data_W6Q
#
_chem_comp.id W6Q
_chem_comp.name "(2~{R},3~{S})-3-azanyl-~{N}-[(2,5-dimethylphenyl)methyl]-2-oxidanyl-butanamide"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H20 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-01-09
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 236.310
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code W6Q
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5MTF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
W6Q O12 O1 O 0 1 N N N N N N -12.964 -6.130 -12.596 -2.082 1.123 1.613 O12 W6Q 1
W6Q C11 C1 C 0 1 N N N N N N -13.352 -7.329 -12.636 -1.840 0.679 0.511 C11 W6Q 2
W6Q C7 C2 C 0 1 N N R N N N -14.847 -7.615 -12.980 -2.964 0.403 -0.455 C7 W6Q 3
W6Q O9 O2 O 0 1 N N N N N N -15.310 -6.366 -13.422 -4.198 0.850 0.111 O9 W6Q 4
W6Q C2 C3 C 0 1 N N S N N N -15.719 -8.184 -11.856 -3.043 -1.100 -0.728 C2 W6Q 5
W6Q C3 C4 C 0 1 N N N N N N -17.196 -8.358 -12.324 -4.185 -1.381 -1.708 C3 W6Q 6
W6Q N1 N1 N 0 1 N N N N N N -15.630 -7.254 -10.782 -3.293 -1.815 0.531 N1 W6Q 7
W6Q N13 N2 N 0 1 N N N N N N -12.515 -8.338 -12.405 -0.565 0.438 0.147 N13 W6Q 8
W6Q C15 C5 C 0 1 N N N N N N -11.042 -8.241 -12.245 0.528 0.712 1.083 C15 W6Q 9
W6Q C18 C6 C 0 1 Y N N N N N -10.516 -7.465 -13.439 1.843 0.359 0.437 C18 W6Q 10
W6Q C33 C7 C 0 1 Y N N N N N -10.821 -7.929 -14.717 2.457 -0.844 0.731 C33 W6Q 11
W6Q C28 C8 C 0 1 Y N N N N N -10.438 -7.192 -15.888 3.661 -1.170 0.135 C28 W6Q 12
W6Q C29 C9 C 0 1 N N N N N N -10.754 -7.655 -17.255 4.330 -2.481 0.456 C29 W6Q 13
W6Q C26 C10 C 0 1 Y N N N N N -9.741 -6.008 -15.723 4.250 -0.293 -0.757 C26 W6Q 14
W6Q C24 C11 C 0 1 Y N N N N N -9.416 -5.568 -14.441 3.636 0.910 -1.051 C24 W6Q 15
W6Q C19 C12 C 0 1 Y N N N N N -9.788 -6.267 -13.287 2.433 1.236 -0.455 C19 W6Q 16
W6Q C20 C13 C 0 1 N N N N N N -9.393 -5.661 -11.977 1.761 2.545 -0.780 C20 W6Q 17
W6Q H1 H1 H 0 1 N N N N N N -14.864 -8.331 -13.815 -2.779 0.933 -1.389 H1 W6Q 18
W6Q H2 H2 H 0 1 N N N N N N -14.627 -5.716 -13.307 -4.427 0.420 0.946 H2 W6Q 19
W6Q H3 H3 H 0 1 N N N N N N -15.324 -9.165 -11.554 -2.102 -1.442 -1.159 H3 W6Q 20
W6Q H4 H4 H 0 1 N N N N N N -17.797 -8.767 -11.498 -4.000 -0.851 -2.642 H4 W6Q 21
W6Q H5 H5 H 0 1 N N N N N N -17.603 -7.381 -12.624 -4.241 -2.452 -1.903 H5 W6Q 22
W6Q H6 H6 H 0 1 N N N N N N -17.230 -9.048 -13.180 -5.126 -1.040 -1.277 H6 W6Q 23
W6Q H7 H7 H 0 1 N N N N N N -16.184 -7.576 -10.014 -4.160 -1.516 0.951 H7 W6Q 24
W6Q H8 H8 H 0 1 N N N N N N -14.677 -7.170 -10.492 -3.285 -2.814 0.387 H8 W6Q 25
W6Q H10 H10 H 0 1 N N N N N N -12.918 -9.250 -12.332 -0.371 0.083 -0.735 H10 W6Q 26
W6Q H11 H11 H 0 1 N N N N N N -10.597 -9.247 -12.223 0.525 1.770 1.346 H11 W6Q 27
