data_W89 # _chem_comp.id W89 _chem_comp.name "2-(morpholin-4-ylmethyl)-~{N}-[(3~{S})-2-oxidanylidene-5-phenyl-1,3-dihydro-1,4-benzodiazepin-3-yl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H26 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-27 _chem_comp.pdbx_modified_date 2023-11-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 454.520 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W89 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QNG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W89 C1 C1 C 0 1 N N R N N N 19.524 18.639 35.418 -0.773 0.053 -0.876 C1 W89 1 W89 C2 C2 C 0 1 N N N N N N 21.142 18.085 37.111 -2.983 0.249 0.049 C2 W89 2 W89 C3 C3 C 0 1 Y N N N N N 22.302 17.276 37.572 -4.035 1.108 0.642 C3 W89 3 W89 C7 C4 C 0 1 Y N N N N N 24.328 17.069 38.863 -4.674 3.096 1.827 C7 W89 4 W89 C8 C5 C 0 1 Y N N N N N 23.242 17.821 38.446 -3.690 2.301 1.277 C8 W89 5 W89 C9 C6 C 0 1 Y N N N N N 20.603 19.146 38.012 -3.288 -1.180 -0.123 C9 W89 6 W89 C10 C7 C 0 1 Y N N N N N 20.383 18.862 39.360 -3.993 -1.823 0.906 C10 W89 7 W89 C11 C8 C 0 1 Y N N N N N 19.887 19.837 40.205 -4.308 -3.158 0.808 C11 W89 8 W89 C12 C9 C 0 1 Y N N N N N 19.605 21.101 39.726 -3.929 -3.880 -0.312 C12 W89 9 W89 C13 C10 C 0 1 Y N N N N N 19.811 21.411 38.393 -3.237 -3.263 -1.330 C13 W89 10 W89 C14 C11 C 0 1 Y N N N N N 20.311 20.439 37.528 -2.909 -1.908 -1.249 C14 W89 11 W89 C15 C12 C 0 1 N N N N N N 20.185 20.038 35.101 -1.220 -0.480 -2.210 C15 W89 12 W89 C16 C13 C 0 1 Y N N N N N 18.004 18.184 32.000 2.613 1.717 -0.417 C16 W89 13 W89 C19 C14 C 0 1 Y N N N N N 17.734 17.583 29.303 4.802 3.378 -0.763 C19 W89 14 W89 C20 C15 C 0 1 Y N N N N N 18.394 16.704 30.142 4.800 2.445 0.259 C20 W89 15 W89 C21 C16 C 0 1 Y N N N N N 18.544 16.988 31.498 3.713 1.614 0.437 C21 W89 16 W89 C22 C17 C 0 1 N N N N N N 19.269 16.007 32.391 3.712 0.599 1.550 C22 W89 17 W89 C24 C18 C 0 1 N N N N N N 22.752 16.696 31.180 5.743 -2.119 -0.086 C24 W89 18 W89 O1 O1 O 0 1 N N N N N N 20.401 20.422 33.954 -0.655 -0.104 -3.216 O1 W89 19 W89 N2 N1 N 0 1 N N N N N N 20.512 20.793 36.174 -2.218 -1.355 -2.316 N2 W89 20 W89 C6 C19 C 0 1 Y N N N N N 24.495 15.781 38.409 -6.001 2.713 1.749 C6 W89 21 W89 C5 C20 C 0 1 Y N N N N N 23.578 15.236 37.538 -6.350 1.533 1.116 C5 W89 22 W89 C4 C21 C 0 1 Y N N N N N 22.489 15.977 37.113 -5.375 0.729 0.563 C4 W89 23 W89 N1 N2 N 0 1 N N N N N N 20.685 17.831 35.936 -1.872 0.809 -0.277 N1 W89 24 W89 N N3 N 0 1 N N N N N N 19.150 18.090 34.134 0.385 0.932 -1.059 N W89 25 W89 C C22 C 0 1 N N N N N N 18.115 18.572 33.445 1.445 0.830 -0.233 C W89 26 W89 O O2 O 0 1 N N