data_W53 # _chem_comp.id W53 _chem_comp.name "3-(7-azanyl-1,8-naphthyridin-2-yl)-2-[(7-azanyl-1,8-naphthyridin-2-yl)methyl]-~{N}-(3-azanylpropyl)propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H26 N8 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-25 _chem_comp.pdbx_modified_date 2024-04-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 430.506 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W53 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QMH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W53 C8 C1 C 0 1 N N N N N N -26.227 5.110 -8.973 0.103 0.333 -1.914 C8 W53 1 W53 N7 N1 N 0 1 N N N N N N -23.597 -1.505 -6.041 5.484 -1.477 3.018 N7 W53 2 W53 C5 C2 C 0 1 Y N N N N N -26.712 6.010 -5.393 -2.719 -2.080 -2.503 C5 W53 3 W53 C6 C3 C 0 1 Y N N N N N -26.644 6.149 -6.736 -1.807 -1.079 -2.694 C6 W53 4 W53 N6 N2 N 0 1 Y N N N N N -23.630 0.654 -6.856 4.118 -0.189 1.635 N6 W53 5 W53 N1 N3 N 0 1 Y N N N N N -26.874 2.387 -5.200 -1.729 -3.054 0.876 N1 W53 6 W53 C2 C4 C 0 1 Y N N N N N -26.766 4.723 -4.815 -2.702 -2.768 -1.279 C2 W53 7 W53 N3 N4 N 0 1 N N N N N N -25.279 7.786 -10.356 -1.986 2.363 0.306 N3 W53 8 W53 C4 C5 C 0 1 Y N N N N N -26.945 3.193 -2.953 -3.539 -4.435 0.199 C4 W53 9 W53 N N5 N 0 1 N N N N N N -27.034 0.833 -3.504 -2.513 -4.672 2.360 N W53 10 W53 C C6 C 0 1 Y N N N N N -26.953 2.112 -3.867 -2.576 -4.030 1.134 C W53 11 W53 C1 C7 C 0 1 Y N N N N N -26.770 3.661 -5.697 -1.752 -2.405 -0.294 C1 W53 12 W53 C14 C8 C 0 1 N N N N N N -23.696 4.806 -9.056 1.089 2.414 -0.945 C14 W53 13 W53 C15 C9 C 0 1 Y N N N N N -23.598 4.039 -7.762 2.439 1.767 -0.778 C15 W53 14 W53 C16 C10 C 0 1 Y N N N N N -23.586 2.020 -6.717 3.875 0.498 0.513 C16 W53 15 W53 C17 C11 C 0 1 Y N N N N N -23.520 2.578 -5.443 4.881 0.600 -0.478 C17 W53 16 W53 C18 C12 C 0 1 Y N N N N N -23.538 1.703 -4.331 6.126 -0.026 -0.268 C18 W53 17 W53 C19 C13 C 0 1 Y N N N N N -23.604 0.354 -4.498 6.314 -0.712 0.895 C19 W53 18 W53 C20 C14 C 0 1 Y N N N N N -23.638 -0.196 -5.791 5.280 -0.777 1.840 C20 W53 19 W53 C21 C15 C 0 1 Y N N N N N -23.482 3.988 -5.388 4.615 1.323 -1.653 C21 W53 20 W53 C22 C16 C 0 1 Y N N N N N -23.517 4.712 -6.542 3.385 1.904 -1.789 C22 W53 21 W53 C3 C17 C 0 1 Y N N N N N -26.849 4.461 -3.428 -3.611 -3.811 -1.011 C3 W53 22 W53 C7 C18 C 0 1 Y N N N N N -26.607 5.009 -7.526 -0.895 -0.774 -1.688 C7 W53 23 W53 C9 C19 C 0 1 N N N N N N -24.870 5.787 -9.132 -0.006 1.357 -0.783 C9 W53 24 W53 N2 N6 N 0 1 Y N N N N N -26.688 3.785 -7.030 -0.888 -1.415 -0.544 N2 W53 25 W53 N5 N7 N 0 