W6Q H12 H12 H 0 1 N N N N N N -10.797 -7.711 -11.313 0.394 0.113 1.984 H12 W6Q 28
W6Q H13 H13 H 0 1 N N N N N N -11.356 -8.861 -14.829 1.997 -1.529 1.428 H13 W6Q 29
W6Q H14 H14 H 0 1 N N N N N N -9.936 -8.290 -17.626 4.997 -2.350 1.308 H14 W6Q 30
W6Q H15 H15 H 0 1 N N N N N N -11.689 -8.234 -17.239 3.572 -3.226 0.699 H15 W6Q 31
W6Q H16 H16 H 0 1 N N N N N N -10.872 -6.786 -17.918 4.905 -2.817 -0.408 H16 W6Q 32
W6Q H17 H17 H 0 1 N N N N N N -9.450 -5.426 -16.585 5.191 -0.548 -1.223 H17 W6Q 33
W6Q H18 H18 H 0 1 N N N N N N -8.855 -4.651 -14.334 4.097 1.595 -1.747 H18 W6Q 34
W6Q H19 H19 H 0 1 N N N N N N -10.188 -4.984 -11.631 2.100 3.311 -0.084 H19 W6Q 35
W6Q H20 H20 H 0 1 N N N N N N -9.242 -6.459 -11.235 2.015 2.841 -1.798 H20 W6Q 36
W6Q H21 H21 H 0 1 N N N N N N -8.458 -5.095 -12.102 0.680 2.429 -0.695 H21 W6Q 37
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
W6Q C29 C28 SING N N 1
W6Q C28 C26 DOUB Y N 2
W6Q C28 C33 SING Y N 3
W6Q C26 C24 SING Y N 4
W6Q C33 C18 DOUB Y N 5
W6Q C24 C19 DOUB Y N 6
W6Q C18 C19 SING Y N 7
W6Q C18 C15 SING N N 8
W6Q O9 C7 SING N N 9
W6Q C19 C20 SING N N 10
W6Q C7 C11 SING N N 11
W6Q C7 C2 SING N N 12
W6Q C11 O12 DOUB N N 13
W6Q C11 N13 SING N N 14
W6Q N13 C15 SING N N 15
W6Q C3 C2 SING N N 16
W6Q C2 N1 SING N N 17
W6Q C7 H1 SING N N 18
W6Q O9 H2 SING N N 19
W6Q C2 H3 SING N N 20
W6Q C3 H4 SING N N 21
W6Q C3 H5 SING N N 22
W6Q C3 H6 SING N N 23
W6Q N1 H7 SING N N 24
W6Q N1 H8 SING N N 25
W6Q N13 H10 SING N N 26
W6Q C15 H11 SING N N 27
W6Q C15 H12 SING N N 28
W6Q C33 H13 SING N N 29
W6Q C29 H14 SING N N 30
W6Q C29 H15 SING N N 31
W6Q C29 H16 SING N N 32
W6Q C26 H17 SING N N 33
W6Q C24 H18 SING N N 34
W6Q C20 H19 SING N N 35
W6Q C20 H20 SING N N 36
W6Q C20 H21 SING N N 37
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
W6Q InChI InChI 1.03 "InChI=1S/C13H20N2O2/c1-8-4-5-9(2)11(6-8)7-15-13(17)12(16)10(3)14/h4-6,10,12,16H,7,14H2,1-3H3,(H,15,17)/t10-,12+/m0/s1"
W6Q InChIKey InChI 1.03 VHLSQFGLCXFUNO-CMPLNLGQSA-N
W6Q SMILES_CANONICAL CACTVS 3.385 "C[C@H](N)[C@@H](O)C(=O)NCc1cc(C)ccc1C"
W6Q SMILES CACTVS 3.385 "C[CH](N)[CH](O)C(=O)NCc1cc(C)ccc1C"
W6Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1ccc(c(c1)CNC(=O)[C@@H]([C@H](C)N)O)C"
W6Q SMILES "OpenEye OEToolkits" 2.0.6 "Cc1ccc(c(c1)CNC(=O)C(C(C)N)O)C"
#
_pdbx_chem_comp_identifier.comp_id W6Q
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier "(2~{R},3~{S})-3-azanyl-~{N}-[(2,5-dimethylphenyl)methyl]-2-oxidanyl-butanamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
W6Q "Create component" 2017-01-09 EBI
W6Q "Initial release" 2017-11-15 RCSB
W6Q "Modify PCM" 2024-09-27 PDBE
#