data_W5V # _chem_comp.id W5V _chem_comp.name "2-(2,6-difluorophenyl)-5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-3,6-dihydropyrimidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H16 F2 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-29 _chem_comp.pdbx_modified_date 2021-09-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 402.352 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W5V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7K87 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W5V C11 C1 C 0 1 N N N 40.839 15.029 16.577 -1.336 1.533 -0.058 C11 W5V 1 W5V C12 C2 C 0 1 N N N 40.414 15.703 17.840 -2.085 2.663 0.127 C12 W5V 2 W5V C14 C3 C 0 1 N N N 38.975 15.716 18.238 -3.540 2.509 0.303 C14 W5V 3 W5V C17 C4 C 0 1 N N N 38.390 14.414 16.147 -3.312 0.218 0.096 C17 W5V 4 W5V C19 C5 C 0 1 Y N N 37.318 13.748 15.286 -3.945 -1.115 0.074 C19 W5V 5 W5V C20 C6 C 0 1 Y N N 37.163 12.374 15.329 -4.402 -1.657 -1.132 C20 W5V 6 W5V C01 C7 C 0 1 N N N 38.330 9.920 11.014 8.745 -0.547 1.463 C01 W5V 7 W5V C03 C8 C 0 1 Y N N 40.038 11.522 11.259 6.569 -0.641 0.514 C03 W5V 8 W5V C04 C9 C 0 1 Y N N 40.920 12.172 12.103 5.187 -0.726 0.619 C04 W5V 9 W5V C05 C10 C 0 1 Y N N 41.443 13.407 11.744 4.422 -0.728 -0.535 C05 W5V 10 W5V C06 C11 C 0 1 N N N 42.409 14.124 12.684 2.920 -0.819 -0.463 C06 W5V 11 W5V C07 C12 C 0 1 N N N 42.228 13.593 14.105 2.326 0.589 -0.385 C07 W5V 12 W5V C09 C13 C 0 1 N N N 42.337 15.053 16.228 0.125 1.624 -0.241 C09 W5V 13 W5V C22 C14 C 0 1 Y N N 36.188 11.765 14.553 -4.993 -2.906 -1.143 C22 W5V 14 W5V C23 C15 C 0 1 Y N N 35.369 12.534 13.742 -5.135 -3.619 0.034 C23 W5V 15 W5V C24 C16 C 0 1 Y N N 35.522 13.911 13.703 -4.686 -3.090 1.231 C24 W5V 16 W5V C25 C17 C 0 1 Y N N 36.496 14.519 14.478 -4.087 -1.845 1.259 C25 W5V 17 W5V C27 C18 C 0 1 Y N N 41.051 13.955 10.530 5.071 -0.643 -1.758 C27 W5V 18 W5V C28 C19 C 0 1 Y N N 40.164 13.240 9.736 6.449 -0.561 -1.788 C28 W5V 19 W5V F21 F1 F 0 1 N N N 37.973 11.620 16.131 -4.265 -0.962 -2.282 F21 W5V 20 W5V F26 F2 F 0 1 N N N 36.649 15.878 14.442 -3.649 -1.331 2.429 F26 W5V 21 W5V N08 N1 N 0 1 N N N 42.951 14.386 15.083 0.866 0.500 -0.316 N08 W5V 22 W5V N16 N2 N 0 1 N N N 37.977 15.080 17.405 -4.070 1.281 0.277 N16 W5V 23 W5V N18 N3 N 0 1 N N N 39.825 14.395 15.745 -1.969 0.309 -0.065 N18 W5V 24 W5V N29 N4 N 0 1 Y N N 39.688 12.066 10.108 7.151 -0.556 -0.671 N29 W5V 25 W5V O02 O1 O 0 1 N N N 39.528 10.275 11.644 7.329 -0.637 1.638 O02 W5V 26 W5V O10 O2 O 0 1 N N N 43.054 15.660 16.945 0.661 2.712 -0.323 O10 W5V 27 W5V O13 O3 O 0 1 N N N 41.368 16.321 18.658 -1.506 3.888 0.147 O13 W5V 28 W5V O15 O4 O 0 1 N N N 38.639 16.246 19.234 -4.250 3.488 0.472 O15 W5V 29 W5V H1 H1 H 0 1 N N N 38.004 8.933 11.374 9.093 -1.397 0.875 H1 W5V 30 W5V H2 H2 H 0 1 N N N 37.558 10.668 11.247 8.988 0.379 0.942 H2 W5V 31 W5V H3 H3 H 0 1 N N N 38.486 9.880 9.926 9.233 -0.555 2.437 H3 W5V 32 W5V H4 H4 H 0 1 N N N 41.202 11.719 13.042 4.715 -0.791 1.589 H4 W5V 33 W5V H5 H5 H 0 1 N N N 43.443 13.943 12.354 2.544 -1.323 -1.354 H5 W5V 34 W5V H6 H6 H 0 1 N N N 42.202 15.204 12.667 2.632 -1.385 0.423 H6 W5V 35 W5V H7 H7 H 0 