data_W5N # _chem_comp.id W5N _chem_comp.name "[(1~{R},2~{S},3~{S},4~{R})-2-methoxy-4-methyl-3-[(2~{R},3~{S})-2-methyl-3-(3-methylbut-2-enyl)oxiran-2-yl]-4-oxidanyl-cyclohexyl] ~{N}-(4-azanylcyclohexyl)carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H40 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(3R,4S,5S,6R)-5-methoxy-4-[(2R,3R)-2-methyl-3-(3-methyl-2-buten-1-yl)-2-oxiranyl]-1-oxaspiro[2.5]oct-6-yl N-(trans-4-aminocyclohexyl)carbamate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-02 _chem_comp.pdbx_modified_date 2024-04-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 424.574 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W5N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OXG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W5N O3 O1 O 0 1 N N N N N N -30.007 22.517 -3.177 3.279 3.023 -0.904 O3 W5N 1 W5N O5 O2 O 0 1 N N N N N N -29.436 22.120 3.054 -2.461 2.030 0.345 O5 W5N 2 W5N C3 C1 C 0 1 N N S N N N -29.143 20.937 -1.531 2.316 0.946 -0.130 C3 W5N 3 W5N C4 C2 C 0 1 N N R N N N -27.878 20.543 -2.368 3.661 0.518 0.461 C4 W5N 4 W5N C5 C3 C 0 1 N N N N N N -26.969 21.631 -2.870 4.762 1.580 0.444 C5 W5N 5 W5N C6 C4 C 0 1 N N S N N N -27.000 19.540 -3.025 4.077 -0.945 0.298 C6 W5N 6 W5N C7 C5 C 0 1 N N N N N N -27.265 18.473 -3.995 3.121 -1.880 -0.445 C7 W5N 7 W5N C2 C6 C 0 1 N N S N N N -28.775 22.020 -0.518 1.507 1.693 0.933 C2 W5N 8 W5N N1 N1 N 0 1 N N N N N N -30.029 19.910 2.885 -2.660 -0.041 -0.431 N1 W5N 9 W5N C1 C7 C 0 1 N N N N N N -26.796 22.754 0.576 1.075 1.527 3.284 C1 W5N 10 W5N O1 O3 O 0 1 N N N N N N -27.641 21.645 0.256 1.283 0.834 2.052 O1 W5N 11 W5N O2 O4 O 0 1 N N N N N N -27.277 19.418 -1.638 3.645 -0.408 1.549 O2 W5N 12 W5N C8 C8 C 0 1 N N N N N N -27.923 18.929 -5.253 3.762 -3.235 -0.599 C8 W5N 13 W5N C9 C9 C 0 1 N N N N N N -28.907 18.253 -5.806 3.122 -4.311 -0.212 C9 W5N 14 W5N C10 C10 C 0 1 N N N N N N -29.784 18.750 -6.904 3.826 -5.643 -0.201 C10 W5N 15 W5N C11 C11 C 0 1 N N N N N N -29.298 16.888 -5.315 1.683 -4.215 0.224 C11 W5N 16 W5N C12 C12 C 0 1 N N R N N N -30.359 21.401 -2.365 2.555 1.866 -1.329 C12 W5N 17 W5N C13 C13 C 0 1 N N N N N N -30.687 20.374 -3.425 3.364 1.120 -2.391 C13 W5N 18 W5N C14 C14 C 0 1 N N N N N N -31.552 21.780 -1.473 1.211 2.295 -1.919 C14 W5N 19 W5N C15 C15 C 0 1 N N N N N N -31.155 22.828 -0.413 0.401 3.041 -0.857 C15 W5N 20 W5N C16 C16 C 0 1 N N R N N N -29.934 22.378 0.394 0.162 2.121 0.342 C16 W5N 21 W5N O4 O5 O 0 1 N N N N N N -30.325 21.216 1.158 -0.573 0.946 -0.089 O4 W5N 22 W5N C17 C17 C 0 1 N N N N N N -29.872 21.161 2.440 -1.917 1.015 -0.044 C17 W5N 23 W5N C18 C18 C 0 1 N N N N N N -29.718 19.513 4.246 -4.122 0.035 -0.382 C18 W5N 24 W5N C19 C19 C 0 1 N N N N N N -30.842 18.681 4.814 -4.718 -0.947 -1.393 C19 W5N 25 W5N C20 C20 C 0 1 N N N N N N -30.463 18.158 6.207 -6.245 -0.868 -1.342 C20 W5N 26 W5N C21 C21 C 0 1 N N N N N N -29.114 17.434 6.208 -6.727 -1.229 0.064 C21 W5N 27 W5N N2 N2 N 0 1 N N N N N N -28.750 17.000 7.603 -8.194 -1.153 0.113 N2 W5N 28 W5N C22 C22 C 0 1 N N N N N N -28.006 18.316 5.657 -6.132 -0.248 1.076 C22 W5N 29 W5N C23 C23 C 0 1 N N N N N N -28.368 18.785 4.238 -4.605 -0.327 1.025 C23 W5N 30 W5N H22 H1 H 0 1 N N N N N N -29.773 23.252 -2.622 3.467 3.652 -1.614 H22 W5N 31 W5N H5 H2 H 0 1 N N N N N N -29.451 20.044 -0.967 1.764 0.064 -0.454 H5 W5N 32 W5N H7 H3 H 0 1 N N N N N N -27.349 22.609 -2.540 5.712 1.123 0.721 H7 W5N 33 W5N H8 H4 H 0 1 N N N N N N -25.957 21.477 -2.468 4.841 2.005 -0.557 H8 W5N 34 W5N H6 H5 H 0 1 N N N N N N -26.936 21.603 -3.969 4.517 2.369 1.155 H6 W5N 35 W5N H9 H6 H 0 1 N N N N N N -26.000 19.967 -3.191 5.139 -1.160 0.177 H9 W5N 36 W5N H11 H7 H 0 1 N N N N N N -27.918 17.728 -3.516 2.196 -1.979 0.122 H11 W5N 37 W5N H10 H8 H 0 1 N N N N N N -26.306 18.004 -4.260 2.901 -1.468 -1.430 H10 W5N 38 W5N H4 H9 H 0 1 N N N N N N -28.520 22.924 -1.090 2.059 2.575 1.256 H4 W5N 39 W5N H28 H10 H 0 1 N N N N N N -30.376 19.218 2.252 -2.226 -0.851 -0.741 H28 W5N 40 W5N H1 H11 H 0 1 N N N N N N -25.941 22.404 1.172 1.913 2.199 3.469 H1 W5N 41 W5N H2 H12 H 0 1 N N N N N N -26.431 23.216 -0.353 0.153 2.104 3.225 H2 W5N 42 W5N H3 H13 H 0 1 N N N N N N -27.367 23.495 1.154 1.001 0.806 4.099 H3 W5N 43 W5N H12 H14 H 0 1 N N N N N N -27.582 19.840 -5.723 4.749 -3.320 -1.030 H12 W5N 44 W5N H15 H15 H 0 1 N N N N N N -29.448 19.749 -7.219 3.692 -6.133 -1.166 H15 W5N 45 W5N H13 H16 H 0 1 N N N N N N -29.729 18.059 -7.758 4.889 -5.491 -0.015 H13 W5N 46 W5N H14 H17 H 0 1 N N N N N N -30.822 18.808 -6.546 3.405 -6.270 0.586 H14 W5N 47 W5N H17 H18 H 0 1 N N N N N N -28.616 16.579 -4.509 1.319 -3.201 0.056 H17 W5N 48 W5N H18 H19 H 0 1 N N N N N N -30.329 16.918 -4.932 1.081 -4.917 -0.354 H18 W5N 49 W5N H16 H20 H 0 1 N N N N N N -29.235 16.168 -6.145 1.607 -4.458 1.283 H16 W5N 50 