data_W9D # _chem_comp.id W9D _chem_comp.name "5-{[4-{[(1S)-2-hydroxy-1-phenylethyl]amino}-5-(1,3,4-oxadiazol-2-yl)pyrimidin-2-yl]amino}-3,3-dimethyl-2-benzofuran-1(3H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H22 N6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-01 _chem_comp.pdbx_modified_date 2021-01-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 458.469 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W9D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KAC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W9D C18 C1 C 0 1 Y N N 30.220 -83.420 -5.007 5.053 -2.147 -1.017 C18 W9D 1 W9D C17 C2 C 0 1 Y N N 29.085 -82.639 -5.196 5.575 -1.075 -0.288 C17 W9D 2 W9D C16 C3 C 0 1 Y N N 28.167 -82.491 -4.179 4.706 -0.217 0.397 C16 W9D 3 W9D C15 C4 C 0 1 Y N N 28.358 -83.111 -2.956 3.351 -0.425 0.356 C15 W9D 4 W9D C19 C5 C 0 1 Y N N 30.425 -84.032 -3.783 3.693 -2.352 -1.056 C19 W9D 5 W9D C20 C6 C 0 1 Y N N 24.890 -80.547 -0.854 -5.100 -2.508 1.383 C20 W9D 6 W9D C21 C7 C 0 1 Y N N 23.584 -80.771 -1.252 -6.336 -2.525 2.002 C21 W9D 7 W9D C22 C8 C 0 1 Y N N 22.873 -81.830 -0.728 -7.253 -1.525 1.742 C22 W9D 8 W9D C23 C9 C 0 1 Y N N 23.468 -82.662 0.197 -6.935 -0.507 0.862 C23 W9D 9 W9D C24 C10 C 0 1 Y N N 24.777 -82.439 0.599 -5.700 -0.490 0.242 C24 W9D 10 W9D C11 C11 C 0 1 N N N 26.926 -79.670 1.227 -3.562 -2.018 -1.591 C11 W9D 11 W9D C12 C12 C 0 1 Y N N 25.501 -81.370 0.085 -4.782 -1.491 0.502 C12 W9D 12 W9D C27 C13 C 0 1 N N N 28.627 -81.855 -6.347 6.951 -0.605 -0.059 C27 W9D 13 W9D C1 C14 C 0 1 Y N N 28.536 -84.022 2.294 -1.085 1.469 -0.355 C1 W9D 14 W9D C2 C15 C 0 1 Y N N 29.346 -85.075 1.875 0.297 1.656 -0.429 C2 W9D 15 W9D N3 N1 N 0 1 Y N N 29.764 -85.248 0.624 1.089 0.597 -0.444 N3 W9D 16 W9D C4 C16 C 0 1 Y N N 29.323 -84.345 -0.258 0.591 -0.631 -0.391 C4 W9D 17 W9D N5 N2 N 0 1 Y N N 28.530 -83.300 0.005 -0.712 -0.858 -0.319 N5 W9D 18 W9D C6 C17 C 0 1 Y N N 28.134 -83.108 1.273 -1.577 0.149 -0.294 C6 W9D 19 W9D C7 C18 C 0 1 Y N N 28.213 -83.904 3.716 -2.005 2.623 -0.335 C7 W9D 20 W9D N8 N3 N 0 1 N N N 27.395 -82.015 1.552 -2.935 -0.092 -0.220 N8 W9D 21 W9D N9 N4 N 0 1 N N N 29.751 -84.540 -1.534 1.459 -1.709 -0.415 N9 W9D 22 W9D C10 C19 C 0 1 N N S 26.896 -81.050 0.587 -3.433 -1.469 -0.169 C10 W9D 23 W9D O13 O1 O 0 1 N N N 26.075 -79.630 2.361 -4.562 -1.281 -2.297 O13 W9D 24 W9D C14 C20 C 0 1 Y N N 29.500 -83.879 -2.751 2.834 -1.496 -0.372 C14 W9D 25 W9D C25 C21 C 0 1 N N N 27.063 -81.562 -4.620 5.574 0.816 1.071 C25 W9D 26 W9D O26 O2 O 0 1 N N