data_W7R # _chem_comp.id W7R _chem_comp.name "2-[[(2~{S})-2-methylmorpholin-4-yl]methyl]-~{N}-[(3~{S})-2-oxidanylidene-5-phenyl-1,3-dihydropyrido[3,4-e][1,4]diazepin-3-yl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H27 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-27 _chem_comp.pdbx_modified_date 2023-11-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 469.535 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W7R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QNI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W7R C1 C1 C 0 1 N N S N N N 23.350 14.124 33.431 -4.180 -2.914 -0.929 C1 W7R 1 W7R C2 C2 C 0 1 N N N N N N 21.948 13.639 33.137 -3.830 -1.635 -1.696 C2 W7R 2 W7R C3 C3 C 0 1 N N N N N N 19.848 12.959 34.141 -3.595 0.766 -1.483 C3 W7R 3 W7R C7 C4 C 0 1 Y N N N N N 17.729 15.900 31.830 -3.391 3.945 1.377 C7 W7R 4 W7R C8 C5 C 0 1 Y N N N N N 17.992 16.160 33.165 -2.342 3.056 1.274 C8 W7R 5 W7R C9 C6 C 0 1 Y N N N N N 18.677 15.225 33.940 -2.400 2.018 0.343 C9 W7R 6 W7R C10 C7 C 0 1 N N N N N N 18.911 15.592 35.376 -1.279 1.060 0.227 C10 W7R 7 W7R C11 C8 C 0 1 N N R N N N 20.506 15.746 37.200 0.912 0.240 0.907 C11 W7R 8 W7R C12 C9 C 0 1 N N N N N N 22.144 15.285 38.871 3.107 0.235 -0.071 C12 W7R 9 W7R C13 C10 C 0 1 Y N N N N N 23.309 14.477 39.327 4.188 0.974 -0.765 C13 W7R 10 W7R C14 C11 C 0 1 Y N N N N N 24.299 15.039 40.128 3.891 2.121 -1.502 C14 W7R 11 W7R C15 C12 C 0 1 Y N N N N N 25.386 14.281 40.535 4.901 2.805 -2.146 C15 W7R 12 W7R C16 C13 C 0 1 Y N N N N N 25.499 12.965 40.146 6.207 2.355 -2.062 C16 W7R 13 W7R C19 C14 C 0 1 Y N N N N N 21.629 16.379 39.739 3.339 -1.183 0.238 C19 W7R 14 W7R C20 C15 C 0 1 Y N N N N N 21.444 16.157 41.099 3.985 -1.980 -0.720 C20 W7R 15 W7R C21 C16 C 0 1 Y N N N N N 20.958 17.190 41.873 4.209 -3.312 -0.451 C21 W7R 16 W7R C22 C17 C 0 1 Y N N N N N 20.824 18.607 40.089 3.219 -3.139 1.621 C22 W7R 17 W7R C24 C18 C 0 1 N N N N N N 21.133 17.168 36.793 1.356 -0.185 2.279 C24 W7R 18 W7R O1 O1 O 0 1 N N N N N N 21.312 17.532 35.636 0.831 0.317 3.251 O1 W7R 19 W7R N4 N1 N 0 1 N N N N N N 21.461 17.957 37.840 2.310 -1.098 2.456 N4 W7R 20 W7R C23 C19 C 0 1 Y N N N N N 21.306 17.643 39.212 2.950 -1.781 1.436 C23 W7R 21 W7R N3 N2 N 0 1 Y N N N N N 20.648 18.396 41.397 3.825 -3.845 0.693 N3 W7R 22 W7R C18 C20 C 0 1 Y N N N N N 23.439 13.149 38.936 5.507 0.530 -0.680 C18 W7R 23 W7R C17 C21 C 0 1 Y N N N N N 24.526 12.401 39.348 6.508 1.219 -1.333 C17 W7R 24 W7R N2 N3 N 0 1 N N N N N N 21.648 14.989 37.723 2.032 0.880 0.218 N2 W7R 25 W7R N1 N4 N 0 1 N N N N N N 19.995 15.105 35.990 -0.198 1.189 1.021 N1 W7R 26 W7R O O2 O 0 1 N N N N N N 18.117 16.328 35.960 -1.333 0.157 -0.585 O W7R 27 W7R C6 C22 C 0 1 Y N N N