data_W3O # _chem_comp.id W3O _chem_comp.name "1-[3-[~{tert}-butyl(dimethyl)silyl]oxypropyl]pyridine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H27 N2 O2 Si" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2023-09-22 _chem_comp.pdbx_modified_date 2024-06-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 295.473 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W3O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UAS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W3O C10 C1 C 0 1 N N N N N N -30.254 26.735 126.677 -0.202 0.501 -0.058 C10 W3O 1 W3O C11 C2 C 0 1 N N N N N N -29.724 25.298 126.850 -1.266 1.014 -1.030 C11 W3O 2 W3O C13 C3 C 0 1 Y N N N N N -27.880 25.655 125.305 -2.990 2.037 0.292 C13 W3O 3 W3O C14 C4 C 0 1 Y N N N N N -27.085 25.264 124.227 -4.224 2.051 0.916 C14 W3O 4 W3O C15 C5 C 0 1 Y N N N N N -27.346 24.054 123.571 -5.038 0.935 0.832 C15 W3O 5 W3O C16 C6 C 0 1 Y N N N N N -28.420 23.274 124.038 -4.575 -0.172 0.112 C16 W3O 6 W3O C17 C7 C 0 1 N N N N N N -28.770 21.903 123.350 -5.404 -1.390 -0.010 C17 W3O 7 W3O C20 C8 C 0 1 Y N N N N N -29.177 23.715 125.116 -3.317 -0.106 -0.489 C20 W3O 8 W3O C01 C9 C 0 1 N N N N N N -33.072 28.530 123.083 4.817 0.309 2.076 C01 W3O 9 W3O C02 C10 C 0 1 N N N N N N -33.069 27.090 122.532 4.862 -0.593 0.841 C02 W3O 10 W3O C03 C11 C 0 1 N N N N N N -34.142 26.260 123.238 6.279 -0.600 0.265 C03 W3O 11 W3O C04 C12 C 0 1 N N N N N N -33.355 27.121 121.001 4.464 -2.017 1.235 C04 W3O 12 W3O C06 C13 C 0 1 N N N N N N -30.148 26.705 121.368 4.158 1.785 -0.921 C06 W3O 13 W3O C07 C14 C 0 1 N N N N N N -31.561 24.386 122.952 3.728 -1.047 -1.945 C07 W3O 14 W3O C09 C15 C 0 1 N N N N N N -31.336 26.811 125.553 1.169 0.538 -0.736 C09 W3O 15 W3O N12 N1 N 1 1 Y N N N N N -28.894 24.882 125.714 -2.579 0.979 -0.380 N12 W3O 16 W3O N18 N2 N 0 1 N N N N N N -27.731 21.134 122.667 -6.617 -1.441 0.575 N18 W3O 17 W3O O08 O1 O 0 1 N N N N N N -30.670 26.854 124.294 2.163 0.059 0.172 O08 W3O 18 W3O O19 O2 O 0 1 N N N N N N -29.883 21.498 123.387 -4.991 -2.346 -0.638 O19 W3O 19 W3O SI05 SI1 SI 0 0 N N N N N N -31.333 26.274 122.836 3.674 0.051 -0.442 SI05 W3O 20 W3O H101 H1 H 0 0 N N N N N N -29.416 27.396 126.412 -0.186 1.133 0.830 H101 W3O 21 W3O H102 H2 H 0 0 N N N N N N -30.699 27.069 127.626 -0.437 -0.524 0.231 H102 W3O 22 W3O H111 H3 H 0 0 N N N N N N -30.579 24.611 126.936 -1.031 2.039 -1.318 H111 W3O 23 W3O H112 H4 H 0 0 N N N N N N -29.120 25.249 127.768 -1.283 0.382 -1.917 H112 W3O 24 W3O H131 H5 H 0 0 N N N N N N -27.676 26.586 125.812 -2.355 2.908 0.352 H131 W3O 25 W3O H141 H6 H 0 0 N N N N N N -26.270 25.893 123.899 -4.549 2.924 1.464 H141 W3O 26 W3O H151 H7 H 0 0 N N N N N N -26.743 23.731 122.735 -6.007 0.919 1.311 H151 W3O 27 W3O H201 H8 H 0 0 N N N N N N -29.999 23.114 125.475 -2.946 -0.953 -1.047 H201 W3O 28 W3O H012 H9 H 0 0 N N N N N N -32.870 28.510 124.164 3.807 0.314 2.486 H012 W3O 29 W3O H011 H10 H 0 0 N N N N N N -32.293 29.118 122.576 5.512 -0.068 2.826 H011 W3O 30 W3O H013 H11 H 0 0 N N N N N N -34.055 28.990 122.902 5.101 1.323 1.795 H013 W3O 31 W3O H031 H12 H 0 0 N N N N N N -33.938 26.239 124.319 6.562 0.414 -0.016 H031 W3O 32 W3O H032 H13 H 0 0 N N N N N N -35.130 26.710 123.060 6.974 -0.977 1.015 H032 W3O 33 W3O H033 H14 H 0 0 N N N N N N -34.130 25.233 122.843 6.311 -1.243 -0.615 H033 W3O 34 W3O H043 H15 H 0 