data_W3T # _chem_comp.id W3T _chem_comp.name "1-[(1~{S},5~{R})-3-[7-(8-ethynyl-7-fluoranyl-3-oxidanyl-naphthalen-1-yl)-8-fluoranyl-2-[[(2~{R},8~{S})-2-fluoranyl-1,2,3,5,6,7-hexahydropyrrolizin-8-yl]methoxy]pyrido[4,3-d]pyrimidin-4-yl]-3,8-diazabicyclo[3.2.1]octan-8-yl]ethanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H33 F3 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-19 _chem_comp.pdbx_modified_date 2024-10-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 642.670 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W3T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8WB1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W3T N13 N1 N 0 1 N N N N N N 7.085 0.395 -22.698 -3.593 3.983 0.067 N13 W3T 1 W3T C14 C1 C 0 1 N N N N N N 7.947 -0.806 -22.853 -4.513 4.965 -0.014 C14 W3T 2 W3T O24 O1 O 0 1 N N N N N N 7.456 -1.894 -22.871 -4.784 5.455 -1.090 O24 W3T 3 W3T C26 C2 C 0 1 N N N N N N 5.535 1.231 -21.491 -3.046 1.783 0.825 C26 W3T 4 W3T C28 C3 C 0 1 N N N N N N 5.057 0.693 -23.805 -1.680 3.737 1.543 C28 W3T 5 W3T C29 C4 C 0 1 Y N N N N N 3.129 3.141 -24.211 0.624 1.396 0.525 C29 W3T 6 W3T C31 C5 C 0 1 Y N N N N N 0.980 4.138 -24.119 2.003 -0.593 0.625 C31 W3T 7 W3T C39 C6 C 0 1 Y N N N N N -3.048 3.025 -21.759 5.866 0.093 -2.444 C39 W3T 8 W3T C41 C7 C 0 1 Y N N N N N -4.337 3.316 -22.213 7.130 -0.460 -2.261 C41 W3T 9 W3T C43 C8 C 0 1 Y N N N N N -3.421 3.487 -24.478 6.622 -0.932 0.036 C43 W3T 10 W3T C49 C9 C 0 1 Y N N N N N 2.495 2.002 -24.858 1.778 2.161 0.719 C49 W3T 11 W3T C02 C10 C 0 1 N N R N N N 5.189 9.867 -21.412 -5.563 -4.023 1.065 C02 W3T 12 W3T C03 C11 C 0 1 N N N N N N 5.723 8.444 -20.936 -4.774 -2.701 0.878 C03 W3T 13 W3T C04 C12 C 0 1 N N S N N N 6.573 8.002 -21.958 -3.794 -3.036 -0.265 C04 W3T 14 W3T C05 C13 C 0 1 N N N N N N 6.262 6.496 -22.298 -2.449 -2.338 -0.053 C05 W3T 15 W3T C07 C14 C 0 1 Y N N N N N 4.244 5.347 -23.032 -1.548 -0.154 0.164 C07 W3T 16 W3T C09 C15 C 0 1 Y N N N N N 4.561 3.228 -23.934 -0.659 1.975 0.376 C09 W3T 17 W3T C11 C16 C 0 1 N N N N N N 7.085 2.387 -23.893 -1.354 3.842 -0.864 C11 W3T 18 W3T C12 C17 C 0 1 N N R N N N 7.505 1.593 -22.668 -2.806 3.362 -1.028 C12 W3T 19 W3T C15 C18 C 0 1 N N N N N N 9.455 -0.621 -22.964 -5.204 5.456 1.232 C15 W3T 20 W3T C25 C19 C 0 1 N N S N N N 5.759 0.255 -22.551 -3.117 3.262 1.275 C25 W3T 21 W3T C27 C20 C 0 1 N N N N N N 6.617 2.215 -21.385 -2.839 1.850 -0.703 C27 W3T 22 W3T C30 C21 C 0 1 Y N N N N N 2.359 4.200 -23.858 0.731 -0.018 0.478 C30 W3T 23 W3T C33 C22 C 0 1 Y N N N N N 0.401 2.978 -24.717 3.091 0.248 0.808 C33 W3T 24 W3T C34 C23 C 0 1 Y N N N N N -1.078 3.143 -24.996 4.442 -0.337 0.965 C34 W3T 25 W3T C35 C24 C 0 1 Y N N N N N -2.151 3.215 -24.029 5.334 -0.370 -0.130 C35 W3T 26 