data_W78 # _chem_comp.id W78 _chem_comp.name "3-[(1~{R},3~{R},6~{R},8~{R},9~{R},10~{R},12~{R},15~{R},17~{R},18~{R})-8-(6-aminopurin-9-yl)-9-fluoranyl-18-oxidanyl-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-6~{H}-imidazo[4,5-d]pyridazin-7-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H22 F N9 O10 P2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-09 _chem_comp.pdbx_modified_date 2023-07-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 693.519 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W78 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8P01 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W78 C4 C1 C 0 1 N N R 44.654 2.215 -16.698 -4.178 0.729 -0.012 C4 W78 1 W78 C13 C2 C 0 1 N N N 43.743 7.041 -17.247 -5.186 -3.890 -1.466 C13 W78 2 W78 C21 C3 C 0 1 N N R 49.814 1.390 -18.743 1.983 1.247 1.505 C21 W78 3 W78 C22 C4 C 0 1 N N R 49.590 2.110 -17.422 1.839 1.163 -0.021 C22 W78 4 W78 C24 C5 C 0 1 N N R 51.312 3.204 -18.587 4.166 0.968 0.653 C24 W78 5 W78 C28 C6 C 0 1 Y N N 49.682 4.835 -19.650 4.133 -1.492 1.216 C28 W78 6 W78 C1 C7 C 0 1 N N R 45.608 0.438 -15.518 -3.262 2.839 -0.565 C1 W78 7 W78 C11 C8 C 0 1 Y N N 43.905 4.597 -17.144 -4.749 -1.696 -0.451 C11 W78 8 W78 C12 C9 C 0 1 Y N N 44.442 5.848 -16.831 -4.805 -2.486 -1.605 C12 W78 9 W78 C16 C10 C 0 1 N N N 42.680 4.541 -17.876 -5.058 -2.272 0.794 C16 W78 10 W78 C18 C11 C 0 1 N N N 46.850 0.521 -14.671 -2.513 3.099 -1.879 C18 W78 11 W78 C2 C12 C 0 1 N N R 45.813 0.174 -17.006 -2.293 2.209 0.450 C2 W78 12 W78 C23 C13 C 0 1 N N R 50.949 2.746 -17.184 3.278 1.266 -0.564 C23 W78 13 W78 C3 C14 C 0 1 N N R 45.727 1.582 -17.576 -2.745 0.735 0.555 C3 W78 14 W78 C30 C15 C 0 1 Y N N 51.179 5.705 -18.317 5.746 -0.843 -0.139 C30 W78 15 W78 C31 C16 C 0 1 Y N N 50.347 6.679 -18.839 5.842 -2.225 0.101 C31 W78 16 W78 C32 C17 C 0 1 Y N N 50.604 8.008 -18.452 6.885 -2.935 -0.517 C32 W78 17 W78 C34 C18 C 0 1 Y N N 52.349 7.183 -17.179 7.599 -0.969 -1.493 C34 W78 18 W78 C37 C19 C 0 1 N N N 48.567 1.131 -19.555 1.215 0.095 2.163 C37 W78 19 W78 C9 C20 C 0 1 Y N N 45.794 4.398 -16.031 -4.211 -0.498 -2.215 C9 W78 20 W78 F44 F1 F 0 1 N N N 51.915 1.857 -16.703 3.528 2.555 -1.048 F44 W78 21 W78 N10 N1 N 0 1 Y N N 45.631 5.699 -16.133 -4.468 -1.701 -2.644 N10 W78 22 W78 N14 N2 N 0 1 N N N 42.587 6.804 -17.926 -5.472 -4.360 -0.232 N14 W78 23 W78 N15 N3 N 0 1 N N N 42.041 5.601 -18.263 -5.400 -3.525 0.886 N15 W78 24 W78 N27 N4 N 0 1 Y N N 50.776 4.524 -18.886 4.662 -0.409 0.581 N27 W78 25 W78 N29 N5 N 0 1 Y N N 49.403 6.115 -19.685 4.826 -2.556 0.933 N29 W78 26 W78 N33 N6 N 0 1 Y N N 51.631 8.227 -17.602 7.729 -2.268 -1.298 N33 W78 27 W78 N35 N7 N 0 1 Y N N 52.206 5.892 -17.482 6.639 -0.263 -0.935 N35 W78 28 W78 N36 N8 N 0 1 N N N 49.894 9.056 -18.867 7.030 -4.297 -0.318 N36 W78 29 W78 N8 N9 N 0 1 Y N N 44.774 3.675 -16.595 -4.372 -0.446 -0.865 N8 W78 30 W78 O17 O1 O 0 1 