data_W9N # _chem_comp.id W9N _chem_comp.name "1-{(1R,3r,5S)-3-[(3M)-4-methyl-3-{3-methyl-4-[(1-methyl-1H-benzimidazol-5-yl)oxy]phenyl}-1H-pyrazolo[3,4-d]pyrimidin-1-yl]-8-azabicyclo[3.2.1]octan-8-yl}propan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H33 N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-27 _chem_comp.pdbx_modified_date 2024-06-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 535.639 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W9N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8U8X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W9N N6 N1 N 0 1 Y N N N N N -21.681 14.223 16.586 -2.078 0.722 1.303 N6 W9N 1 W9N C18 C1 C 0 1 Y N N N N N -20.779 11.655 17.060 1.339 0.680 0.092 C18 W9N 2 W9N N5 N2 N 0 1 Y N N N N N -21.787 15.595 16.609 -3.231 1.220 0.687 N5 W9N 3 W9N C14 C2 C 0 1 N N R N N N -21.874 16.332 15.360 -4.605 0.884 1.068 C14 W9N 4 W9N C13 C3 C 0 1 N N N N N N -20.595 15.983 14.529 -5.497 0.897 -0.177 C13 W9N 5 W9N C12 C4 C 0 1 N N R N N N -20.673 16.472 13.063 -5.063 -0.243 -1.112 C12 W9N 6 W9N C17 C5 C 0 1 Y N N N N N -21.500 12.402 18.019 0.397 0.934 1.089 C17 W9N 7 W9N C16 C6 C 0 1 N N N N N N -21.354 14.147 21.150 0.664 2.987 -1.370 C16 W9N 8 W9N C15 C7 C 0 1 N N N N N N -23.121 16.031 14.546 -4.632 -0.508 1.706 C15 W9N 9 W9N N3 N3 N 0 1 Y N N N N N -21.808 17.362 18.364 -3.552 2.794 -1.208 N3 W9N 10 W9N C10 C8 C 0 1 N N S N N N -23.006 16.691 13.149 -4.259 -1.551 0.640 C10 W9N 11 W9N C8 C9 C 0 1 Y N N N N N -21.611 14.992 18.711 -1.467 2.106 -0.348 C8 W9N 12 W9N C22 C10 C 0 1 Y N N N N N -22.304 11.744 19.009 0.784 0.921 2.428 C22 W9N 13 W9N C7 C11 C 0 1 Y N N N N N -21.582 13.837 17.860 -1.011 1.219 0.725 C7 W9N 14 W9N N1 N4 N 0 1 Y N N N N N -21.594 16.467 20.623 -1.593 3.597 -2.140 N1 W9N 15 W9N C4 C12 C 0 1 Y N N N N N -21.742 16.102 17.884 -2.878 2.066 -0.323 C4 W9N 16 W9N C19 C13 C 0 1 Y N N N N N -20.784 10.244 17.168 2.648 0.417 0.434 C19 W9N 17 W9N C20 C14 C 0 1 Y N N N N N -21.510 9.618 18.197 3.030 0.404 1.769 C20 W9N 18 W9N C21 C15 C 0 1 Y N N N N N -22.291 10.339 19.124 2.095 0.657 2.764 C21 W9N 19 W9N C2 C16 C 0 1 Y N N N N N -21.732 17.458 19.703 -2.912 3.535 -2.087 C2 W9N 20 W9N C24 C17 C 0 1 Y N N N N N -20.419 7.648 18.926 5.189 -0.164 1.103 C24 W9N 21 W9N C25 C18 C 0 1 Y N N N N N -20.290 6.243 18.753 5.743 0.853 0.330 C25 W9N 22 W9N C26 C19 C 0 1 Y N N N N N -19.240 5.557 19.428 6.628 0.555 -0.683 C26 W9N 23 W9N C27 C20 C 0 1 Y N N N N N -18.387 6.332 20.241 6.971 -0.766 -0.936 C27 W9N 24 W9N C28 C21 C 0 1 Y N N N N N -18.510 7.709 20.419 6.417 -1.798 -0.160 C28 W9N 25 W9N C29 C22 C 0 1 Y N N N N N -19.543 8.415 19.752 5.520 -1.483 0.864 C29 W9N 26 W9N C31 C23 C 0 1 Y N N N N N -16.893 7.061 21.567 7.740 -2.721 -1.618 C31 W9N 27 W9N C33 C24 C 0 1 N N N N N N -16.783 4.540 21.175 8.608 -0.718 -2.880 C33 W9N 28 W9N C34 C25 C 0 1 N N N N N N -21.596 18.791 13.004 -6.279 -2.430 -0.635 C34 W9N 29 W9N C35 C26 C 0 1 N N N N N N -20.293 19.261 12.812 -6.367 -3.672 0.213 C35 W9N 30 W9N C37 C27 C 0 1 N N N N N N -20.097 20.520 13.390 -7.538 -4.534 -0.262 C37 W9N 31 W9N C38 C28 C 0 1 N N N N N N -22.755 15.547 12.143 -2.983 -1.056 -0.080 C38 W9N 32 W9N C39 C29 C 0 1 N N N N N N -21.223 15.383 12.100 -3.524 -0.183 -1.250 C39 W9N 33 W9N C40 C30 C 0 1 N N N N N N -23.086 9.612 20.207 2.513 0.643 4.212 C40 W9N 34 W9N C9 C31 C 0 1 Y N N N N N -21.534 15.222 20.102 -0.839 2.908 -1.300 C9 W9N 35 W9N N11 N5 N 0 1 N N N N N N -21.744 17.463 13.102 -5.316 -1.518 -0.397 N11 W9N 36 W9N N30 N6 N 0 1 Y N N N N N -17.309 5.898 20.999 7.805 -1.383 -1.851 N30 W9N 37 W9N N32 N7 N 0 1 Y N N N N N -17.533 8.192 21.272 6.929 -2.964 -0.630 N32 W9N 38 W9N O23 O1 O 0 1 N N N N N N -21.459 8.262 18.261 4.321 0.144 2.103 O23 W9N 39 W9N O36 O2 O 0 1 N N N N N N -22.542 19.585 13.063 -7.076 -2.251 -1.532 O36 W9N 40 W9N H1 H1 H 0 1 N N N N N N -20.238 12.148 16.266 1.042 0.685 -0.947 H1 W9N 41 W9N H2 H2 H 0 1 N N N N N N -21.852 17.411 15.574 -4.973 1.618 1.785 H2 W9N 42 W9N H3 H3 H 0 1 N N N N N N -20.465 14.891 14.528 -6.537 0.753 0.117 H3 W9N 43 W9N H4 H4 H 0 1 N N N N N N -19.725 16.455 15.010 -5.392 1.853 -0.691 H4 W9N 44 W9N H5 H5 H 0 1 N N N N N N -19.713 16.881 12.714 -5.574 -0.202 -2.074 H5 W9N 45 W9N H6 H6 H 0 1 N N N N N N -21.308 14.610 22.147 1.042 2.174 -1.990 H6 W9N 46 W9N H7 H7 H 0 1 N N N N N N -22.203 13.449 21.109 0.958 3.943 -1.804 H7 W9N 47 W9N H8 H8 H 0 1 N N N N N N -20.420 13.599 20.956 1.080 2.901 -0.366 H8 W9N 48 W9N H9 H9 H 0 1 N N N N N N -24.003 16.431 15.068 -3.913 -0.549 2.524 H9 W9N 49 W9N H10 H10 H 0 1 N N N N N N -23.227 14.942 14.428 -5.631 -0.716 2.088 H10 W9N 50 W9N H11 H11 H 0 1 N N N N N N -23.894 17.288 12.894 -4.131 -2.546 1.066 H11 W9N 51 W9N H12 H12 H 0 1 N N N N N N -22.924 12.330 19.671 0.057 1.118 3.202 H12 W9N 52 W9N H13 H13 H 0 1 N N N N N N -20.229 9.647 16.459 3.378 0.220 -0.338 H13 W9N 53 W9N H14 H14 H 0 1 N N N N N N -21.788 18.460 20.102 -3.487 4.115 -2.793 H14 W9N 54 W9N H15 