W3T C36 C25 C 0 1 Y N N N N N -1.944 2.975 -22.634 4.961 0.148 -1.392 C36 W3T 27 W3T C37 C26 C 0 1 N N N N N N -0.618 2.645 -21.988 3.663 0.723 -1.583 C37 W3T 28 W3T C38 C27 C 0 1 N N N N N N 0.407 2.389 -21.455 2.599 1.194 -1.740 C38 W3T 29 W3T C42 C28 C 0 1 Y N N N N N -4.543 3.541 -23.563 7.510 -0.964 -1.055 C42 W3T 30 W3T C44 C29 C 0 1 Y N N N N N -3.705 3.725 -25.862 6.997 -1.447 1.288 C44 W3T 31 W3T C45 C30 C 0 1 Y N N N N N -2.647 3.689 -26.773 6.113 -1.401 2.343 C45 W3T 32 W3T C47 C31 C 0 1 Y N N N N N -1.339 3.413 -26.332 4.842 -0.849 2.187 C47 W3T 33 W3T C52 C32 C 0 1 N N N N N N 7.764 9.220 -23.775 -4.131 -4.997 -1.605 C52 W3T 34 W3T C53 C33 C 0 1 N N N N N N 8.792 8.644 -22.985 -5.122 -3.911 -2.093 C53 W3T 35 W3T C54 C34 C 0 1 N N N N N N 8.087 8.180 -21.579 -4.429 -2.612 -1.605 C54 W3T 36 W3T C55 C35 C 0 1 N N N N N N 5.010 9.745 -22.693 -4.466 -5.082 0.792 C55 W3T 37 W3T F01 F1 F 0 1 N N N N N N 6.231 10.811 -21.142 -6.600 -4.124 0.132 F01 W3T 38 W3T F32 F2 F 0 1 N N N N N N 0.221 5.225 -23.734 2.164 -1.934 0.588 F32 W3T 39 W3T F40 F3 F 0 1 N N N N N N -2.799 2.792 -20.435 5.518 0.584 -3.653 F40 W3T 40 W3T N08 N2 N 0 1 Y N N N N N 5.050 4.328 -23.347 -1.695 1.166 0.201 N08 W3T 41 W3T N10 N3 N 0 1 N N N N N N 5.527 2.132 -24.225 -0.827 3.342 0.413 N10 W3T 42 W3T N48 N4 N 0 1 Y N N N N N 1.175 1.941 -25.113 2.945 1.574 0.851 N48 W3T 43 W3T N50 N5 N 0 1 Y N N N N N 2.929 5.311 -23.247 -0.376 -0.747 0.297 N50 W3T 44 W3T N51 N6 N 0 1 N N N N N N 6.302 8.878 -23.125 -3.648 -4.507 -0.297 N51 W3T 45 W3T O06 O2 O 0 1 N N N N N N 4.824 6.510 -22.406 -2.646 -0.924 -0.018 O06 W3T 46 W3T O46 O3 O 0 1 N N N N N N -2.893 3.910 -28.117 6.485 -1.898 3.552 O46 W3T 47 W3T H1 H1 H 0 1 N N N N N N 4.595 1.764 -21.697 -2.204 1.282 1.301 H1 W3T 48 W3T H2 H2 H 0 1 N N N N N N 5.451 0.696 -20.533 -3.977 1.268 1.060 H2 W3T 49 W3T H3 H3 H 0 1 N N N N N N 3.972 0.704 -23.627 -1.668 4.822 1.647 H3 W3T 50 W3T H4 H4 H 0 1 N N N N N N 5.288 -0.014 -24.615 -1.309 3.279 2.460 H4 W3T 51 W3T H5 H5 H 0 1 N N N N N N -5.163 3.365 -21.519 7.822 -0.489 -3.091 H5 W3T 52 W3T H6 H6 H 0 1 N N N N N N 3.114 1.165 -25.147 1.709 3.239 0.761 H6 W3T 53 W3T H7 H7 H 0 1 N N N N N N 4.271 10.112 -20.858 -5.945 -4.110 2.082 H7 W3T 54 W3T H8 H8 H 0 1 N N N N N N 4.885 7.744 -20.803 -5.444 -1.891 0.586 H8 W3T 55 W3T H9 H9 H 0 1 N N N N N N 6.276 8.538 -19.990 -4.234 -2.442 1.789 H9 W3T 56 W3T H10 H10 H 0 1 N N N N N N 6.597 5.826 -21.492 -2.013 -2.668 0.891 H10 W3T 57 W3T H11 H11 H 0 1 N N N N N N 6.732 6.194 -23.245 -1.775 -2.591 -0.872 H11 W3T 58 W3T H12 H12 H 0 1 N N N N N N 7.694 2.074 -24.754 -0.748 3.458 -1.685 H12 W3T 59 W3T H13 H13 H 0 1 N N N N N N 7.244 3.459 -23.702 -1.328 4.932 -0.870 H13 W3T 60 W3T H14 H14 H 0 1 N N