N N 18.141 14.719 31.260 -4.502 3.807 0.564 C6 W7R 28 W7R C5 C23 C 0 1 Y N N N N N 18.822 13.783 32.014 -4.568 2.777 -0.357 C5 W7R 29 W7R C4 C24 C 0 1 Y N N N N N 19.098 14.015 33.360 -3.521 1.887 -0.478 C4 W7R 30 W7R N N5 N 0 1 N N N N N N 21.241 13.352 34.388 -3.977 -0.478 -0.801 N W7R 31 W7R C25 C25 C 0 1 N N N N N N 21.960 12.331 35.163 -5.349 -0.394 -0.280 C25 W7R 32 W7R C26 C26 C 0 1 N N N N N N 23.357 12.813 35.454 -5.683 -1.684 0.473 C26 W7R 33 W7R O2 O3 O 0 1 N N N N N N 24.035 13.135 34.228 -5.505 -2.801 -0.403 O2 W7R 34 W7R C C27 C 0 1 N N N N N N 24.148 14.313 32.169 -4.106 -4.114 -1.875 C W7R 35 W7R H1 H1 H 0 1 N N N N N N 23.297 15.079 33.974 -3.474 -3.052 -0.110 H1 W7R 36 W7R H2 H2 H 0 1 N N N N N N 21.403 14.417 32.581 -2.801 -1.693 -2.050 H2 W7R 37 W7R H3 H3 H 0 1 N N N N N N 22.000 12.723 32.530 -4.502 -1.526 -2.546 H3 W7R 38 W7R H4 H4 H 0 1 N N N N N N 19.344 12.805 35.107 -4.339 1.007 -2.242 H4 W7R 39 W7R H5 H5 H 0 1 N N N N N N 19.839 12.019 33.569 -2.622 0.637 -1.956 H5 W7R 40 W7R H6 H6 H 0 1 N N N N N N 17.198 16.628 31.235 -3.347 4.749 2.098 H6 W7R 41 W7R H7 H7 H 0 1 N N N N N N 17.665 17.090 33.607 -1.477 3.162 1.912 H7 W7R 42 W7R H8 H8 H 0 1 N N N N N N 19.721 15.884 37.958 0.588 -0.633 0.342 H8 W7R 43 W7R H9 H9 H 0 1 N N N N N N 24.220 16.072 40.434 2.872 2.473 -1.568 H9 W7R 44 W7R H10 H10 H 0 1 N N N N N N 26.147 14.724 41.160 4.672 3.693 -2.716 H10 W7R 45 W7R H11 H11 H 0 1 N N N N N N 26.347 12.377 40.465 6.994 2.893 -2.569 H11 W7R 46 W7R H12 H12 H 0 1 N N N N N N 21.675 15.198 41.539 4.303 -1.553 -1.660 H12 W7R 47 W7R H13 H13 H 0 1 N N N N N N 20.820 17.011 42.929 4.706 -3.928 -1.186 H13 W7R 48 W7R H14 H14 H 0 1 N N N N N N 20.578 19.581 39.692 2.922 -3.618 2.543 H14 W7R 49 W7R H15 H15 H 0 1 N N N N N N 21.852 18.852 37.624 2.575 -1.299 3.367 H15 W7R 50 W7R H16 H16 H 0 1 N N N N N N 22.686 12.699 38.306 5.744 -0.355 -0.107 H16 W7R 51 W7R H17 H17 H 0 1 N N N N N N 24.614 11.369 39.043 7.530 0.875 -1.268 H17 W7R 52 W7R H18 H18 H 0 1 N N N N N N 20.457 14.299 35.620 -0.155 1.910 1.669 H18 W7R 53 W7R H19 H19 H 0 1 N N N N N N 17.932 14.522 30.219 -5.321 4.506 0.650 H19 W7R 54 W7R H20 H20 H 0 1 N N N N N N 19.144 12.860 31.555 -5.438 2.674 -0.989 H20 W7R 55 W7R H22 H22 H 0 1 N N N N N N 21.430 12.149 36.110 -5.428 0.455 0.400 H22 W7R 56 W7R H23 H23 H 0 1 N N N N N N 22.008 11.397 34.584 -6.046 -0.264 -1.107 H23 W7R 57 W7R H24 H24 H 0 1 N N N N N N 23.912 12.022 35.980 -5.021 -1.787 1.332 H24 W7R 58 W7R H25 H25 H 0 1 N N N N N N 23.307 13.710 36.089 -6.718 -1.650 0.813 H25 W7R 59 W7R H26 H26 H 0 1 N N N N N N 25.159 14.665 32.423 -4.811 -3.974 -2.694 H26 W7R 60 W7R H27 H27 H 0 1 N N N N N N 24.218 13.355 31.632 -3.096 -4.199 -2.276 H27 W7R 61 