1 N N N 41.157 13.611 14.356 2.703 1.093 0.505 H7 W5V 36 W5V H8 H8 H 0 1 N N N 42.597 12.558 14.146 2.615 1.154 -1.272 H8 W5V 37 W5V H9 H9 H 0 1 N N N 36.067 10.692 14.581 -5.346 -3.327 -2.073 H9 W5V 38 W5V H10 H10 H 0 1 N N N 34.609 12.059 13.139 -5.599 -4.595 0.018 H10 W5V 39 W5V H11 H11 H 0 1 N N N 34.883 14.509 13.070 -4.801 -3.654 2.145 H11 W5V 40 W5V H12 H12 H 0 1 N N N 41.427 14.916 10.210 4.504 -0.643 -2.678 H12 W5V 41 W5V H13 H13 H 0 1 N N N 39.855 13.656 8.788 6.958 -0.490 -2.738 H13 W5V 42 W5V H14 H14 H 0 1 N N N 43.939 14.482 14.964 0.431 -0.367 -0.325 H14 W5V 43 W5V H15 H15 H 0 1 N N N 40.095 13.942 14.895 -1.447 -0.498 -0.196 H15 W5V 44 W5V H16 H16 H 0 1 N N N 42.226 16.246 18.257 -2.128 4.616 0.284 H16 W5V 45 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W5V C28 N29 DOUB Y N 1 W5V C28 C27 SING Y N 2 W5V N29 C03 SING Y N 3 W5V C27 C05 DOUB Y N 4 W5V C01 O02 SING N N 5 W5V C03 O02 SING N N 6 W5V C03 C04 DOUB Y N 7 W5V C05 C04 SING Y N 8 W5V C05 C06 SING N N 9 W5V C06 C07 SING N N 10 W5V C24 C23 DOUB Y N 11 W5V C24 C25 SING Y N 12 W5V C23 C22 SING Y N 13 W5V C07 N08 SING N N 14 W5V F26 C25 SING N N 15 W5V C25 C19 DOUB Y N 16 W5V C22 C20 DOUB Y N 17 W5V N08 C09 SING N N 18 W5V C19 C20 SING Y N 19 W5V C19 C17 SING N N 20 W5V C20 F21 SING N N 21 W5V N18 C17 SING N N 22 W5V N18 C11 SING N N 23 W5V C17 N16 DOUB N N 24 W5V C09 C11 SING N N 25 W5V C09 O10 DOUB N N 26 W5V C11 C12 DOUB N N 27 W5V N16 C14 SING N N 28 W5V C12 C14 SING N N 29 W5V C12 O13 SING N N 30 W5V C14 O15 DOUB N N 31 W5V C01 H1 SING N N 32 W5V C01 H2 SING N N 33 W5V C01 H3 SING N N 34 W5V C04 H4 SING N N 35 W5V C06 H5 SING N N 36 W5V C06 H6 SING N N 37 W5V C07 H7 SING N N 38 W5V C07 H8 SING N N 39 W5V C22 H9 SING N N 40 W5V C23 H10 SING N N 41 W5V C24 H11 SING N N 42 W5V C27 H12 SING N N 43 W5V C28 H13 SING N N 44 W5V N08 H14 SING N N 45 W5V N18 H15 SING N N 46 W5V O13 H16 SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W5V SMILES ACDLabs 12.01 "C2(=C(C(=O)N=C(c1c(F)cccc1F)N2)O)C(=O)NCCc3cc(OC)ncc3" W5V InChI InChI 1.03 "InChI=1S/C19H16F2N4O4/c1-29-13-9-10(5-7-22-13)6-8-23-18(27)15-16(26)19(28)25-17(24-15)14-11(20)3-2-4-12(14)21/h2-5,7,9,26H,6,8H2,1H3,(H,23,27)(H,24,25,28)" W5V InChIKey InChI 1.03 PXMDINKIDXMYND-UHFFFAOYSA-N W5V SMILES_CANONICAL CACTVS 3.385 "COc1cc(CCNC(=O)C2=C(O)C(=O)N=C(N2)c3c(F)cccc3F)ccn1" W5V SMILES CACTVS 3.385 "COc1cc(CCNC(=O)C2=C(O)C(=O)N=C(N2)c3c(F)cccc3F)ccn1" W5V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc(ccn1)CCNC(=O)C2=C(C(=O)N=C(N2)c3c(cccc3F)F)O" W5V SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc(ccn1)CCNC(=O)C2=C(C(=O)N=C(N2)c3c(cccc3F)F)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier W5V "SYSTEMATIC NAME" ACDLabs 12.01 "2-(2,6-difluorophenyl)-5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-3,6-dihydropyrimidine-4-carboxamide" W5V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[2,6-bis(fluoranyl)phenyl]-~{N}-[2-(2-methoxypyridin-4-yl)ethyl]-5-oxidanyl-4-oxidanylidene-1~{H}-pyrimidine-6-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W5V "Create component" 2020-09-29 RCSB W5V "Initial release" 2021-09-29 RCSB ##