0.506 H3 W3K 22
W3K H4 H4 H 0 1 N N N N N N 175.023 261.994 153.861 3.866 2.251 -0.007 H4 W3K 23
W3K H5 H5 H 0 1 N N N N N N 178.324 262.519 156.509 5.912 -1.480 -0.004 H5 W3K 24
W3K H6 H6 H 0 1 N N N N N N 179.006 260.197 155.972 3.773 -2.691 0.000 H6 W3K 25
W3K H7 H7 H 0 1 N N N N N N 177.890 256.106 153.656 -1.022 2.100 -0.005 H7 W3K 26
W3K H8 H8 H 0 1 N N N N N N 177.401 254.054 152.378 -3.477 2.204 -0.004 H8 W3K 27
W3K H9 H9 H 0 1 N N N N N N 174.748 258.127 151.591 -1.212 -2.186 0.005 H9 W3K 28
W3K H10 H10 H 0 1 N N N N N N 174.243 256.074 150.338 -3.667 -2.072 0.001 H10 W3K 29
W3K H11 H11 H 0 1 N N N N N N 174.066 254.884 149.483 -6.966 -0.854 -0.016 H11 W3K 30
W3K H12 H12 H 0 1 N N N N N N 174.940 253.608 148.570 -5.663 -1.676 -0.908 H12 W3K 31
W3K H13 H13 H 0 1 N N N N N N 173.685 253.152 149.771 -5.671 -1.690 0.872 H13 W3K 32
W3K H14 H14 H 0 1 N N N N N N 176.964 252.783 151.715 -5.964 1.748 1.037 H14 W3K 33
W3K H15 H15 H 0 1 N N N N N N 175.547 251.803 151.205 -5.168 2.172 -0.498 H15 W3K 34
W3K H16 H16 H 0 1 N N N N N N 176.803 252.259 150.004 -6.747 1.351 -0.511 H16 W3K 35
W3K H18 H18 H 0 1 N N N N N N 178.310 258.012 154.468 0.909 -2.175 0.010 H18 W3K 36
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
W3K CAR NAQ SING N N 1
W3K NAQ CAS SING N N 2
W3K NAQ CAP SING N N 3
W3K CAO CAP DOUB Y N 4
W3K CAO CAN SING Y N 5
W3K CAP CAM SING Y N 6
W3K CAN CAK DOUB Y N 7
W3K CAM CAL DOUB Y N 8
W3K CAK CAL SING Y N 9
W3K CAK CAJ SING N N 10
W3K NAE CAJ DOUB Y N 11
W3K NAE CAD SING Y N 12
W3K CAJ NAI SING Y N 13
W3K CAD CAC SING Y N 14
W3K CAD CAH DOUB Y N 15
W3K NAI CAH SING Y N 16
W3K CAC CAB DOUB Y N 17
W3K CAH CAG SING Y N 18
W3K CAB CAA SING N N 19
W3K CAB CAF SING Y N 20
W3K CAG CAF DOUB Y N 21
W3K CAA H1 SING N N 22
W3K CAA H2 SING N N 23
W3K CAA H3 SING N N 24
W3K CAC H4 SING N N 25
W3K CAF H5 SING N N 26
W3K CAG H6 SING N N 27
W3K CAL H7 SING N N 28
W3K CAM H8 SING N N 29
W3K CAN H9 SING N N 30
W3K CAO H10 SING N N 31
W3K CAR H11 SING N N 32
W3K CAR H12 SING N N 33
W3K CAR H13 SING N N 34
W3K CAS H14 SING N N 35
W3K CAS H15 SING N N 36
W3K CAS H16 SING N N 37
W3K NAI H18 SING N N 38
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
W3K InChI InChI 1.06 "InChI=1S/C16H17N3/c1-11-4-9-14-15(10-11)18-16(17-14)12-5-7-13(8-6-12)19(2)3/h4-10H,1-3H3,(H,17,18)"
W3K InChIKey InChI 1.06 DCBQWCSRVVGWAN-UHFFFAOYSA-N
W3K SMILES_CANONICAL CACTVS 3.385 "CN(C)c1ccc(cc1)c2[nH]c3ccc(C)cc3n2"
W3K SMILES CACTVS 3.385 "CN(C)c1ccc(cc1)c2[nH]c3ccc(C)cc3n2"
W3K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc2c(c1)nc([nH]2)c3ccc(cc3)N(C)C"
W3K SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc2c(c1)nc([nH]2)c3ccc(cc3)N(C)C"
#
_pdbx_chem_comp_identifier.comp_id W3K
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "~{N},~{N}-dimethyl-4-(5-methyl-1~{H}-benzimidazol-2-yl)aniline"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
W3K "Create component" 2023-09-16 PDBJ
W3K "Modify name" 2023-10-25 PDBJ
W3K "Modify linking type" 2023-10-25 PDBJ
W3K "Initial release" 2024-10-09 RCSB
#