N N N N 17.283 19.307 33.961 1.440 0.010 0.664 O W89 27 W89 C18 C23 C 0 1 Y N N N N N 17.208 18.752 29.802 3.713 3.489 -1.609 C18 W89 28 W89 C17 C24 C 0 1 Y N N N N N 17.340 19.057 31.142 2.619 2.664 -1.442 C17 W89 29 W89 N3 N4 N 0 1 N N N N N N 20.722 15.867 32.180 4.057 -0.722 1.008 N3 W89 30 W89 C26 C25 C 0 1 N N N N N N 21.429 15.694 33.459 3.837 -1.776 2.010 C26 W89 31 W89 C25 C26 C 0 1 N N N N N N 22.887 15.436 33.204 4.151 -3.138 1.386 C25 W89 32 W89 O2 O3 O 0 1 N N N N N N 23.472 16.471 32.403 5.494 -3.133 0.892 O2 W89 33 W89 C23 C27 C 0 1 N N N N N N 21.314 16.994 31.451 5.445 -0.746 0.523 C23 W89 34 W89 H1 H1 H 0 1 N N N N N N 18.695 18.723 36.136 -0.502 -0.777 -0.224 H1 W89 35 W89 H2 H2 H 0 1 N N N N N N 25.047 17.495 39.547 -4.408 4.020 2.319 H2 W89 36 W89 H3 H3 H 0 1 N N N N N N 23.123 18.834 38.800 -2.654 2.601 1.339 H3 W89 37 W89 H4 H4 H 0 1 N N N N N N 20.601 17.877 39.745 -4.291 -1.265 1.781 H4 W89 38 W89 H5 H5 H 0 1 N N N N N N 19.719 19.609 41.247 -4.851 -3.645 1.605 H5 W89 39 W89 H6 H6 H 0 1 N N N N N N 19.220 21.854 40.397 -4.175 -4.929 -0.387 H6 W89 40 W89 H7 H7 H 0 1 N N N N N N 19.586 22.401 38.025 -2.944 -3.832 -2.200 H7 W89 41 W89 H8 H8 H 0 1 N N N N N N 17.631 17.351 28.253 5.656 4.026 -0.898 H8 W89 42 W89 H9 H9 H 0 1 N N N N N N 18.798 15.786 29.741 5.653 2.363 0.916 H9 W89 43 W89 H10 H10 H 0 1 N N N N N N 19.113 16.326 33.432 4.445 0.886 2.304 H10 W89 44 W89 H11 H11 H 0 1 N N N N N N 18.813 15.018 32.238 2.722 0.558 2.004 H11 W89 45 W89 H12 H12 H 0 1 N N N N N N 22.820 15.796 30.552 6.787 -2.161 -0.395 H12 W89 46 W89 H13 H13 H 0 1 N N N N N N 23.202 17.548 30.650 5.099 -2.281 -0.950 H13 W89 47 W89 H14 H14 H 0 1 N N N N N N 20.934 21.682 35.994 -2.481 -1.627 -3.209 H14 W89 48 W89 H15 H15 H 0 1 N N N N N N 25.344 15.198 38.735 -6.767 3.339 2.182 H15 W89 49 W89 H16 H16 H 0 1 N N N N N N 23.709 14.224 37.184 -7.387 1.239 1.059 H16 W89 50 W89 H17 H17 H 0 1 N N N N N N 21.781 15.544 36.422 -5.649 -0.191 0.068 H17 W89 51 W89 H18 H18 H 0 1 N N N N N N 19.679 17.332 33.754 0.388 1.587 -1.775 H18 W89 52 W89 H19 H19 H 0 1 N N N N N N 16.690 19.433 29.143 3.721 4.219 -2.405 H19 W89 53 W89 H20 H20 H 0 1 N N N N N N 16.926 19.977 31.527 1.770 2.751 -2.104 H20 W89 54 W89 H22 H22 H 0 1 N N N N N N 21.320 16.607 34.063 4.491 -1.607 2.865 H22 W89 55 W89 H23 H23 H 0 1 N N N N N N 20.997 14.841 34.003 2.798 -1.756 2.337 H23 W89 56 W89 H24 H24 H 0 1 N N N N N N 22.993 14.475 32.679 4.045 -3.917 2.141 H24 W89 57 W89 H25 H25 H 0 1 N N N N N N 23.415 15.388 34.168 3.461 -3.330 0.565 H25 W89 58 W89 H26 H26 H 0 1 N N N N N N 21.235 17.908 32.058 6.125 -0.561 1.355 H26 W89 59 W89 H27 H27 H 0 1 N N N N N N 20.782 17.138 30.499 5.578 0.025 -0.236 H27 W89 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W89 C19 C18 DOUB Y N 1 W89 C19 C20 SING Y N 2 W89 C18 C17 SING Y N 3 W89 C20 C21 DOUB Y N 4 W89 C17 C16 DOUB Y N 5 W89 C24 C23 SING N N 6 W89 C24 O2 SING N N 7 W89 C23 N3 SING N N 8 W89 C21 C16 SING Y N 9 W89 C21 C22 SING N N 10 W89 C16 C SING N N 11 W89 N3 C22 SING N N 12 W89 N3 C26 SING N N 13 W89 O2 C25 SING N N 14 W89 C25 C26 SING N N 15 W89 C O DOUB N N 16 W89 C N SING N N 17 W89 O1 C15 DOUB N N 18 W89 N C1 SING N N 19 W89 C15 C1 SING N N 20 W89 C15 N2 SING N N 21 W89 C1 N1 SING N N 22 W89 N1 C2 DOUB N N 23 W89 N2 C14 SING N N 24 W89 C2 C3 SING N N 25 W89 C2 C9 SING N N 26 W89 C4 C5 DOUB Y N 27 W89 C4 C3 SING Y N 28 W89 C14 C9 DOUB Y N 29 W89 C14 C13 SING Y N 30 W89 C5 C6 SING Y N 31 W89 C3 C8 DOUB Y N 32 W89 C9 C10 SING Y N 33 W89 C13 C12 DOUB Y N 34 W89 C6 C7 DOUB Y N 35 W89 C8 C7 SING Y N 36 W89 C10 C11 DOUB Y N 37 W89 C12 C11 SING Y N 38 W89 C1 H1 SING N N 39 W89 C7 H2 SING N N 40 W89 C8 H3 SING N N 41 W89 C10 H4 SING N N 42 W89 C11 H5 SING N N 43 W89 C12 H6 SING N N 44 W89 C13 H7 SING N N 45 W89 C19 H8 SING N N 46 W89 C20 H9 SING N N 47 W89 C22 H10 SING N N 48 W89 C22 H11 SING N N 49 W89 C24 H12 SING N N 50 W89 C24 H13 SING N N 51 W89 N2 H14 SING N N 52 W89 C6 H15 SING N N 53 W89 C5 H16 SING N N 54 W89 C4 H17 SING N N 55 W89 N H18 SING N N 56 W89 C18 H19 SING N N 57 W89 C17 H20 SING N N 58 W89 C26 H22 SING N N 59 W89 C26 H23 SING N N 60 W89 C25 H24 SING N N 61 W89 C25 H25 SING N N 62 W89 C23 H26 SING N N 63 W89 C23 H27 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W89 InChI InChI 1.06 "InChI=1S/C27H26N4O3/c32-26(21-11-5-4-10-20(21)18-31-14-16-34-17-15-31)30-25-27(33)28-23-13-7-6-12-22(23)24(29-25)19-8-2-1-3-9-19/h1-13,25H,14-18H2,(H,28,33)(H,30,32)/t25-/m1/s1" W89 InChIKey InChI 1.06 NBCFKFUKUXVZQS-RUZDIDTESA-N W89 SMILES_CANONICAL CACTVS 3.385 "O=C1Nc2ccccc2C(=N[C@@H]1NC(=O)c3ccccc3CN4CCOCC4)c5ccccc5" W89 SMILES CACTVS 3.385 "O=C1Nc2ccccc2C(=N[CH]1NC(=O)c3ccccc3CN4CCOCC4)c5ccccc5" W89 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C2=N[C@@H](C(=O)Nc3c2cccc3)NC(=O)c4ccccc4CN5CCOCC5" W89 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C2=NC(C(=O)Nc3c2cccc3)NC(=O)c4ccccc4CN5CCOCC5" # _pdbx_chem_comp_identifier.comp_id W89 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-(morpholin-4-ylmethyl)-~{N}-[(3~{S})-2-oxidanylidene-5-phenyl-1,3-dihydro-1,4-benzodiazepin-3-yl]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W89 "Create component" 2023-09-27 PDBE W89 "Initial release" 2023-11-22 RCSB #