data_W5D # _chem_comp.id W5D _chem_comp.name "4-(1,4-oxazonan-4-yl)-7H-pyrrolo[2,3-d]pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H18 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-29 _chem_comp.pdbx_modified_date 2020-12-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 246.308 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W5D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5RSI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W5D C10 C1 C 0 1 Y N N -45.123 -29.429 4.184 -0.853 0.586 0.138 C10 W5D 1 W5D C17 C2 C 0 1 Y N N -47.736 -29.128 4.386 -1.791 -1.832 -0.399 C17 W5D 2 W5D C01 C3 C 0 1 N N N -46.649 -30.829 -0.141 3.934 -1.125 -0.311 C01 W5D 3 W5D C03 C4 C 0 1 N N N -46.813 -29.228 1.524 2.222 -1.263 1.315 C03 W5D 4 W5D C04 C5 C 0 1 N N N -45.601 -29.376 1.448 0.762 -0.814 1.144 C04 W5D 5 W5D C05 C6 C 0 1 N N N -45.401 -30.532 0.217 3.990 0.415 -0.302 C05 W5D 6 W5D C06 C7 C 0 1 N N N -44.513 -31.703 0.528 2.941 0.884 -1.365 C06 W5D 7 W5D C07 C8 C 0 1 N N N -45.006 -32.105 1.771 2.057 1.932 -0.657 C07 W5D 8 W5D C08 C9 C 0 1 N N N -44.158 -31.030 2.732 1.321 1.450 0.611 C08 W5D 9 W5D C12 C10 C 0 1 Y N N -44.156 -29.415 6.239 -2.546 2.143 0.318 C12 W5D 10 W5D C14 C11 C 0 1 Y N N -46.382 -29.151 6.123 -3.177 -0.022 -0.137 C14 W5D 11 W5D C16 C12 C 0 1 Y N N -48.440 -28.975 5.500 -3.066 -2.223 -0.561 C16 W5D 12 W5D C18 C13 C 0 1 Y N N -46.387 -29.294 4.769 -1.821 -0.398 -0.120 C18 W5D 13 W5D N09 N1 N 0 1 N N N -44.869 -29.645 2.796 0.492 0.266 0.165 N09 W5D 14 W5D N11 N2 N 0 1 Y N N -44.055 -29.483 4.959 -1.262 1.833 0.349 N11 W5D 15 W5D N13 N3 N 0 1 Y N N -45.265 -29.205 6.826 -3.487 1.255 0.082 N13 W5D 16 W5D N15 N4 N 0 1 Y N N -47.630 -29.020 6.529 -3.904 -1.149 -0.407 N15 W5D 17 W5D O02 O1 O 0 1 N N N -47.234 -29.461 -0.018 2.662 -1.735 -0.004 O02 W5D 18 W5D H171 H1 H 0 0 N N N -48.122 -29.126 3.377 -0.913 -2.458 -0.462 H171 W5D 19 W5D H011 H2 H 0 0 N N N -46.706 -31.215 -1.169 4.240 -1.466 -1.300 H011 W5D 20 W5D H012 H3 H 0 0 N N N -47.120 -31.547 0.547 4.666 -1.492 0.408 H012 W5D 21 W5D H031 H4 H 0 0 N N N -47.273 -29.975 2.188 2.837 -0.423 1.637 H031 W5D 22 W5D H032 H5 H 0 0 N N N -47.078 -28.218 1.869 2.282 -2.073 2.042 H032 W5D 23 W5D H041 H6 H 0 0 N N N -45.406 -30.229 0.781 0.177 -1.686 0.851 H041 W5D 24 W5D H1 H7 H 0 1 N N N -45.176 -28.462 1.009 0.398 -0.483 2.116 H1 W5D 25 W5D H2 H8 H 0 1 N N N -44.939 -29.968 -0.607 3.722 0.796 0.683 H2 W5D 26 W5D H051 H9 H 0 0 N N N -45.449 -29.898 1.114 4.987 0.757 -0.581 H051 W5D 27 W5D H061 H10 H 0 0 N N N -44.620 -32.499 -0.223 3.448 1.336 -2.218 H061 W5D 28 W5D H062 H11 H 0 0 N N N -43.457 -31.400 0.593 2.334 0.040 -1.691 H062 W5D 29 W5D H071 H12 H 0 0 N N N -46.094 -31.964 1.851 2.687 2.779 -0.383 H071 W5D 30 W5D H072 H13 H 0 0 N N N -44.755 -33.152 1.998 1.312 2.285 -1.369 H072 W5D 31 W5D H081 H14 H 0 0 N N N -44.083 -31.441 3.749 2.040 1.143 1.371 H081 W5D 32 W5D H082 H15 H 0 0 N N N -43.149 -30.896 2.315 0.676 2.240 0.996 H082 W5D 33 W5D H121 H16 H 0 0 N N N -43.266 -29.541 6.838 -2.835 3.169 0.495 H121 W5D 34 W5D H161 H17 H 0 0 N N N -49.510 -28.836 5.551 -3.383 -3.231 -0.780 H161 W5D 35 W5D H151 H18 H 0 0 N N N -47.917 -28.963 7.485 -4.871 -1.183 -0.479 H151 W5D 36 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W5D C10 C18 DOUB Y N 1 W5D C10 N09 SING N N 2 W5D C10 N11 SING Y N 3 W5D C17 C16 DOUB Y N 4 W5D C17 C18 SING Y N 5 W5D C01 C05 SING N N 6 W5D C01 O02 SING N N 7 W5D C03 C04 SING N N 8 W5D C03 O02 SING N N 9 W5D C04 N09 SING N N 10 W5D C05 C06 SING N N 11 W5D C06 C07 SING N N 12 W5D C07 C08 SING N N 13 W5D C08 N09 SING N N 14 W5D C12 N11 DOUB Y N 15 W5D C12 N13 SING Y N 16 W5D C14 C18 SING Y N 17 W5D C14 N13 DOUB Y N 18 W5D C14 N15 SING Y N 19 W5D C16 N15 SING Y N 20 W5D C17 H171 SING N N 21 W5D C01 H011 SING N N 22 W5D C01 H012 SING N N 23 W5D C03 H031 SING N N 24 W5D C03 H032 SING N N 25 W5D C04 H041 SING N N 26 W5D C04 H1 SING N N 27 W5D C05 H2 SING N N 28 W5D C05 H051 SING N N 29 W5D C06 H061 SING N N 30 W5D C06 H062 SING N N 31 W5D C07 H071 SING N N 32 W5D C07 H072 SING N N 33 W5D C08 H081 SING N N 34 W5D C08 H082 SING N N 35 W5D C12 H121 SING N N 36 W5D C16 H161 SING N N 37 W5D N15 H151 SING N N 38 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W5D SMILES ACDLabs 12.01 "c2(c1ccnc1ncn2)N3CCOCCCCC3" W5D InChI InChI 1.03 "InChI=1S/C13H18N4O/c1-2-6-17(7-9-18-8-3-1)13-11-4-5-14-12(11)15-10-16-13/h4-5,10H,1-3,6-9H2,(H,14,15,16)" W5D InChIKey InChI 1.03 UZDOXWRWKJXTPZ-UHFFFAOYSA-N W5D SMILES_CANONICAL CACTVS 3.385 "C1CCOCCN(CC1)c2ncnc3[nH]ccc23" W5D SMILES CACTVS 3.385 "C1CCOCCN(CC1)c2ncnc3[nH]ccc23" W5D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c[nH]c2c1c(ncn2)N3CCCCCOCC3" W5D SMILES "OpenEye OEToolkits" 2.0.7 "c1c[nH]c2c1c(ncn2)N3CCCCCOCC3" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier W5D "SYSTEMATIC NAME" ACDLabs 12.01 "4-(1,4-oxazonan-4-yl)-7H-pyrrolo[2,3-d]pyrimidine" W5D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-1,4-oxazonane" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W5D "Create component" 2020-09-29 RCSB W5D "Initial release" 2020-12-16 RCSB ##