N N N 44.114 8.195 -17.025 -5.249 -4.619 -2.441 O17 W78 31 W78 O19 O2 O 0 1 N N N 47.441 1.828 -14.729 -1.124 3.277 -1.587 O19 W78 32 W78 O25 O3 O 0 1 N N N 50.711 2.265 -19.468 3.368 1.132 1.824 O25 W78 33 W78 O26 O4 O 0 1 N N N 49.310 1.251 -16.300 1.049 2.245 -0.516 O26 W78 34 W78 O38 O5 O 0 1 N N N 47.763 2.331 -19.600 -0.144 0.123 1.734 O38 W78 35 W78 O40 O6 O 0 1 N N N 45.688 3.772 -20.061 -1.461 -1.399 3.259 O40 W78 36 W78 O41 O7 O 0 1 N N N 49.480 3.332 -14.761 -0.732 0.784 -1.544 O41 W78 37 W78 O5 O8 O 0 1 N N N 44.827 1.652 -15.409 -4.328 1.920 -0.783 O5 W78 38 W78 O6 O9 O 0 1 N N N 45.333 1.572 -18.962 -2.752 0.312 1.919 O6 W78 39 W78 O7 O10 O 0 1 N N N 44.761 -0.638 -17.520 -2.407 2.859 1.717 O7 W78 40 W78 P20 P1 P 0 1 N N R 49.063 1.916 -14.801 -0.044 2.087 -1.686 P20 W78 41 W78 P39 P2 P 0 1 N N R 46.200 2.410 -20.081 -1.399 -0.017 2.732 P39 W78 42 W78 S42 S1 S 0 1 N N N 46.062 1.356 -21.657 -1.187 1.347 4.341 S42 W78 43 W78 S43 S2 S 0 1 N N N 49.755 0.565 -13.644 0.925 2.168 -3.570 S43 W78 44 W78 H48 H1 H 0 1 N N N 43.664 1.953 -17.101 -4.902 0.720 0.803 H48 W78 45 W78 H55 H2 H 0 1 N N N 50.313 0.431 -18.542 1.594 2.201 1.865 H55 W78 46 W78 H56 H3 H 0 1 N N N 48.820 2.887 -17.537 1.398 0.208 -0.306 H56 W78 47 W78 H58 H4 H 0 1 N N N 52.406 3.202 -18.701 5.005 1.663 0.678 H58 W78 48 W78 H59 H5 H 0 1 N N N 49.101 4.092 -20.176 3.268 -1.470 1.862 H59 W78 49 W78 H45 H6 H 0 1 N N N 45.001 -0.391 -15.125 -3.651 3.780 -0.173 H45 W78 50 W78 H52 H7 H 0 1 N N N 42.267 3.573 -18.118 -5.016 -1.665 1.687 H52 W78 51 W78 H53 H8 H 0 1 N N N 46.587 0.294 -13.627 -2.641 2.247 -2.547 H53 W78 52 W78 H54 H9 H 0 1 N N N 47.580 -0.218 -15.034 -2.908 3.997 -2.353 H54 W78 53 W78 H46 H10 H 0 1 N N N 46.806 -0.263 -17.191 -1.268 2.267 0.084 H46 W78 54 W78 H57 H11 H 0 1 N N N 50.840 3.620 -16.525 3.444 0.525 -1.347 H57 W78 55 W78 H47 H12 H 0 1 N N N 46.685 2.105 -17.437 -2.098 0.104 -0.054 H47 W78 56 W78 H60 H13 H 0 1 N N N 53.155 7.416 -16.499 8.307 -0.466 -2.135 H60 W78 57 W78 H64 H14 H 0 1 N N N 47.988 0.319 -19.090 1.667 -0.854 1.875 H64 W78 58 W78 H63 H15 H 0 1 N N N 48.849 0.840 -20.578 1.256 0.203 3.247 H63 W78 59 W78 H50 H16 H 0 1 N N N 46.648 3.943 -15.550 -3.915 0.333 -2.838 H50 W78 60 W78 H51 H17 H 0 1 N N N 42.074 7.613 -18.213 -5.731 -5.288 -0.121 H51 W78 61 W78 H61 H18 H 0 1 N N N 50.260 9.891 -18.456 6.408 -4.772 0.254 H61 W78 62 W78 H62 H19 H 0 1 N N N 49.950 9.123 -19.863 7.754 -4.776 -0.750 H62 W78 63 W78 H49 H20 H 0 1 N N N 44.828 -1.513 -17.155 -2.185 3.800 1.698 H49 W78 64 W78 H1 H21 H 0 1 N N N 45.470 2.173 -22.477 -0.033 0.962 4.915 H1 W78 65 W78 H2 H22 H 0 1 N N N 50.598 1.237 -12.918 -0.092 2.026 -4.439 H2 W78 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W78 S42 P39 SING N N 1 W78 P39 O40 DOUB N N 2 W78 P39 O38 SING N N 3 W78 P39 O6 SING N N 4 W78 N29 C28 DOUB Y N 5 W78 N29 C31 SING Y N 6 W78 C28 N27 SING Y N 7 W78 O38 