W7R H28 H28 H 0 1 N N N N N N 23.651 15.057 31.529 -4.359 -5.023 -1.329 H28 W7R 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W7R C6 C7 DOUB Y N 1 W7R C6 C5 SING Y N 2 W7R C7 C8 SING Y N 3 W7R C5 C4 DOUB Y N 4 W7R C C1 SING N N 5 W7R C2 C1 SING N N 6 W7R C2 N SING N N 7 W7R C8 C9 DOUB Y N 8 W7R C4 C9 SING Y N 9 W7R C4 C3 SING N N 10 W7R C1 O2 SING N N 11 W7R C9 C10 SING N N 12 W7R C3 N SING N N 13 W7R O2 C26 SING N N 14 W7R N C25 SING N N 15 W7R C25 C26 SING N N 16 W7R C10 O DOUB N N 17 W7R C10 N1 SING N N 18 W7R O1 C24 DOUB N N 19 W7R N1 C11 SING N N 20 W7R C24 C11 SING N N 21 W7R C24 N4 SING N N 22 W7R C11 N2 SING N N 23 W7R N2 C12 DOUB N N 24 W7R N4 C23 SING N N 25 W7R C12 C13 SING N N 26 W7R C12 C19 SING N N 27 W7R C18 C13 DOUB Y N 28 W7R C18 C17 SING Y N 29 W7R C23 C19 DOUB Y N 30 W7R C23 C22 SING Y N 31 W7R C13 C14 SING Y N 32 W7R C17 C16 DOUB Y N 33 W7R C19 C20 SING Y N 34 W7R C22 N3 DOUB Y N 35 W7R C14 C15 DOUB Y N 36 W7R C16 C15 SING Y N 37 W7R C20 C21 DOUB Y N 38 W7R N3 C21 SING Y N 39 W7R C1 H1 SING N N 40 W7R C2 H2 SING N N 41 W7R C2 H3 SING N N 42 W7R C3 H4 SING N N 43 W7R C3 H5 SING N N 44 W7R C7 H6 SING N N 45 W7R C8 H7 SING N N 46 W7R C11 H8 SING N N 47 W7R C14 H9 SING N N 48 W7R C15 H10 SING N N 49 W7R C16 H11 SING N N 50 W7R C20 H12 SING N N 51 W7R C21 H13 SING N N 52 W7R C22 H14 SING N N 53 W7R N4 H15 SING N N 54 W7R C18 H16 SING N N 55 W7R C17 H17 SING N N 56 W7R N1 H18 SING N N 57 W7R C6 H19 SING N N 58 W7R C5 H20 SING N N 59 W7R C25 H22 SING N N 60 W7R C25 H23 SING N N 61 W7R C26 H24 SING N N 62 W7R C26 H25 SING N N 63 W7R C H26 SING N N 64 W7R C H27 SING N N 65 W7R C H28 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W7R InChI InChI 1.06 "InChI=1S/C27H27N5O3/c1-18-16-32(13-14-35-18)17-20-9-5-6-10-21(20)26(33)31-25-27(34)29-23-15-28-12-11-22(23)24(30-25)19-7-3-2-4-8-19/h2-12,15,18,25H,13-14,16-17H2,1H3,(H,29,34)(H,31,33)/t18-,25+/m0/s1" W7R InChIKey InChI 1.06 JNGHRJXDWKEWQM-AVRWGWEMSA-N W7R SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CN(CCO1)Cc2ccccc2C(=O)N[C@H]3N=C(c4ccccc4)c5ccncc5NC3=O" W7R SMILES CACTVS 3.385 "C[CH]1CN(CCO1)Cc2ccccc2C(=O)N[CH]3N=C(c4ccccc4)c5ccncc5NC3=O" W7R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CN(CCO1)Cc2ccccc2C(=O)N[C@@H]3C(=O)Nc4cnccc4C(=N3)c5ccccc5" W7R SMILES "OpenEye OEToolkits" 2.0.7 "CC1CN(CCO1)Cc2ccccc2C(=O)NC3C(=O)Nc4cnccc4C(=N3)c5ccccc5" # _pdbx_chem_comp_identifier.comp_id W7R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[(2~{S})-2-methylmorpholin-4-yl]methyl]-~{N}-[(3~{S})-2-oxidanylidene-5-phenyl-1,3-dihydropyrido[3,4-e][1,4]diazepin-3-yl]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W7R "Create component" 2023-09-27 PDBE W7R "Initial release" 2023-11-22 RCSB #