W5N H19 H21 H 0 1 N N N N N N -30.985 19.431 -2.943 4.282 0.735 -1.946 H19 W5N 51 W5N H21 H22 H 0 1 N N N N N N -31.514 20.743 -4.050 2.774 0.290 -2.781 H21 W5N 52 W5N H20 H23 H 0 1 N N N N N N -29.801 20.200 -4.054 3.613 1.802 -3.204 H20 W5N 53 W5N H23 H24 H 0 1 N N N N N N -32.352 22.195 -2.104 1.381 2.950 -2.773 H23 W5N 54 W5N H24 H25 H 0 1 N N N N N N -31.918 20.877 -0.963 0.658 1.413 -2.243 H24 W5N 55 W5N H25 H26 H 0 1 N N N N N N -30.919 23.776 -0.919 0.954 3.924 -0.533 H25 W5N 56 W5N H26 H27 H 0 1 N N N N N N -32.001 22.979 0.274 -0.557 3.347 -1.278 H26 W5N 57 W5N H27 H28 H 0 1 N N N N N N -29.628 23.192 1.068 -0.414 2.653 1.099 H27 W5N 58 W5N H29 H29 H 0 1 N N N N N N -29.612 20.415 4.866 -4.442 1.048 -0.626 H29 W5N 59 W5N H31 H30 H 0 1 N N N N N N -31.748 19.300 4.892 -4.374 -0.689 -2.395 H31 W5N 60 W5N H30 H31 H 0 1 N N N N N N -31.036 17.829 4.146 -4.398 -1.959 -1.149 H30 W5N 61 W5N H32 H32 H 0 1 N N N N N N -30.408 19.009 6.902 -6.565 0.145 -1.587 H32 W5N 62 W5N H33 H33 H 0 1 N N N N N N -31.241 17.458 6.546 -6.669 -1.567 -2.063 H33 W5N 63 W5N H34 H34 H 0 1 N N N N N N -29.199 16.541 5.572 -6.407 -2.242 0.309 H34 W5N 64 W5N H37 H35 H 0 1 N N N N N N -29.475 16.419 7.972 -8.537 -1.388 1.032 H37 W5N 65 W5N H35 H36 H 0 1 N N N N N N -27.892 16.487 7.579 -8.518 -0.242 -0.172 H35 W5N 66 W5N H39 H38 H 0 1 N N N N N N -27.067 17.744 5.624 -6.452 0.765 0.831 H39 W5N 67 W5N H38 H39 H 0 1 N N N N N N -27.879 19.192 6.310 -6.476 -0.506 2.078 H38 W5N 68 W5N H40 H40 H 0 1 N N N N N N -28.431 17.912 3.572 -4.285 -1.340 1.269 H40 W5N 69 W5N H41 H41 H 0 1 N N N N N N -27.589 19.470 3.872 -4.181 0.372 1.745 H41 W5N 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W5N C10 C9 SING N N 1 W5N C9 C11 SING N N 2 W5N C9 C8 DOUB N N 3 W5N C8 C7 SING N N 4 W5N C7 C6 SING N N 5 W5N C13 C12 SING N N 6 W5N O3 C12 SING N N 7 W5N C6 C4 SING N N 8 W5N C6 O2 SING N N 9 W5N C5 C4 SING N N 10 W5N C4 O2 SING N N 11 W5N C4 C3 SING N N 12 W5N C12 C3 SING N N 13 W5N C12 C14 SING N N 14 W5N C3 C2 SING N N 15 W5N C14 C15 SING N N 16 W5N C2 O1 SING N N 17 W5N C2 C16 SING N N 18 W5N C15 C16 SING N N 19 W5N O1 C1 SING N N 20 W5N C16 O4 SING N N 21 W5N O4 C17 SING N N 22 W5N C17 N1 SING N N 23 W5N C17 O5 DOUB N N 24 W5N N1 C18 SING N N 25 W5N C23 C18 SING N N 26 W5N C23 C22 SING N N 27 W5N C18 C19 SING N N 28 W5N C19 C20 SING N N 29 W5N C22 C21 SING N N 30 W5N C20 C21 SING N N 31 