1 Y N N N N N -23.640 2.720 -7.858 2.692 1.090 0.317 N5 W53 26 W53 O O1 O 0 1 N N N N N N -24.439 6.002 -11.465 -1.880 2.250 -1.907 O W53 27 W53 C10 C20 C 0 1 N N N N N N -24.873 6.516 -10.433 -1.358 2.022 -0.836 C10 W53 28 W53 C11 C21 C 0 1 N N N N N N -24.759 8.707 -9.349 -3.345 2.908 0.260 C11 W53 29 W53 C12 C22 C 0 1 N N N N N N -25.866 9.464 -8.617 -3.781 3.311 1.671 C12 W53 30 W53 C13 C23 C 0 1 N N N N N N -25.829 9.393 -7.098 -5.238 3.778 1.640 C13 W53 31 W53 N4 N8 N 0 1 N N N N N N -24.474 9.383 -6.569 -5.623 4.268 2.970 N4 W53 32 W53 H8 H1 H 0 1 N N N N N N -26.178 4.099 -9.404 1.110 -0.084 -1.931 H8 W53 33 W53 H7 H2 H 0 1 N N N N N N -26.988 5.699 -9.505 -0.105 0.820 -2.867 H7 W53 34 W53 H24 H3 H 0 1 N N N N N N -23.565 -1.655 -7.029 4.806 -1.466 3.712 H24 W53 35 W53 H25 H4 H 0 1 N N N N N N -22.782 -1.900 -5.618 6.304 -1.977 3.149 H25 W53 36 W53 H5 H5 H 0 1 N N N N N N -26.725 6.885 -4.761 -3.435 -2.332 -3.272 H5 W53 37 W53 H6 H6 H 0 1 N N N N N N -26.619 7.130 -7.186 -1.794 -0.527 -3.622 H6 W53 38 W53 H10 H7 H 0 1 N N N N N N -25.961 8.117 -11.009 -1.538 2.248 1.159 H10 W53 39 W53 H4 H8 H 0 1 N N N N N N -27.014 3.011 -1.891 -4.221 -5.238 0.436 H4 W53 40 W53 H1 H9 H 0 1 N N N N N N -27.023 0.253 -4.319 -1.851 -4.402 3.016 H1 W53 41 W53 H H10 H 0 1 N N N N N N -26.256 0.602 -2.920 -3.130 -5.392 2.563 H W53 42 W53 H19 H11 H 0 1 N N N N N N -23.802 4.081 -9.877 0.961 3.188 -0.188 H19 W53 43 W53 H20 H12 H 0 1 N N N N N N -22.764 5.376 -9.188 1.019 2.860 -1.937 H20 W53 44 W53 H21 H13 H 0 1 N N N N N N -23.499 2.113 -3.333 6.909 0.035 -1.008 H21 W53 45 W53 H22 H14 H 0 1 N N N N N N -23.630 -0.295 -3.635 7.256 -1.203 1.088 H22 W53 46 W53 H26 H15 H 0 1 N N N N N N -23.425 4.491 -4.434 5.363 1.418 -2.427 H26 W53 47 W53 H27 H16 H 0 1 N N N N N N -23.483 5.791 -6.513 3.147 2.467 -2.680 H27 W53 48 W53 H3 H17 H 0 1 N N N N N N -26.836 5.287 -2.732 -4.346 -4.108 -1.744 H3 W53 49 W53 H9 H18 H 0 1 N N N N N N -24.755 6.520 -8.320 0.113 0.853 0.176 H9 W53 50 W53 H12 H19 H 0 1 N N N N N N -24.179 8.132 -8.612 -3.364 3.783 -0.390 H12 W53 51 W53 H11 H20 H 0 1 N N N N N N -24.102 9.437 -9.845 -4.027 2.152 -0.128 H11 W53 52 W53 H14 H21 H 0 1 N N N N N N -25.798 10.523 -8.906 -3.688 2.455 2.338 H14 W53 53 W53 H13 H22 H 0 1 N N N N N N -26.831 9.054 -8.950 -3.147 4.122 2.029 H13 W53 54 W53 H15 H23 H 0 1 N N N N N N -26.359 10.267 -6.692 -5.347 4.580 0.911 H15 W53 55 W53 H16 H24 H 0 1 N N N N N N -26.339 8.473 -6.776 -5.881 2.943 1.361 H16 W53 56 W53 H17 H25 H 0 1 N N N N N N -24.506 9.336 -5.571 -6.596 4.533 2.990 H17 W53 57 W53 H18 H26 H 0 1 N N N N N N -23.983 8.588 -6.925 -5.420 3.582 3.682 H18 W53 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W53 N C SING N N 1 W53 C N1 DOUB Y N 2 W53 N1 C1 SING Y N 3 W53 C1 C2 DOUB Y N 4 W53 C3 C2 SING Y N 5 W53 C4 C3 DOUB Y N 6 W53 C C4 SING Y N 7 W53 C2 C5 SING Y N 8 W53 C5 C6 DOUB Y N 9 W53 C6 C7 SING Y N 10 W53 N2 C7 DOUB Y N 11 W53 C1 N2 SING Y N 12 W53 C7 C8 SING N N 13 W53 C8 C9 SING N N 14 W53 C9 C10 SING N N 15 W53 C10 O DOUB N N 16 W53 N3 C10 SING N N 17 W53 C11 N3 SING N N 18 W53 C12 C11 SING N N 19 W53 C13 C12 SING N N 20 W53 N4 C13 SING N N 21 W53 C14 C9 SING N N 22 W53 C15 C14 SING N N 23 W53 C15 N5 DOUB Y N 24 W53 N5 C16 SING Y N 25 W53 C16 C17 DOUB Y N 26 W53 C18 C17 SING Y N 27 W53 C19 C18 DOUB Y N 28 W53 C20 C19 SING Y N 29 W53 N6 C20 DOUB Y N 30 W53 C16 N6 SING Y N 31 W53 N7 C20 SING N N 32 W53 C17 C21 SING Y N 33 W53 C21 C22 DOUB Y N 34 W53 C22 C15 SING Y N 35 W53 C8 H8 SING N N 36 W53 C8 H7 SING N N 37 W53 N7 H24 SING N N 38 W53 N7 H25 SING N N 39 W53 C5 H5 SING N N 40 W53 C6 H6 SING N N 41 W53 N3 H10 SING N N 42 W53 C4 H4 SING N N 43 W53 N H1 SING N N 44 W53 N H SING N N 45 W53 C14 H19 SING N N 46 W53 C14 H20 SING N N 47 W53 C18 H21 SING N N 48 W53 C19 H22 SING N N 49 W53 C21 H26 SING N N 50 W53 C22 H27 SING N N 51 W53 C3 H3 SING N N 52 W53 C9 H9 SING N N 53 W53 C11 H12 SING N N 54 W53 C11 H11 SING N N 55 W53 C12 H14 SING N N 56 W53 C12 H13 SING N N 57 W53 C13 H15 SING N N 58 W53 C13 H16 SING N N 59 W53 N4 H17 SING N N 60 W53 N4 H18 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W53 InChI InChI 1.06 "InChI=1S/C23H26N8O/c24-10-1-11-27-23(32)16(12-17-6-2-14-4-8-19(25)30-21(14)28-17)13-18-7-3-15-5-9-20(26)31-22(15)29-18/h2-9,16H,1,10-13,24H2,(H,27,32)(H2,25,28,30)(H2,26,29,31)" W53 InChIKey InChI 1.06 CXQMELVFJVOVGR-UHFFFAOYSA-N W53 SMILES_CANONICAL CACTVS 3.385 "NCCCNC(=O)C(Cc1ccc2ccc(N)nc2n1)Cc3ccc4ccc(N)nc4n3" W53 SMILES CACTVS 3.385 "NCCCNC(=O)C(Cc1ccc2ccc(N)nc2n1)Cc3ccc4ccc(N)nc4n3" W53 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(nc2c1ccc(n2)N)CC(Cc3ccc4ccc(nc4n3)N)C(=O)NCCCN" W53 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(nc2c1ccc(n2)N)CC(Cc3ccc4ccc(nc4n3)N)C(=O)NCCCN" # _pdbx_chem_comp_identifier.comp_id W53 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-(7-azanyl-1,8-naphthyridin-2-yl)-2-[(7-azanyl-1,8-naphthyridin-2-yl)methyl]-~{N}-(3-azanylpropyl)propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W53 "Create component" 2023-09-25 PDBE W53 "Initial release" 2024-05-01 RCSB #