0 N N N N N N -34.337 27.582 120.820 4.496 -2.660 0.355 H043 W3O 35 W3O H042 H16 H 0 0 N N N N N N -32.575 27.709 120.494 5.159 -2.394 1.985 H042 W3O 36 W3O H041 H17 H 0 0 N N N N N N -33.354 26.094 120.607 3.454 -2.012 1.645 H041 W3O 37 W3O H061 H18 H 0 0 N N N N N N -29.165 26.242 121.541 5.168 1.780 -1.332 H061 W3O 38 W3O H062 H19 H 0 0 N N N N N N -30.573 26.321 120.429 3.463 2.162 -1.672 H062 W3O 39 W3O H063 H20 H 0 0 N N N N N N -30.032 27.797 121.299 4.126 2.428 -0.041 H063 W3O 40 W3O H071 H21 H 0 0 N N N N N N -32.235 24.148 123.788 3.444 -2.062 -1.665 H071 W3O 41 W3O H072 H22 H 0 0 N N N N N N -31.995 24.011 122.013 3.033 -0.670 -2.696 H072 W3O 42 W3O H073 H23 H 0 0 N N N N N N -30.585 23.909 123.121 4.738 -1.052 -2.356 H073 W3O 43 W3O H092 H24 H 0 0 N N N N N N -31.945 27.718 125.683 1.152 -0.095 -1.623 H092 W3O 44 W3O H091 H25 H 0 0 N N N N N N -31.985 25.924 125.601 1.404 1.562 -1.024 H091 W3O 45 W3O H182 H26 H 0 0 N N N N N N -27.959 20.264 122.230 -7.161 -2.240 0.495 H182 W3O 46 W3O H181 H27 H 0 0 N N N N N N -26.792 21.478 122.637 -6.946 -0.679 1.076 H181 W3O 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W3O C04 C02 SING N N 1 W3O C06 SI05 SING N N 2 W3O C02 SI05 SING N N 3 W3O C02 C01 SING N N 4 W3O C02 C03 SING N N 5 W3O N18 C17 SING N N 6 W3O SI05 C07 SING N N 7 W3O SI05 O08 SING N N 8 W3O C17 O19 DOUB N N 9 W3O C17 C16 SING N N 10 W3O C15 C16 DOUB Y N 11 W3O C15 C14 SING Y N 12 W3O C16 C20 SING Y N 13 W3O C14 C13 DOUB Y N 14 W3O O08 C09 SING N N 15 W3O C20 N12 DOUB Y N 16 W3O C13 N12 SING Y N 17 W3O C09 C10 SING N N 18 W3O N12 C11 SING N N 19 W3O C10 C11 SING N N 20 W3O C10 H101 SING N N 21 W3O C10 H102 SING N N 22 W3O C11 H111 SING N N 23 W3O C11 H112 SING N N 24 W3O C13 H131 SING N N 25 W3O C14 H141 SING N N 26 W3O C15 H151 SING N N 27 W3O C20 H201 SING N N 28 W3O C01 H012 SING N N 29 W3O C01 H011 SING N N 30 W3O C01 H013 SING N N 31 W3O C03 H031 SING N N 32 W3O C03 H032 SING N N 33 W3O C03 H033 SING N N 34 W3O C04 H043 SING N N 35 W3O C04 H042 SING N N 36 W3O C04 H041 SING N N 37 W3O C06 H061 SING N N 38 W3O C06 H062 SING N N 39 W3O C06 H063 SING N N 40 W3O C07 H071 SING N N 41 W3O C07 H072 SING N N 42 W3O C07 H073 SING N N 43 W3O C09 H092 SING N N 44 W3O C09 H091 SING N N 45 W3O N18 H182 SING N N 46 W3O N18 H181 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W3O SMILES ACDLabs 12.01 "O=C(N)c1ccc[n+](CCCO[Si](C)(C)C(C)(C)C)c1" W3O InChI InChI 1.06 "InChI=1S/C15H26N2O2Si/c1-15(2,3)20(4,5)19-11-7-10-17-9-6-8-13(12-17)14(16)18/h6,8-9,12H,7,10-11H2,1-5H3,(H-,16,18)/p+1" W3O InChIKey InChI 1.06 IGAWBMMYKICDLH-UHFFFAOYSA-O W3O SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)[Si](C)(C)OCCC[n+]1cccc(c1)C(N)=O" W3O SMILES CACTVS 3.385 "CC(C)(C)[Si](C)(C)OCCC[n+]1cccc(c1)C(N)=O" W3O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)[Si](C)(C)OCCC[n+]1cccc(c1)C(=O)N" W3O SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)[Si](C)(C)OCCC[n+]1cccc(c1)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier W3O "SYSTEMATIC NAME" ACDLabs 12.01 "1-(3-{[tert-butyl(dimethyl)silyl]oxy}propyl)-3-carbamoylpyridin-1-ium" W3O "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[3-[~{tert}-butyl(dimethyl)silyl]oxypropyl]pyridin-1-ium-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W3O "Create component" 2023-09-22 RCSB W3O "Initial release" 2024-07-03 RCSB #