N N N N 8.578 1.718 -22.459 -3.210 3.595 -2.013 H14 W3T 61 W3T H15 H15 H 0 1 N N N N N N 9.940 -1.604 -23.055 -4.632 6.276 1.666 H15 W3T 62 W3T H16 H16 H 0 1 N N N N N N 9.686 -0.015 -23.853 -6.205 5.805 0.979 H16 W3T 63 W3T H17 H17 H 0 1 N N N N N N 9.829 -0.110 -22.065 -5.274 4.641 1.953 H17 W3T 64 W3T H18 H18 H 0 1 N N N N N N 5.447 -0.756 -22.251 -3.770 3.414 2.134 H18 W3T 65 W3T H19 H19 H 0 1 N N N N N N 7.153 2.162 -20.426 -1.895 1.381 -0.980 H19 W3T 66 W3T H20 H20 H 0 1 N N N N N N 6.277 3.247 -21.558 -3.670 1.369 -1.220 H20 W3T 67 W3T H21 H21 H 0 1 N N N N N N 1.325 2.160 -20.978 1.648 1.615 -1.880 H21 W3T 68 W3T H22 H22 H 0 1 N N N N N N -5.535 3.756 -23.932 8.494 -1.392 -0.936 H22 W3T 69 W3T H23 H23 H 0 1 N N N N N N -4.713 3.927 -26.193 7.978 -1.879 1.423 H23 W3T 70 W3T H24 H24 H 0 1 N N N N N N -0.527 3.411 -27.044 4.163 -0.822 3.027 H24 W3T 71 W3T H25 H25 H 0 1 N N N N N N 7.815 8.810 -24.794 -4.642 -5.953 -1.487 H25 W3T 72 W3T H26 H26 H 0 1 N N N N N N 7.900 10.311 -23.812 -3.300 -5.094 -2.304 H26 W3T 73 W3T H27 H27 H 0 1 N N N N N N 9.225 7.773 -23.499 -5.211 -3.923 -3.179 H27 W3T 74 W3T H28 H28 H 0 1 N N N N N N 9.582 9.384 -22.789 -6.098 -4.034 -1.622 H28 W3T 75 W3T H29 H29 H 0 1 N N N N N N 8.515 7.232 -21.220 -5.161 -1.820 -1.451 H29 W3T 76 W3T H30 H30 H 0 1 N N N N N N 8.209 8.953 -20.806 -3.661 -2.297 -2.312 H30 W3T 77 W3T H31 H31 H 0 1 N N N N N N 5.001 10.726 -23.191 -3.857 -5.237 1.683 H31 W3T 78 W3T H32 H32 H 0 1 N N N N N N 4.075 9.210 -22.918 -4.917 -6.023 0.474 H32 W3T 79 W3T H34 H34 H 0 1 N N N N N N -3.819 4.081 -28.246 6.275 -2.834 3.674 H34 W3T 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W3T O46 C45 SING N N 1 W3T C45 C47 DOUB Y N 2 W3T C45 C44 SING Y N 3 W3T C47 C34 SING Y N 4 W3T C44 C43 DOUB Y N 5 W3T N48 C49 DOUB Y N 6 W3T N48 C33 SING Y N 7 W3T C34 C33 SING N N 8 W3T C34 C35 DOUB Y N 9 W3T C49 C29 SING Y N 10 W3T C33 C31 DOUB Y N 11 W3T C43 C35 SING Y N 12 W3T C43 C42 SING Y N 13 W3T N10 C09 SING N N 14 W3T N10 C11 SING N N 15 W3T N10 C28 SING N N 16 W3T C29 C09 DOUB Y N 17 W3T C29 C30 SING Y N 18 W3T C31 C30 SING Y N 19 W3T C31 F32 SING N N 20 W3T C35 C36 SING Y N 21 W3T C09 N08 SING Y N 22 W3T C11 C12 SING N N 23 W3T C30 N50 DOUB Y N 24 W3T C28 C25 SING N N 25 W3T C52 N51 SING N N 26 W3T C52 C53 SING N N 27 W3T C42 C41 DOUB Y N 28 W3T N08 C07 DOUB Y N 29 W3T N50 C07 SING Y N 30 W3T N51 C55 SING N N 31 W3T N51 C04 SING N N 32 W3T C07 O06 SING N N 33 W3T C53 C54 SING N N 34 W3T C15 C14 SING N N 35 W3T O24 C14 DOUB N N 36 W3T C14 N13 SING N N 37 W3T N13 C12 SING N N 38 W3T N13 C25 SING N N 39 W3T C55 C02 SING N N 40 W3T C12 C27 SING N N 41 W3T C36 C37 SING N N 42 W3T C36 C39 DOUB Y N 43 W3T C25 C26 SING N N 44 W3T O06 C05 SING N N 45 W3T C05 C04 