data_W7D # _chem_comp.id W7D _chem_comp.name "5-[2-(8-methoxynaphthalen-2-yl)ethyl]-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H16 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-03-12 _chem_comp.pdbx_modified_date 2014-02-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 340.330 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W7D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3W7D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W7D O O O 0 1 N N N 7.243 18.250 14.388 2.004 -2.371 -0.350 O W7D 1 W7D C C C 0 1 N N N 6.415 17.310 14.457 3.159 -2.009 -0.261 C W7D 2 W7D OXT OXT O 0 1 N N N 5.198 17.358 14.597 4.152 -2.918 -0.259 OXT W7D 3 W7D CA CA C 0 1 N N N 7.026 15.917 14.510 3.477 -0.564 -0.160 CA W7D 4 W7D N N N 0 1 N N N 6.464 15.095 15.534 4.772 -0.151 0.065 N W7D 5 W7D CAR CAR C 0 1 N N N 6.797 13.792 15.634 5.080 1.153 0.159 CAR W7D 6 W7D OAC OAC O 0 1 N N N 6.342 13.055 16.523 6.235 1.475 0.359 OAC W7D 7 W7D ND2 ND2 N 0 1 N N N 7.646 13.279 14.698 4.145 2.111 0.039 ND2 W7D 8 W7D CG CG C 0 1 N N N 8.233 13.982 13.625 2.855 1.783 -0.183 CG W7D 9 W7D OD1 OD1 O 0 1 N N N 9.051 13.485 12.840 2.006 2.648 -0.292 OD1 W7D 10 W7D CB CB C 0 1 N N N 7.911 15.356 13.559 2.494 0.365 -0.295 CB W7D 11 W7D CAM CAM C 0 1 N N N 8.306 16.188 12.390 1.067 -0.052 -0.543 CAM W7D 12 W7D CAL CAL C 0 1 N N N 7.647 15.735 11.048 0.340 -0.201 0.795 CAL W7D 13 W7D CAT CAT C 0 1 Y N N 6.301 16.109 11.060 -1.087 -0.618 0.547 CAT W7D 14 W7D CAK CAK C 0 1 Y N N 5.767 17.302 10.462 -2.045 0.336 0.382 CAK W7D 15 W7D CAW CAW C 0 1 Y N N 4.343 17.645 10.561 -3.375 -0.048 0.151 CAW W7D 16 W7D CAH CAH C 0 1 Y N N 5.369 15.245 11.694 -1.406 -1.972 0.484 CAH W7D 17 W7D CAJ CAJ C 0 1 Y N N 4.005 15.634 11.827 -2.685 -2.382 0.261 CAJ W7D 18 W7D CAV CAV C 0 1 Y N N 3.494 16.777 11.258 -3.701 -1.426 0.092 CAV W7D 19 W7D CAI CAI C 0 1 Y N N 2.075 17.069 11.406 -5.033 -1.810 -0.139 CAI W7D 20 W7D CAF CAF C 0 1 Y N N 1.679 18.239 10.798 -5.992 -0.859 -0.304 CAF W7D 21 W7D CAG CAG C 0 1 Y N N 2.489 19.125 10.096 -5.677 0.496 -0.247 CAG W7D 22 W7D CAU CAU C 0 1 Y N N 3.881 18.803 9.922 -4.394 0.910 -0.024 CAU W7D 23 W7D OAP OAP O 0 1 N N N 4.800 19.541 9.327 -4.103 2.236 0.030 OAP W7D 24 W7D CAA CAA C 0 1 N N N 4.293 20.751 8.671 -5.189 3.147 -0.157 CAA W7D 25 W7D H1 H1 H 0 1 N N N 4.921 18.265 14.653 3.896 -3.848 -0.330 H1 W7D 26 W7D H2 H2 H 0 1 N N N 5.816 15.490 16.185 5.474 -0.814 0.158 H2 W7D 27 W7D H3 H3 H 0 1 N N N 7.875 12.309 14.780 4.399 3.045 0.112 H3 W7D 28 W7D H4 H4 H 0 1 N N N 9.399 16.132 12.277 0.567 0.706 -1.146 H4 W7D 29 W7D H5 H5 H 0 1 N N N 8.011 17.229 12.588 1.054 -1.004 -1.073 H5 W7D 30 W7D H6 H6 H 0 1 N N N 7.727 14.643 10.947 0.840 -0.959 1.397 H6 W7D 31 W7D H7 H7 H 0 1 N N N 8.158 16.219 10.203 0.354 0.751 1.324 H7 W7D 32 W7D H8 H8 H 0 