H15 H 0 1 N N N N N N -20.978 5.704 18.119 5.477 1.881 0.526 H15 W9N 55 W9N H16 H16 H 0 1 N N N N N N -19.103 4.491 19.322 7.054 1.348 -1.280 H16 W9N 56 W9N H17 H17 H 0 1 N N N N N N -19.662 9.483 19.864 5.089 -2.269 1.466 H17 W9N 57 W9N H18 H18 H 0 1 N N N N N N -16.055 7.068 22.248 8.282 -3.472 -2.173 H18 W9N 58 W9N H19 H19 H 0 1 N N N N N N -15.914 4.567 21.849 9.590 -0.476 -2.474 H19 W9N 59 W9N H20 H20 H 0 1 N N N N N N -17.564 3.898 21.609 8.723 -1.382 -3.737 H20 W9N 60 W9N H21 H21 H 0 1 N N N N N N -16.476 4.136 20.199 8.109 0.199 -3.195 H21 W9N 61 W9N H22 H22 H 0 1 N N N N N N -19.588 18.549 13.266 -5.440 -4.239 0.124 H22 W9N 62 W9N H23 H23 H 0 1 N N N N N N -20.097 19.332 11.732 -6.522 -3.391 1.255 H23 W9N 63 W9N H24 H24 H 0 1 N Y N N N N -19.062 20.848 13.214 -8.465 -3.967 -0.174 H24 W9N 64 W9N H25 H25 H 0 1 N N N N N N -20.792 21.243 12.938 -7.383 -4.815 -1.304 H25 W9N 65 W9N H26 H26 H 0 1 N N N N N N -20.283 20.459 14.472 -7.602 -5.432 0.351 H26 W9N 66 W9N H27 H27 H 0 1 N N N N N N -23.143 15.814 11.149 -2.370 -0.462 0.599 H27 W9N 67 W9N H28 H28 H 0 1 N N N N N N -23.234 14.618 12.486 -2.412 -1.901 -0.464 H28 W9N 68 W9N H29 H29 H 0 1 N N N N N N -20.932 14.380 12.445 -3.214 -0.598 -2.209 H29 W9N 69 W9N H30 H30 H 0 1 N N N N N N -20.846 15.544 11.079 -3.176 0.845 -1.150 H30 W9N 70 W9N H31 H31 H 0 1 N N N N N N -22.462 9.498 21.106 2.398 -0.364 4.613 H31 W9N 71 W9N H32 H32 H 0 1 N N N N N N -23.985 10.196 20.456 3.556 0.949 4.291 H32 W9N 72 W9N H33 H33 H 0 1 N N N N N N -23.384 8.619 19.839 1.887 1.333 4.777 H33 W9N 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W9N C39 C38 SING N N 1 W9N C39 C12 SING N N 2 W9N C38 C10 SING N N 3 W9N C35 C34 SING N N 4 W9N C35 C37 SING N N 5 W9N C34 O36 DOUB N N 6 W9N C34 N11 SING N N 7 W9N C12 N11 SING N N 8 W9N C12 C13 SING N N 9 W9N N11 C10 SING N N 10 W9N C10 C15 SING N N 11 W9N C13 C14 SING N N 12 W9N C15 C14 SING N N 13 W9N C14 N5 SING N N 14 W9N N6 N5 SING Y N 15 W9N N6 C7 DOUB Y N 16 W9N N5 C4 SING Y N 17 W9N C18 C19 DOUB Y N 18 W9N C18 C17 SING Y N 19 W9N C19 C20 SING Y N 20 W9N C7 C17 SING N N 21 W9N C7 C8 SING Y N 22 W9N C4 N3 DOUB Y N 23 W9N C4 C8 SING Y N 24 W9N C17 C22 DOUB Y N 25 W9N C20 O23 SING N N 26 W9N C20 C21 DOUB Y N 27 W9N O23 C24 SING N N 28 W9N N3 C2 SING Y N 29 W9N C8 C9 DOUB Y N 30 W9N C25 C24 DOUB Y N 31 W9N C25 C26 SING Y N 32 W9N C24 C29 SING Y N 33 W9N C22 C21 SING Y N 34 W9N C21 C40 SING N N 35 W9N C26 C27 DOUB Y N 36 W9N C2 N1 DOUB Y N 37 W9N C29 C28 DOUB Y