N 27.432 -81.268 -6.018 6.947 0.486 0.725 O26 W9D 27 W9D C28 C22 C 0 1 N N N 25.690 -82.217 -4.633 5.223 2.213 0.556 C28 W9D 28 W9D C29 C23 C 0 1 N N N 27.062 -80.247 -3.859 5.384 0.752 2.588 C29 W9D 29 W9D O30 O3 O 0 1 N N N 29.178 -81.612 -7.395 7.948 -1.130 -0.514 O30 W9D 30 W9D O31 O4 O 0 1 Y N N 27.273 -82.988 4.097 -1.658 3.925 -0.382 O31 W9D 31 W9D C32 C24 C 0 1 Y N N 27.249 -83.094 5.447 -2.806 4.625 -0.341 C32 W9D 32 W9D N33 N5 N 0 1 Y N N 28.127 -84.024 5.852 -3.787 3.770 -0.273 N33 W9D 33 W9D N34 N6 N 0 1 Y N N 28.734 -84.535 4.713 -3.316 2.573 -0.273 N34 W9D 34 W9D H43 H1 H 0 1 N N N 30.934 -83.548 -5.807 5.716 -2.811 -1.552 H43 W9D 35 W9D H42 H2 H 0 1 N N N 27.627 -83.000 -2.168 2.685 0.239 0.886 H42 W9D 36 W9D H44 H3 H 0 1 N N N 31.308 -84.633 -3.626 3.289 -3.178 -1.623 H44 W9D 37 W9D H45 H4 H 0 1 N N N 25.442 -79.722 -1.279 -4.382 -3.287 1.589 H45 W9D 38 W9D H46 H5 H 0 1 N N N 23.121 -80.115 -1.974 -6.584 -3.320 2.690 H46 W9D 39 W9D H47 H6 H 0 1 N N N 21.855 -82.007 -1.041 -8.219 -1.538 2.226 H47 W9D 40 W9D H48 H7 H 0 1 N N N 22.912 -83.491 0.610 -7.653 0.275 0.658 H48 W9D 41 W9D H49 H8 H 0 1 N N N 25.237 -83.102 1.317 -5.452 0.305 -0.445 H49 W9D 42 W9D H39 H9 H 0 1 N N N 27.955 -79.438 1.538 -2.606 -1.920 -2.106 H39 W9D 43 W9D H40 H10 H 0 1 N N N 26.587 -78.923 0.494 -3.847 -3.069 -1.550 H40 W9D 44 W9D H35 H11 H 0 1 N N N 29.655 -85.799 2.615 0.714 2.651 -0.474 H35 W9D 45 W9D H36 H12 H 0 1 N N N 27.947 -81.482 2.193 -3.560 0.650 -0.202 H36 W9D 46 W9D H37 H13 H 0 1 N N N 30.375 -85.316 -1.627 1.110 -2.612 -0.463 H37 W9D 47 W9D H38 H14 H 0 1 N N N 27.573 -81.035 -0.280 -2.736 -2.086 0.397 H38 W9D 48 W9D H41 H15 H 0 1 N N N 26.104 -78.763 2.749 -4.697 -1.575 -3.208 H41 W9D 49 W9D H52 H16 H 0 1 N N N 25.384 -82.450 -3.602 4.176 2.428 0.774 H52 W9D 50 W9D H50 H17 H 0 1 N N N 24.960 -81.529 -5.085 5.855 2.951 1.049 H50 W9D 51 W9D H51 H18 H 0 1 N N N 25.732 -83.146 -5.221 5.386 2.256 -0.521 H51 W9D 52 W9D H53 H19 H 0 1 N N N 26.790 -80.431 -2.809 5.662 -0.238 2.948 H53 W9D 53 W9D H54 H20 H 0 1 N N N 28.064 -79.796 -3.904 6.016 1.502 3.065 H54 W9D 54 W9D H55 H21 H 0 1 N N N 26.331 -79.562 -4.313 4.340 0.948 2.832 H55 W9D 55 W9D H56 H22 H 0 1 N N N 26.615 -82.514 6.102 -2.897 5.701 -0.361 H56 W9D 56 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W9D O30 C27 DOUB N N 1 W9D C27 O26 SING N N 2 W9D C27 C17 SING N N 3 W9D O26 C25 SING N N 4 W9D C17 C18 DOUB Y N 5 W9D C17 C16 SING Y N 6 W9D C18 C19 SING Y N 7 W9D C28 C25 SING N N 8 W9D C25 C16 SING N N 9 W9D C25 