W5N C21 N2 SING N N 32 W5N O3 H22 SING N N 33 W5N C3 H5 SING N N 34 W5N C5 H7 SING N N 35 W5N C5 H8 SING N N 36 W5N C5 H6 SING N N 37 W5N C6 H9 SING N N 38 W5N C7 H11 SING N N 39 W5N C7 H10 SING N N 40 W5N C2 H4 SING N N 41 W5N N1 H28 SING N N 42 W5N C1 H1 SING N N 43 W5N C1 H2 SING N N 44 W5N C1 H3 SING N N 45 W5N C8 H12 SING N N 46 W5N C10 H15 SING N N 47 W5N C10 H13 SING N N 48 W5N C10 H14 SING N N 49 W5N C11 H17 SING N N 50 W5N C11 H18 SING N N 51 W5N C11 H16 SING N N 52 W5N C13 H19 SING N N 53 W5N C13 H21 SING N N 54 W5N C13 H20 SING N N 55 W5N C14 H23 SING N N 56 W5N C14 H24 SING N N 57 W5N C15 H25 SING N N 58 W5N C15 H26 SING N N 59 W5N C16 H27 SING N N 60 W5N C18 H29 SING N N 61 W5N C19 H31 SING N N 62 W5N C19 H30 SING N N 63 W5N C20 H32 SING N N 64 W5N C20 H33 SING N N 65 W5N C21 H34 SING N N 66 W5N N2 H37 SING N N 67 W5N N2 H35 SING N N 68 W5N C22 H39 SING N N 69 W5N C22 H38 SING N N 70 W5N C23 H40 SING N N 71 W5N C23 H41 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W5N InChI InChI 1.06 "InChI=1S/C23H40N2O5/c1-14(2)6-11-18-23(4,30-18)20-19(28-5)17(12-13-22(20,3)27)29-21(26)25-16-9-7-15(24)8-10-16/h6,15-20,27H,7-13,24H2,1-5H3,(H,25,26)/t15-,16-,17-,18+,19-,20+,22-,23+/m1/s1" W5N InChIKey InChI 1.06 HIVGAXHLTXHXTO-PGPLIXAESA-N W5N SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1[C@@H](CC[C@@](C)(O)[C@H]1[C@@]2(C)O[C@H]2CC=C(C)C)OC(=O)N[C@H]3CC[C@H](N)CC3" W5N SMILES CACTVS 3.385 "CO[CH]1[CH](CC[C](C)(O)[CH]1[C]2(C)O[CH]2CC=C(C)C)OC(=O)N[CH]3CC[CH](N)CC3" W5N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=CC[C@H]1[C@@](O1)(C)[C@H]2[C@@H]([C@@H](CC[C@@]2(C)O)OC(=O)NC3CCC(CC3)N)OC)C" W5N SMILES "OpenEye OEToolkits" 2.0.7 "CC(=CCC1C(O1)(C)C2C(C(CCC2(C)O)OC(=O)NC3CCC(CC3)N)OC)C" # _pdbx_chem_comp_identifier.comp_id W5N _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(1~{R},2~{S},3~{S},4~{R})-2-methoxy-4-methyl-3-[(2~{R},3~{S})-2-methyl-3-(3-methylbut-2-enyl)oxiran-2-yl]-4-oxidanyl-cyclohexyl] ~{N}-(4-azanylcyclohexyl)carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W5N "Create component" 2023-05-02 PDBE W5N "Initial release" 2024-04-10 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id W5N _pdbx_chem_comp_synonyms.name "(3R,4S,5S,6R)-5-methoxy-4-[(2R,3R)-2-methyl-3-(3-methyl-2-buten-1-yl)-2-oxiranyl]-1-oxaspiro[2.5]oct-6-yl N-(trans-4-aminocyclohexyl)carbamate" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #