data_W8D # _chem_comp.id W8D _chem_comp.name "3-{[(2R)-oxolan-2-yl]methyl}-3H-purin-6-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H13 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-29 _chem_comp.pdbx_modified_date 2020-12-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 219.243 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W8D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5RVF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W8D C10 C1 C 0 1 N N R -44.521 -28.102 1.663 -2.137 -0.491 -0.109 C10 W8D 1 W8D C13 C2 C 0 1 N N N -43.695 -26.746 0.010 -4.506 0.079 -0.045 C13 W8D 2 W8D C15 C3 C 0 1 Y N N -47.287 -29.101 3.183 0.332 1.407 0.757 C15 W8D 3 W8D C02 C4 C 0 1 Y N N -47.680 -28.984 5.403 2.491 1.194 -0.045 C02 W8D 4 W8D C03 C5 C 0 1 Y N N -46.259 -29.124 5.612 2.329 -0.198 -0.144 C03 W8D 5 W8D C05 C6 C 0 1 Y N N -44.262 -29.362 6.325 2.409 -2.334 -0.412 C05 W8D 6 W8D C07 C7 C 0 1 Y N N -45.489 -29.282 4.583 1.090 -0.759 0.240 C07 W8D 7 W8D C09 C8 C 0 1 N N N -45.110 -29.422 2.091 -1.198 -0.455 1.098 C09 W8D 8 W8D C12 C9 C 0 1 N N N -45.188 -26.395 0.177 -3.705 0.898 -1.095 C12 W8D 9 W8D C14 C10 C 0 1 N N N -43.584 -28.097 0.655 -3.509 -1.052 0.311 C14 W8D 10 W8D N01 N1 N 0 1 N N N -48.546 -28.818 6.531 3.676 1.783 -0.406 N01 W8D 11 W8D N04 N2 N 0 1 Y N N -45.494 -29.149 6.759 3.103 -1.223 -0.538 N04 W8D 12 W8D N06 N3 N 0 1 Y N N -44.229 -29.418 5.011 1.195 -2.066 0.055 N06 W8D 13 W8D N08 N4 N 0 1 Y N N -45.987 -29.265 3.323 0.101 0.086 0.691 N08 W8D 14 W8D N16 N5 N 0 1 Y N N -48.140 -28.967 4.218 1.475 1.937 0.405 N16 W8D 15 W8D O11 O1 O 0 1 N N N -45.691 -27.287 1.016 -2.349 0.842 -0.604 O11 W8D 16 W8D H101 H1 H 0 0 N N N -44.160 -27.558 2.548 -1.707 -1.113 -0.895 H101 W8D 17 W8D H132 H2 H 0 0 N N N -43.418 -26.793 -1.053 -4.733 0.686 0.831 H132 W8D 18 W8D H131 H3 H 0 0 N N N -43.058 -26.011 0.523 -5.418 -0.328 -0.482 H131 W8D 19 W8D H151 H4 H 0 0 N N N -47.692 -29.072 2.182 -0.456 2.056 1.109 H151 W8D 20 W8D H051 H5 H 0 0 N N N -43.399 -29.475 6.964 2.774 -3.321 -0.655 H051 W8D 21 W8D H092 H6 H 0 0 N N N -45.718 -29.826 1.268 -1.628 0.178 1.874 H092 W8D 22 W8D H091 H7 H 0 0 N N N -44.292 -30.121 2.321 -1.066 -1.465 1.486 H091 W8D 23 W8D H121 H8 H 0 0 N N N -45.296 -25.381 0.590 -3.775 0.434 -2.079 H121 W8D 24 W8D H122 H9 H 0 0 N N N -45.703 -26.453 -0.793 -4.060 1.928 -1.130 H122 W8D 25 W8D H141 H10 H 0 0 N N N -43.801 -28.891 -0.075 -3.741 -1.956 -0.253 H141 W8D 26 W8D H142 H11 H 0 0 N N N -42.575 -28.244 1.068 -3.527 -1.253 1.382 H142 W8D 27 W8D H011 H12 H 0 0 N N N -49.487 -28.699 6.215 4.409 1.238 -0.732 H011 W8D 28 W8D H012 H13 H 0 0 N N N -48.491 -29.627 7.116 3.781 2.745 -0.336 H012 W8D 29 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W8D C13 C12 SING N N 1 W8D C13 C14 SING N N 2 W8D C12 O11 SING N N 3 W8D C14 C10 SING N N 4 W8D O11 C10 SING N N 5 W8D C10 C09 SING N N 6 W8D C09 N08 SING N N 7 W8D C15 N08 SING Y N 8 W8D C15 N16 DOUB Y N 9 W8D N08 C07 SING Y N 10 W8D N16 C02 SING Y N 11 W8D C07 N06 DOUB Y N 12 W8D C07 C03 SING Y N 13 W8D N06 C05 SING Y N 14 W8D C02 C03 DOUB Y N 15 W8D C02 N01 SING N N 16 W8D C03 N04 SING Y N 17 W8D C05 N04 DOUB Y N 18 W8D C10 H101 SING N N 19 W8D C13 H132 SING N N 20 W8D C13 H131 SING N N 21 W8D C15 H151 SING N N 22 W8D C05 H051 SING N N 23 W8D C09 H092 SING N N 24 W8D C09 H091 SING N N 25 W8D C12 H121 SING N N 26 W8D C12 H122 SING N N 27 W8D C14 H141 SING N N 28 W8D C14 H142 SING N N 29 W8D N01 H011 SING N N 30 W8D N01 H012 SING N N 31 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W8D SMILES ACDLabs 12.01 "C3(CN2C=NC(=C1N=CN=C12)N)CCCO3" W8D InChI InChI 1.03 "InChI=1S/C10H13N5O/c11-9-8-10(13-5-12-8)15(6-14-9)4-7-2-1-3-16-7/h5-7H,1-4,11H2/t7-/m1/s1" W8D InChIKey InChI 1.03 GVRQWFFFCDLKPP-SSDOTTSWSA-N W8D SMILES_CANONICAL CACTVS 3.385 "Nc1ncn(C[C@H]2CCCO2)c3ncnc13" W8D SMILES CACTVS 3.385 "Nc1ncn(C[CH]2CCCO2)c3ncnc13" W8D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc-2c(ncn(c2n1)C[C@H]3CCCO3)N" W8D SMILES "OpenEye OEToolkits" 2.0.7 "c1nc-2c(ncn(c2n1)CC3CCCO3)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier W8D "SYSTEMATIC NAME" ACDLabs 12.01 "3-{[(2R)-oxolan-2-yl]methyl}-3H-purin-6-amine" W8D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[[(2~{R})-oxolan-2-yl]methyl]purin-6-amine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W8D "Create component" 2020-09-29 RCSB W8D "Initial release" 2020-12-16 RCSB ##