data_W3N # _chem_comp.id W3N _chem_comp.name "1-[(1S)-1-[3-(1H-imidazol-4-yl)phenyl]ethyl]-5-(1H-indazol-7-yl)pyrimidine-2,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H18 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-04-26 _chem_comp.pdbx_modified_date 2023-06-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 398.417 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W3N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OVZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W3N C1 C1 C 0 1 N N S -4.063 -15.978 -20.866 1.126 -2.191 -0.548 C1 W3N 1 W3N C2 C2 C 0 1 Y N N -2.568 -15.690 -20.952 1.877 -1.169 0.266 C2 W3N 2 W3N C3 C3 C 0 1 Y N N -1.868 -16.081 -22.084 1.402 -0.791 1.509 C3 W3N 3 W3N C7 C4 C 0 1 Y N N -1.875 -15.052 -19.924 3.041 -0.616 -0.228 C7 W3N 4 W3N C8 C5 C 0 1 Y N N 0.216 -14.132 -18.925 4.986 0.928 -0.001 C8 W3N 5 W3N C9 C6 C 0 1 Y N N 1.544 -13.804 -18.824 5.757 1.855 0.626 C9 W3N 6 W3N C10 C7 C 0 1 Y N N 0.641 -13.131 -17.012 6.643 1.369 -1.318 C10 W3N 7 W3N C11 C8 C 0 1 N N N -5.246 -14.677 -19.109 -0.938 -0.885 -0.646 C11 W3N 8 W3N C12 C9 C 0 1 N N N -5.718 -14.458 -17.858 -2.276 -0.751 -0.419 C12 W3N 9 W3N C13 C10 C 0 1 N N N -5.477 -15.485 -16.843 -2.994 -1.873 0.199 C13 W3N 10 W3N C14 C11 C 0 1 N N N -4.298 -16.815 -18.570 -0.986 -3.068 0.256 C14 W3N 11 W3N C15 C12 C 0 1 Y N N -6.452 -13.204 -17.548 -2.986 0.498 -0.784 C15 W3N 12 W3N C16 C13 C 0 1 Y N N -7.563 -12.850 -18.319 -3.283 0.770 -2.113 C16 W3N 13 W3N C19 C14 C 0 1 Y N N -6.767 -11.133 -16.258 -4.043 2.589 -0.155 C19 W3N 14 W3N C20 C15 C 0 1 Y N N -6.066 -12.324 -16.522 -3.369 1.411 0.210 C20 W3N 15 W3N C21 C16 C 0 1 Y N N -6.072 -10.549 -15.169 -4.297 3.304 1.041 C21 W3N 16 W3N O1 O1 O 0 1 N N N -3.688 -17.833 -18.864 -0.386 -4.084 0.550 O1 W3N 17 W3N N2 N1 N 0 1 N N N -4.559 -15.810 -19.478 -0.312 -2.050 -0.302 N2 W3N 18 W3N C6 C17 C 0 1 Y N N -0.505 -14.807 -20.021 3.735 0.329 0.525 C6 W3N 19 W3N N1 N2 N 0 1 Y N N -0.345 -13.689 -17.749 5.561 0.654 -1.191 N1 W3N 20 W3N N N3 N 0 1 Y N N 1.804 -13.181 -17.627 6.802 2.128 -0.212 N W3N 21 W3N C5 C18 C 0 1 Y N N 0.173 -15.209 -21.166 3.249 0.711 1.774 C5 W3N 22 W3N C4 C19 C 0 1 Y N N -0.506 -15.841 -22.192 2.087 0.147 2.261 C4 W3N 23 W3N C C20 C 0 1 N N N -4.929 -15.219 -21.871 1.413 -1.971 -2.034 C W3N 24 W3N N3 N4 N 0 1 N N N -4.777 -16.591 -17.300 -2.304 -2.989 0.515 N3 W3N 25 W3N O O2 O 0 1 N N N -5.844 -15.429 -15.667 -4.189 -1.799 0.421 O W3N 26 W3N N4 N5 N 0 1 Y N N -5.050 -12.379 -15.627 -3.236 1.440 1.573 N4 W3N 27 W3N N5 N6 N 0 1 Y N N -5.050 -11.295 -14.798 -3.820 2.622 2.043 N5 W3N 28 W3N C18 C21 C 0 1 Y N N -7.877 -10.819 -17.048 -4.324 2.838 -1.506 C18 W3N 29 W3N C17 C22 C 0 1 Y N N -8.267 -11.678 -18.068 -3.949 1.936 -2.460 C17 W3N 30 W3N H1 H1 H 0 1 N N N -4.180 -17.044 -21.111 1.447 -3.192 -0.260 H1 W3N 31 W3N H2 H2 H 0 1 N N N -2.389 -16.577 -22.890 0.493 -1.229 1.893 H2 W3N 32 W3N H3 H3 H 0 1 N N N -2.408 -14.742 -19.037 3.414 -0.915 -1.197 H3 W3N 33 W3N H4 H4 H 0 1 N N N 2.285 -14.008 -19.583 5.579 2.290 1.597 H4 W3N 34 W3N H5 H5 H 0 1 N N N 0.493 -12.696 -16.035 7.306 1.356 -2.171 H5 W3N 35 W3N H6 H6 H 0 1 N N N -5.419 -13.919 -19.859 -0.379 -0.080 -1.098 H6 W3N 36 W3N H7 H7 H 0 1 N N N -7.880 -13.498 -19.123 -2.994 0.068 -2.882 H7 W3N 37 W3N H8 H8 H 0 1 N N N -6.345 -9.613 -14.703 -4.801 4.256 1.111 H8 W3N 38 W3N H10 H10 H 0 1 N N N 2.684 -12.840 -17.296 7.524 2.753 -0.044 H10 W3N 39 W3N H11 H11 H 0 1 N N N 1.234 -15.027 -21.255 3.783 1.443 2.362 H11 W3N 40 W3N H12 H12 H 0 1 N N N 0.026 -16.149 -23.080 1.711 0.438 3.230 H12 W3N 41 W3N H13 H13 H 0 1 N N N -5.984 -15.494 -21.728 1.092 -0.970 -2.322 H13 W3N 42 W3N H14 H14 H 0 1 N N N -4.808 -14.137 -21.715 2.482 -2.076 -2.217 H14 W3N 43 W3N H15 H15 H 0 1 N N N -4.617 -15.479 -22.893 0.869 -2.711 -2.622 H15 W3N 44 W3N H16 H16 H 0 1 N N N -4.600 -17.310 -16.628 -2.762 -3.742 0.920 H16 W3N 45 W3N H17 H17 H 0 1 N N N -4.383 -13.122 -15.580 -2.810 0.760 2.118 H17 W3N 46 W3N H18 H18 H 0 1 N N N -8.431 -9.910 -16.866 -4.841 3.742 -1.792 H18 W3N 47 W3N H19 H19 H 0 1 N N N -9.127 -11.432 -18.673 -4.173 2.134 -3.497 H19 W3N 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W3N C4 C3 DOUB Y N 1 W3N C4 C5 SING Y N 2 W3N C3 C2 SING Y N 3 W3N C C1 SING N N 4 W3N C5 C6 DOUB Y N 5 W3N C2 C1 SING N N 6 W3N C2 C7 DOUB Y N 7 W3N C1 N2 SING N N 8 W3N C6 C7 SING Y N 9 W3N C6 C8 SING N N 10 W3N N2 C11 SING N N 11 W3N N2 C14 SING N N 12 W3N C11 C12 DOUB N N 13 W3N C8 C9 DOUB Y N 14 W3N C8 N1 SING Y N 15 W3N O1 C14 DOUB N N 16 W3N C9 N SING Y N 17 W3N C14 N3 SING N N 18 W3N C16 C17 SING Y N 19 W3N C16 C15 DOUB Y N 20 W3N C17 C18 DOUB Y N 21 W3N C12 C15 SING N N 22 W3N C12 C13 SING N N 23 W3N N1 C10 DOUB Y N 24 W3N N C10 SING Y N 25 W3N C15 C20 SING Y N 26 W3N N3 C13 SING N N 27 W3N C18 C19 SING Y N 28 W3N C13 O DOUB N N 29 W3N C20 C19 DOUB Y N 30 W3N C20 N4 SING Y N 31 W3N C19 C21 SING Y N 32 W3N N4 N5 SING Y N 33 W3N C21 N5 DOUB Y N 34 W3N C1 H1 SING N N 35 W3N C3 H2 SING N N 36 W3N C7 H3 SING N N 37 W3N C9 H4 SING N N 38 W3N C10 H5 SING N N 39 W3N C11 H6 SING N N 40 W3N C16 H7 SING N N 41 W3N C21 H8 SING N N 42 W3N N H10 SING N N 43 W3N C5 H11 SING N N 44 W3N C4 H12 SING N N 45 W3N C H13 SING N N 46 W3N C H14 SING N N 47 W3N C H15 SING N N 48 W3N N3 H16 SING N N 49 W3N N4 H17 SING N N 50 W3N C18 H18 SING N N 51 W3N C17 H19 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W3N InChI InChI 1.06 "InChI=1S/C22H18N6O2/c1-13(14-4-2-5-15(8-14)19-10-23-12-24-19)28-11-18(21(29)26-22(28)30)17-7-3-6-16-9-25-27-20(16)17/h2-13H,1H3,(H,23,24)(H,25,27)(H,26,29,30)/t13-/m0/s1" W3N InChIKey InChI 1.06 RGEIAXNRJWEHFV-ZDUSSCGKSA-N W3N SMILES_CANONICAL CACTVS 3.385 "C[C@H](N1C=C(C(=O)NC1=O)c2cccc3cn[nH]c23)c4cccc(c4)c5c[nH]cn5" W3N SMILES CACTVS 3.385 "C[CH](N1C=C(C(=O)NC1=O)c2cccc3cn[nH]c23)c4cccc(c4)c5c[nH]cn5" W3N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc(c1)c2c[nH]cn2)N3C=C(C(=O)NC3=O)c4cccc5c4[nH]nc5" W3N SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc(c1)c2c[nH]cn2)N3C=C(C(=O)NC3=O)c4cccc5c4[nH]nc5" # _pdbx_chem_comp_identifier.comp_id W3N _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[(1~{S})-1-[3-(1~{H}-imidazol-4-yl)phenyl]ethyl]-5-(1~{H}-indazol-7-yl)pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W3N "Create component" 2023-04-26 PDBE W3N "Initial release" 2023-07-05 RCSB #