N 38 W9N C9 N1 SING Y N 39 W9N C9 C16 SING N N 40 W9N C27 C28 SING Y N 41 W9N C27 N30 SING Y N 42 W9N C28 N32 SING Y N 43 W9N N30 C33 SING N N 44 W9N N30 C31 SING Y N 45 W9N N32 C31 DOUB Y N 46 W9N C18 H1 SING N N 47 W9N C14 H2 SING N N 48 W9N C13 H3 SING N N 49 W9N C13 H4 SING N N 50 W9N C12 H5 SING N N 51 W9N C16 H6 SING N N 52 W9N C16 H7 SING N N 53 W9N C16 H8 SING N N 54 W9N C15 H9 SING N N 55 W9N C15 H10 SING N N 56 W9N C10 H11 SING N N 57 W9N C22 H12 SING N N 58 W9N C19 H13 SING N N 59 W9N C2 H14 SING N N 60 W9N C25 H15 SING N N 61 W9N C26 H16 SING N N 62 W9N C29 H17 SING N N 63 W9N C31 H18 SING N N 64 W9N C33 H19 SING N N 65 W9N C33 H20 SING N N 66 W9N C33 H21 SING N N 67 W9N C35 H22 SING N N 68 W9N C35 H23 SING N N 69 W9N C37 H24 SING N N 70 W9N C37 H25 SING N N 71 W9N C37 H26 SING N N 72 W9N C38 H27 SING N N 73 W9N C38 H28 SING N N 74 W9N C39 H29 SING N N 75 W9N C39 H30 SING N N 76 W9N C40 H31 SING N N 77 W9N C40 H32 SING N N 78 W9N C40 H33 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W9N SMILES ACDLabs 12.01 "Cn1cnc2cc(ccc12)Oc1ccc(cc1C)c1nn(c2ncnc(C)c21)C1CC2CCC(C1)N2C(=O)CC" W9N InChI InChI 1.06 "InChI=1S/C31H33N7O2/c1-5-28(39)37-21-7-8-22(37)14-23(13-21)38-31-29(19(3)32-16-33-31)30(35-38)20-6-11-27(18(2)12-20)40-24-9-10-26-25(15-24)34-17-36(26)4/h6,9-12,15-17,21-23H,5,7-8,13-14H2,1-4H3/t21-,22+,23+" W9N InChIKey InChI 1.06 HOVNOYPBTGQGSF-JKHIJQBDSA-N W9N SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N1[C@H]2CC[C@@H]1C[C@@H](C2)n3nc(c4ccc(Oc5ccc6n(C)cnc6c5)c(C)c4)c7c(C)ncnc37" W9N SMILES CACTVS 3.385 "CCC(=O)N1[CH]2CC[CH]1C[CH](C2)n3nc(c4ccc(Oc5ccc6n(C)cnc6c5)c(C)c4)c7c(C)ncnc37" W9N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1[C@@H]2CC[C@H]1CC(C2)n3c4c(c(ncn4)C)c(n3)c5ccc(c(c5)C)Oc6ccc7c(c6)ncn7C" W9N SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1C2CCC1CC(C2)n3c4c(c(ncn4)C)c(n3)c5ccc(c(c5)C)Oc6ccc7c(c6)ncn7C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier W9N "SYSTEMATIC NAME" ACDLabs 12.01 "1-{(1R,3r,5S)-3-[(3M)-4-methyl-3-{3-methyl-4-[(1-methyl-1H-benzimidazol-5-yl)oxy]phenyl}-1H-pyrazolo[3,4-d]pyrimidin-1-yl]-8-azabicyclo[3.2.1]octan-8-yl}propan-1-one" W9N "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[(1~{S},5~{R})-3-[4-methyl-3-[3-methyl-4-(1-methylbenzimidazol-5-yl)oxy-phenyl]pyrazolo[3,4-d]pyrimidin-1-yl]-8-azabicyclo[3.2.1]octan-8-yl]propan-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W9N "Create component" 2023-09-27 RCSB W9N "Initial release" 2024-06-12 RCSB #