1 N N N 6.431 17.964 9.926 -1.783 1.383 0.430 H8 W7D 33 W7D H9 H9 H 0 1 N N N 5.696 14.289 12.077 -0.626 -2.709 0.613 H9 W7D 34 W7D H10 H10 H 0 1 N N N 3.342 15.003 12.401 -2.917 -3.435 0.215 H10 W7D 35 W7D H11 H11 H 0 1 N N N 1.395 16.426 11.944 -5.294 -2.857 -0.187 H11 W7D 36 W7D H12 H12 H 0 1 N N N 0.632 18.495 10.874 -7.014 -1.160 -0.481 H12 W7D 37 W7D H13 H13 H 0 1 N N N 2.081 20.038 9.689 -6.458 1.230 -0.381 H13 W7D 38 W7D H14 H14 H 0 1 N N N 5.129 21.295 8.207 -5.635 2.984 -1.138 H14 W7D 39 W7D H15 H15 H 0 1 N N N 3.564 20.470 7.897 -5.939 2.980 0.616 H15 W7D 40 W7D H16 H16 H 0 1 N N N 3.805 21.395 9.417 -4.820 4.170 -0.090 H16 W7D 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W7D CAA OAP SING N N 1 W7D OAP CAU SING N N 2 W7D CAU CAG DOUB Y N 3 W7D CAU CAW SING Y N 4 W7D CAG CAF SING Y N 5 W7D CAK CAW DOUB Y N 6 W7D CAK CAT SING Y N 7 W7D CAW CAV SING Y N 8 W7D CAF CAI DOUB Y N 9 W7D CAL CAT SING N N 10 W7D CAL CAM SING N N 11 W7D CAT CAH DOUB Y N 12 W7D CAV CAI SING Y N 13 W7D CAV CAJ DOUB Y N 14 W7D CAH CAJ SING Y N 15 W7D CAM CB SING N N 16 W7D OD1 CG DOUB N N 17 W7D CB CG SING N N 18 W7D CB CA DOUB N N 19 W7D CG ND2 SING N N 20 W7D O C DOUB N N 21 W7D C CA SING N N 22 W7D C OXT SING N N 23 W7D CA N SING N N 24 W7D ND2 CAR SING N N 25 W7D N CAR SING N N 26 W7D CAR OAC DOUB N N 27 W7D OXT H1 SING N N 28 W7D N H2 SING N N 29 W7D ND2 H3 SING N N 30 W7D CAM H4 SING N N 31 W7D CAM H5 SING N N 32 W7D CAL H6 SING N N 33 W7D CAL H7 SING N N 34 W7D CAK H8 SING N N 35 W7D CAH H9 SING N N 36 W7D CAJ H10 SING N N 37 W7D CAI H11 SING N N 38 W7D CAF H12 SING N N 39 W7D CAG H13 SING N N 40 W7D CAA H14 SING N N 41 W7D CAA H15 SING N N 42 W7D CAA H16 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W7D SMILES ACDLabs 12.01 "O=C1NC(C(=O)O)=C(C(=O)N1)CCc3cc2c(OC)cccc2cc3" W7D InChI InChI 1.03 "InChI=1S/C18H16N2O5/c1-25-14-4-2-3-11-7-5-10(9-13(11)14)6-8-12-15(17(22)23)19-18(24)20-16(12)21/h2-5,7,9H,6,8H2,1H3,(H,22,23)(H2,19,20,21,24)" W7D InChIKey InChI 1.03 OBSDXASMOUFNPX-UHFFFAOYSA-N W7D SMILES_CANONICAL CACTVS 3.370 "COc1cccc2ccc(CCC3=C(NC(=O)NC3=O)C(O)=O)cc12" W7D SMILES CACTVS 3.370 "COc1cccc2ccc(CCC3=C(NC(=O)NC3=O)C(O)=O)cc12" W7D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "COc1cccc2c1cc(cc2)CCC3=C(NC(=O)NC3=O)C(=O)O" W7D SMILES "OpenEye OEToolkits" 1.7.6 "COc1cccc2c1cc(cc2)CCC3=C(NC(=O)NC3=O)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier W7D "SYSTEMATIC NAME" ACDLabs 12.01 "5-[2-(8-methoxynaphthalen-2-yl)ethyl]-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid" W7D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "5-[2-(8-methoxynaphthalen-2-yl)ethyl]-2,4-bis(oxidanylidene)-1H-pyrimidine-6-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W7D "Create component" 2013-03-12 PDBJ W7D "Initial release" 2014-03-05 RCSB #