C37 SING N N 8 W78 C37 C21 SING N N 9 W78 O25 C21 SING N N 10 W78 O25 C24 SING N N 11 W78 O6 C3 SING N N 12 W78 N27 C24 SING N N 13 W78 N27 C30 SING Y N 14 W78 N36 C32 SING N N 15 W78 C31 C32 DOUB Y N 16 W78 C31 C30 SING Y N 17 W78 C21 C22 SING N N 18 W78 C24 C23 SING N N 19 W78 C32 N33 SING Y N 20 W78 C30 N35 DOUB Y N 21 W78 N15 N14 SING N N 22 W78 N15 C16 DOUB N N 23 W78 N14 C13 SING N N 24 W78 C16 C11 SING N N 25 W78 N33 C34 DOUB Y N 26 W78 C3 C2 SING N N 27 W78 C3 C4 SING N N 28 W78 O7 C2 SING N N 29 W78 N35 C34 SING Y N 30 W78 C22 C23 SING N N 31 W78 C22 O26 SING N N 32 W78 C13 O17 DOUB N N 33 W78 C13 C12 SING N N 34 W78 C23 F44 SING N N 35 W78 C11 C12 DOUB Y N 36 W78 C11 N8 SING Y N 37 W78 C2 C1 SING N N 38 W78 C12 N10 SING Y N 39 W78 C4 N8 SING N N 40 W78 C4 O5 SING N N 41 W78 N8 C9 SING Y N 42 W78 O26 P20 SING N N 43 W78 N10 C9 DOUB Y N 44 W78 C1 O5 SING N N 45 W78 C1 C18 SING N N 46 W78 P20 O41 DOUB N N 47 W78 P20 O19 SING N N 48 W78 P20 S43 SING N N 49 W78 O19 C18 SING N N 50 W78 C4 H48 SING N N 51 W78 C21 H55 SING N N 52 W78 C22 H56 SING N N 53 W78 C24 H58 SING N N 54 W78 C28 H59 SING N N 55 W78 C1 H45 SING N N 56 W78 C16 H52 SING N N 57 W78 C18 H53 SING N N 58 W78 C18 H54 SING N N 59 W78 C2 H46 SING N N 60 W78 C23 H57 SING N N 61 W78 C3 H47 SING N N 62 W78 C34 H60 SING N N 63 W78 C37 H64 SING N N 64 W78 C37 H63 SING N N 65 W78 C9 H50 SING N N 66 W78 N14 H51 SING N N 67 W78 N36 H61 SING N N 68 W78 N36 H62 SING N N 69 W78 O7 H49 SING N N 70 W78 S42 H1 SING N N 71 W78 S43 H2 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W78 InChI InChI 1.06 "InChI=1S/C20H22FN9O10P2S2/c21-10-14-9(38-19(10)30-6-26-12-16(22)23-4-24-17(12)30)3-36-42(34,44)40-15-13(31)8(2-35-41(33,43)39-14)37-20(15)29-5-25-11-7(29)1-27-28-18(11)32/h1,4-6,8-10,13-15,19-20,31H,2-3H2,(H,28,32)(H,33,43)(H,34,44)(H2,22,23,24)/t8-,9-,10-,13-,14-,15-,19-,20-,41-,42-/m1/s1" W78 InChIKey InChI 1.06 DAWAAQFAHQWLHI-UWLLIWRMSA-N W78 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]4CO[P@](S)(=O)O[C@@H]5[C@H](O)[C@@H](CO[P@](S)(=O)O[C@H]4[C@H]3F)O[C@H]5n6cnc7C(=O)NN=Cc67" W78 SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH]4CO[P](S)(=O)O[CH]5[CH](O)[CH](CO[P](S)(=O)O[CH]4[CH]3F)O[CH]5n6cnc7C(=O)NN=Cc67" W78 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)CO[P@](=O)(O[C@@H]5[C@@H]([C@@H](CO[P@](=O)(O4)S)O[C@H]5n6cnc7c6C=NNC7=O)O)S)F)N" W78 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OC5C(C(COP(=O)(O4)S)OC5n6cnc7c6C=NNC7=O)O)S)F)N" # _pdbx_chem_comp_identifier.comp_id W78 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[(1~{R},3~{R},6~{R},8~{R},9~{R},10~{R},12~{R},15~{R},17~{R},18~{R})-8-(6-aminopurin-9-yl)-9-fluoranyl-18-oxidanyl-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-6~{H}-imidazo[4,5-d]pyridazin-7-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W78 "Create component" 2023-05-09 PDBE W78 "Initial release" 2023-07-26 RCSB #