C29 SING N N 10 W9D C16 C15 DOUB Y N 11 W9D C19 C14 DOUB Y N 12 W9D C15 C14 SING Y N 13 W9D C14 N9 SING N N 14 W9D N9 C4 SING N N 15 W9D C21 C20 DOUB Y N 16 W9D C21 C22 SING Y N 17 W9D C20 C12 SING Y N 18 W9D C22 C23 DOUB Y N 19 W9D C4 N5 DOUB Y N 20 W9D C4 N3 SING Y N 21 W9D N5 C6 SING Y N 22 W9D C12 C10 SING N N 23 W9D C12 C24 DOUB Y N 24 W9D C23 C24 SING Y N 25 W9D C10 C11 SING N N 26 W9D C10 N8 SING N N 27 W9D N3 C2 DOUB Y N 28 W9D C11 O13 SING N N 29 W9D C6 N8 SING N N 30 W9D C6 C1 DOUB Y N 31 W9D C2 C1 SING Y N 32 W9D C1 C7 SING N N 33 W9D C7 O31 SING Y N 34 W9D C7 N34 DOUB Y N 35 W9D O31 C32 SING Y N 36 W9D N34 N33 SING Y N 37 W9D C32 N33 DOUB Y N 38 W9D C18 H43 SING N N 39 W9D C15 H42 SING N N 40 W9D C19 H44 SING N N 41 W9D C20 H45 SING N N 42 W9D C21 H46 SING N N 43 W9D C22 H47 SING N N 44 W9D C23 H48 SING N N 45 W9D C24 H49 SING N N 46 W9D C11 H39 SING N N 47 W9D C11 H40 SING N N 48 W9D C2 H35 SING N N 49 W9D N8 H36 SING N N 50 W9D N9 H37 SING N N 51 W9D C10 H38 SING N N 52 W9D O13 H41 SING N N 53 W9D C28 H52 SING N N 54 W9D C28 H50 SING N N 55 W9D C28 H51 SING N N 56 W9D C29 H53 SING N N 57 W9D C29 H54 SING N N 58 W9D C29 H55 SING N N 59 W9D C32 H56 SING N N 60 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W9D SMILES ACDLabs 12.01 "c1cc(cc2c1C(OC2(C)C)=O)Nc4ncc(c3ocnn3)c(n4)NC(CO)c5ccccc5" W9D InChI InChI 1.03 "InChI=1S/C24H22N6O4/c1-24(2)18-10-15(8-9-16(18)22(32)34-24)27-23-25-11-17(21-30-26-13-33-21)20(29-23)28-19(12-31)14-6-4-3-5-7-14/h3-11,13,19,31H,12H2,1-2H3,(H2,25,27,28,29)/t19-/m1/s1" W9D InChIKey InChI 1.03 RVSSNRBUPQUIEG-LJQANCHMSA-N W9D SMILES_CANONICAL CACTVS 3.385 "CC1(C)OC(=O)c2ccc(Nc3ncc(c(N[C@H](CO)c4ccccc4)n3)c5ocnn5)cc12" W9D SMILES CACTVS 3.385 "CC1(C)OC(=O)c2ccc(Nc3ncc(c(N[CH](CO)c4ccccc4)n3)c5ocnn5)cc12" W9D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(c2cc(ccc2C(=O)O1)Nc3ncc(c(n3)N[C@H](CO)c4ccccc4)c5nnco5)C" W9D SMILES "OpenEye OEToolkits" 2.0.7 "CC1(c2cc(ccc2C(=O)O1)Nc3ncc(c(n3)NC(CO)c4ccccc4)c5nnco5)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier W9D "SYSTEMATIC NAME" ACDLabs 12.01 "5-{[4-{[(1S)-2-hydroxy-1-phenylethyl]amino}-5-(1,3,4-oxadiazol-2-yl)pyrimidin-2-yl]amino}-3,3-dimethyl-2-benzofuran-1(3H)-one" W9D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3,3-dimethyl-5-[[5-(1,3,4-oxadiazol-2-yl)-4-[[(1~{S})-2-oxidanyl-1-phenyl-ethyl]amino]pyrimidin-2-yl]amino]-2-benzofuran-1-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W9D "Create component" 2020-10-01 RCSB W9D "Initial release" 2021-01-13 RCSB ##