SING N N 46 W3T C41 C39 SING Y N 47 W3T C37 C38 TRIP N N 48 W3T C04 C54 SING N N 49 W3T C04 C03 SING N N 50 W3T C39 F40 SING N N 51 W3T C26 C27 SING N N 52 W3T C02 F01 SING N N 53 W3T C02 C03 SING N N 54 W3T C26 H1 SING N N 55 W3T C26 H2 SING N N 56 W3T C28 H3 SING N N 57 W3T C28 H4 SING N N 58 W3T C41 H5 SING N N 59 W3T C49 H6 SING N N 60 W3T C02 H7 SING N N 61 W3T C03 H8 SING N N 62 W3T C03 H9 SING N N 63 W3T C05 H10 SING N N 64 W3T C05 H11 SING N N 65 W3T C11 H12 SING N N 66 W3T C11 H13 SING N N 67 W3T C12 H14 SING N N 68 W3T C15 H15 SING N N 69 W3T C15 H16 SING N N 70 W3T C15 H17 SING N N 71 W3T C25 H18 SING N N 72 W3T C27 H19 SING N N 73 W3T C27 H20 SING N N 74 W3T C38 H21 SING N N 75 W3T C42 H22 SING N N 76 W3T C44 H23 SING N N 77 W3T C47 H24 SING N N 78 W3T C52 H25 SING N N 79 W3T C52 H26 SING N N 80 W3T C53 H27 SING N N 81 W3T C53 H28 SING N N 82 W3T C54 H29 SING N N 83 W3T C54 H30 SING N N 84 W3T C55 H31 SING N N 85 W3T C55 H32 SING N N 86 W3T O46 H34 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W3T InChI InChI 1.06 "InChI=1S/C35H33F3N6O3/c1-3-25-28(37)8-5-20-11-24(46)12-26(29(20)25)31-30(38)32-27(14-39-31)33(42-16-22-6-7-23(17-42)44(22)19(2)45)41-34(40-32)47-18-35-9-4-10-43(35)15-21(36)13-35/h1,5,8,11-12,14,21-23,46H,4,6-7,9-10,13,15-18H2,2H3/t21-,22-,23+,35+/m1/s1" W3T InChIKey InChI 1.06 WZSXTLIRLWGGQT-BEOMGMIOSA-N W3T SMILES_CANONICAL CACTVS 3.385 "CC(=O)N1[C@H]2CC[C@@H]1CN(C2)c3nc(OC[C@@]45CCCN4C[C@H](F)C5)nc6c(F)c(ncc36)c7cc(O)cc8ccc(F)c(C#C)c78" W3T SMILES CACTVS 3.385 "CC(=O)N1[CH]2CC[CH]1CN(C2)c3nc(OC[C]45CCCN4C[CH](F)C5)nc6c(F)c(ncc36)c7cc(O)cc8ccc(F)c(C#C)c78" W3T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N1[C@@H]2CC[C@H]1CN(C2)c3c4cnc(c(c4nc(n3)OC[C@@]56CCCN5C[C@@H](C6)F)F)c7cc(cc8c7c(c(cc8)F)C#C)O" W3T SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)N1C2CCC1CN(C2)c3c4cnc(c(c4nc(n3)OCC56CCCN5CC(C6)F)F)c7cc(cc8c7c(c(cc8)F)C#C)O" # _pdbx_chem_comp_identifier.comp_id W3T _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[(1~{S},5~{R})-3-[7-(8-ethynyl-7-fluoranyl-3-oxidanyl-naphthalen-1-yl)-8-fluoranyl-2-[[(2~{R},8~{S})-2-fluoranyl-1,2,3,5,6,7-hexahydropyrrolizin-8-yl]methoxy]pyrido[4,3-d]pyrimidin-4-yl]-3,8-diazabicyclo[3.2.1]octan-8-yl]ethanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W3T "Create component" 2023-09-19 PDBJ W3T "Initial release" 2024-09-11 RCSB W3T "Initial release" 2024-09-27 RCSB W3T "Modify coordinates" 2024-09-27 PDBJ W3T "Modify PCM" 2024-10-02 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id W3T _pdbx_chem_comp_pcm.modified_residue_id ASP _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C15 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OD2 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #