data_W9P # _chem_comp.id W9P _chem_comp.name "(1~{S},2~{S},3~{R},4~{S},5~{S})-1-(hydroxymethyl)-5-[6-[[2-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]-4-(1,2,3,4-tetrazol-1-yl)phenyl]amino]hexylamino]cyclohexane-1,2,3,4-tetrol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H31 N7 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-04 _chem_comp.pdbx_modified_date 2021-09-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 481.503 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W9P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7K9O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W9P N1 N1 N 0 1 N N N 11.085 22.895 13.600 5.026 -0.208 -0.812 N1 W9P 1 W9P N3 N2 N 1 1 N N N 21.099 24.114 15.115 -5.879 -2.604 -0.087 N3 W9P 2 W9P C4 C1 C 0 1 N N S 8.667 22.983 13.210 6.672 -1.566 0.390 C4 W9P 3 W9P C5 C2 C 0 1 N N S 10.006 23.722 13.058 6.231 -1.032 -0.975 C5 W9P 4 W9P C6 C3 C 0 1 N N N 10.315 24.026 11.577 7.352 -0.182 -1.576 C6 W9P 5 W9P C7 C4 C 0 1 N N N 10.245 23.257 9.228 8.780 1.842 -1.244 C7 W9P 6 W9P C8 C5 C 0 1 N N N 12.362 23.613 13.581 3.815 -1.040 -0.817 C8 W9P 7 W9P C10 C6 C 0 1 N N N 14.933 23.237 13.889 1.322 -1.016 -0.652 C10 W9P 8 W9P C13 C7 C 0 1 N N N 18.314 22.846 12.454 -2.403 -0.100 -0.315 C13 W9P 9 W9P C15 C8 C 0 1 Y N N 18.689 25.920 12.860 -4.983 1.049 -0.154 C15 W9P 10 W9P C17 C9 C 0 1 Y N N 20.498 27.401 13.422 -7.356 0.841 0.115 C17 W9P 11 W9P C20 C10 C 0 1 Y N N 21.336 29.398 12.138 -8.900 2.758 0.310 C20 W9P 12 W9P C1 C11 C 0 1 N N S 10.202 22.797 10.670 7.658 0.992 -0.643 C1 W9P 13 W9P C11 C12 C 0 1 N N N 16.089 22.189 13.697 0.090 -0.125 -0.481 C11 W9P 14 W9P C12 C13 C 0 1 N N N 16.847 22.317 12.344 -1.171 -0.991 -0.487 C12 W9P 15 W9P C14 C14 C 0 1 Y N N 19.257 24.910 13.626 -4.867 -0.336 -0.178 C14 W9P 16 W9P C16 C15 C 0 1 Y N N 19.303 27.167 12.759 -6.223 1.635 -0.008 C16 W9P 17 W9P C18 C16 C 0 1 Y N N 21.077 26.395 14.189 -7.243 -0.542 0.079 C18 W9P 18 W9P C19 C17 C 0 1 Y N N 20.462 25.141 14.297 -6.001 -1.129 -0.061 C19 W9P 19 W9P C2 C18 C 0 1 N N S 8.919 21.987 10.896 8.099 0.458 0.721 C2 W9P 20 W9P C3 C19 C 0 1 N N R 8.681 21.697 12.389 6.977 -0.392 1.322 C3 W9P 21 W9P C9 C20 C 0 1 N N N 13.543 22.592 13.671 2.583 -0.149 -0.646 C9 W9P 22 W9P N2 N3 N 0 1 N N N 18.556 23.603 13.697 -3.610 -0.930 -0.321 N2 W9P 23 W9P N4 N4 N 0 1 Y N N 21.130 28.719 13.303 -8.618 1.438 0.258 N4 W9P 24 W9P N5 N5 N 0 1 Y N N 21.590 29.469 14.315 -9.861 0.790 0.377 N5 W9P 25 W9P N6 N6 N 0 1 Y N N 22.080 30.589 13.818 -10.751 1.716 0.487 N6 W9P 26 W9P N7 N7 N 0 1 Y N N 21.936 30.575 12.485 -10.196 2.873 0.448 N7 W9P 27 W9P O1 O1 O 0 1 N N N 9.060 20.751 10.241 8.385 1.554 1.592 O1 W9P 28 W9P O2 O2 O 0 1 N N N 7.484 20.975 12.571 7.389 -0.891 2.597 O2 W9P 29 W9P O3 O3 O 0 1 N N N 8.412 22.685 14.563 5.624 -2.360 0.951 O3 W9P 30 W9P O4 O4 O 0 1 N N N 9.330 24.302 9.061 9.145 2.870 -0.321 O4 W9P 31 W9P O5 O5 O 0 1 N N N 11.309 21.949 10.912 6.486 1.793 -0.485 O5 W9P 32 W9P O6 O6 O 0 1 N N N 21.894 24.492 16.207 -6.727 -3.276 -0.646 O6 W9P 33 W9P O7 O7 O -1 1 N N N 20.938 22.748 14.832 -4.930 -3.146 0.450 O7 W9P 34 W9P H1 H1 H 0 1 N N N 10.864 22.647 14.543 5.078 0.348 0.028 H1 W9P 35 W9P H3 H3 H 0 1 N N N 7.872 23.633 12.816 7.566 -2.177 0.269 H3 W9P 36 W9P H4 H4 H 0 1 N N N 9.952 24.672 13.610 6.013 -1.868 -1.639 H4 W9P 37 W9P H5 H5 H 0 1 N N N 11.340 24.418 11.508 8.247 -0.793 -1.696 H5 W9P 38 W9P H6 H6 H 0 1 N N N 9.606 24.788 11.222 7.038 0.199 -2.548 H6 W9P 39 W9P H7 H7 H 0 1 N N N 9.977 22.421 8.565 9.645 1.211 -1.447 H7 W9P 40 W9P H8 H8 H 0 1 N N N 11.258 23.609 8.982 8.434 2.295 -2.173 H8 W9P 41 W9P H9 H9 H 0 1 N N N 12.445 24.186 12.646 3.747 -1.576 -1.764 H9 W9P 42 W9P H10 H10 H 0 1 N N N 12.407 24.301 14.438 3.862 -1.756 0.003 H10 W9P 43 W9P H11 H11 H 0 1 N N N 15.066 24.053 13.164 1.370 -1.732 0.169 H11 W9P 44 W9P H12 H12 H 0 1 N N N 14.983 23.642 14.911 1.254 -1.552 -1.599 H12 W9P 45 W9P H13 H13 H 0 1 N N N 19.001 21.987 12.426 -2.335 0.436 0.631 H13 W9P 46 W9P H14 H14 H 0 1 N N N 18.516 23.505 11.596 -2.450 0.616 -1.136 H14 W9P 47 W9P H15 H15 H 0 1 N N N 17.762 25.737 12.337 -4.101 1.666 -0.245 H15 W9P 48 W9P H16 H16 H 0 1 N N N 21.077 29.071 11.142 -8.188 3.568 0.253 H16 W9P 49 W9P H17 H17 H 0 1 N N N 15.654 21.180 13.755 0.158 0.412 0.465 H17 W9P 50 W9P H18 H18 H 0 1 N N N 16.815 22.322 14.513 0.043 0.591 -1.302 H18 W9P 51 W9P H19 H19 H 0 1 N N N 16.283 23.008 11.701 -1.123 -1.707 0.334 H19 W9P 52 W9P H20 H20 H 0 1 N N N 16.878 21.322 11.875 -1.239 -1.528 -1.433 H20 W9P 53 W9P H21 H21 H 0 1 N N N 18.850 27.948 12.167 -6.313 2.711 0.011 H21 W9P 54 W9P H22 H22 H 0 1 N N N 22.007 26.582 14.705 -8.124 -1.158 0.175 H22 W9P 55 W9P H23 H23 H 0 1 N N N 8.062 22.549 10.497 8.993 -0.153 0.601 H23 W9P 56 W9P H24 H24 H 0 1 N N N 9.525 21.087 12.743 6.083 0.219 1.443 H24 W9P 57 W9P H25 H25 H 0 1 N N N 13.345 21.910 14.511 2.651 0.387 0.300 H25 W9P 58 W9P H26 H26 H 0 1 N N N 13.574 22.018 12.733 2.536 0.567 -1.467 H26 W9P 59 W9P H27 H27 H 0 1 N N N 17.663 23.773 14.114 -3.537 -1.892 -0.423 H27 W9P 60 W9P H28 H28 H 0 1 N N N 8.274 20.233 10.369 8.670 1.289 2.477 H28 W9P 61 W9P H29 H29 H 0 1 N N N 7.354 20.805 13.497 6.726 -1.440 3.037 H29 W9P 62 W9P H30 H30 H 0 1 N N N 8.404 23.489 15.069 5.835 -2.732 1.818 H30 W9P 63 W9P H31 H31 H 0 1 N N N 9.349 24.599 8.159 9.853 3.448 -0.636 H31 W9P 64 W9P H32 H32 H 0 1 N N N 11.291 21.654 11.815 6.607 2.557 0.095 H32 W9P 65 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W9P O4 C7 SING N N 1 W9P C7 C1 SING N N 2 W9P O1 C2 SING N N 3 W9P C1 C2 SING N N 4 W9P C1 O5 SING N N 5 W9P C1 C6 SING N N 6 W9P C2 C3 SING N N 7 W9P C6 C5 SING N N 8 W9P C20 N7 DOUB Y N 9 W9P C20 N4 SING Y N 10 W9P C12 C13 SING N N 11 W9P C12 C11 SING N N 12 W9P C3 O2 SING N N 13 W9P C3 C4 SING N N 14 W9P C13 N2 SING N N 15 W9P N7 N6 SING Y N 16 W9P C16 C15 DOUB Y N 17 W9P C16 C17 SING Y N 18 W9P C15 C14 SING Y N 19 W9P C5 C4 SING N N 20 W9P C5 N1 SING N N 21 W9P C4 O3 SING N N 22 W9P N4 C17 SING N N 23 W9P N4 N5 SING Y N 24 W9P C17 C18 DOUB Y N 25 W9P C8 N1 SING N N 26 W9P C8 C9 SING N N 27 W9P C14 N2 SING N N 28 W9P C14 C19 DOUB Y N 29 W9P C9 C10 SING N N 30 W9P C11 C10 SING N N 31 W9P N6 N5 DOUB Y N 32 W9P C18 C19 SING Y N 33 W9P C19 N3 SING N N 34 W9P O7 N3 SING N N 35 W9P N3 O6 DOUB N N 36 W9P N1 H1 SING N N 37 W9P C4 H3 SING N N 38 W9P C5 H4 SING N N 39 W9P C6 H5 SING N N 40 W9P C6 H6 SING N N 41 W9P C7 H7 SING N N 42 W9P C7 H8 SING N N 43 W9P C8 H9 SING N N 44 W9P C8 H10 SING N N 45 W9P C10 H11 SING N N 46 W9P C10 H12 SING N N 47 W9P C13 H13 SING N N 48 W9P C13 H14 SING N N 49 W9P C15 H15 SING N N 50 W9P C20 H16 SING N N 51 W9P C11 H17 SING N N 52 W9P C11 H18 SING N N 53 W9P C12 H19 SING N N 54 W9P C12 H20 SING N N 55 W9P C16 H21 SING N N 56 W9P C18 H22 SING N N 57 W9P C2 H23 SING N N 58 W9P C3 H24 SING N N 59 W9P C9 H25 SING N N 60 W9P C9 H26 SING N N 61 W9P N2 H27 SING N N 62 W9P O1 H28 SING N N 63 W9P O2 H29 SING N N 64 W9P O3 H30 SING N N 65 W9P O4 H31 SING N N 66 W9P O5 H32 SING N N 67 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W9P SMILES ACDLabs 12.01 "N(C1C(O)C(C(C(C1)(CO)O)O)O)CCCCCCNc2ccc(cc2[N+](=O)[O-])n3cnnn3" W9P InChI InChI 1.03 "InChI=1S/C20H31N7O7/c28-11-20(32)10-15(17(29)18(30)19(20)31)22-8-4-2-1-3-7-21-14-6-5-13(9-16(14)27(33)34)26-12-23-24-25-26/h5-6,9,12,15,17-19,21-22,28-32H,1-4,7-8,10-11H2/t15-,17-,18+,19-,20-/m0/s1" W9P InChIKey InChI 1.03 AEVYKERIFGNKMO-UVBQOVKKSA-N W9P SMILES_CANONICAL CACTVS 3.385 "OC[C@@]1(O)C[C@H](NCCCCCCNc2ccc(cc2[N+]([O-])=O)n3cnnn3)[C@H](O)[C@@H](O)[C@@H]1O" W9P SMILES CACTVS 3.385 "OC[C]1(O)C[CH](NCCCCCCNc2ccc(cc2[N+]([O-])=O)n3cnnn3)[CH](O)[CH](O)[CH]1O" W9P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1n2cnnn2)[N+](=O)[O-])NCCCCCCN[C@H]3C[C@@]([C@H]([C@@H]([C@H]3O)O)O)(CO)O" W9P SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1n2cnnn2)[N+](=O)[O-])NCCCCCCNC3CC(C(C(C3O)O)O)(CO)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier W9P "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S,3R,4S,5S)-1-(hydroxymethyl)-5-[(6-{[2-nitro-4-(1H-tetrazol-1-yl)phenyl]amino}hexyl)amino]cyclohexane-1,2,3,4-tetrol" W9P "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S},2~{S},3~{R},4~{S},5~{S})-1-(hydroxymethyl)-5-[6-[[2-nitro-4-(1,2,3,4-tetrazol-1-yl)phenyl]amino]hexylamino]cyclohexane-1,2,3,4-tetrol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W9P "Create component" 2020-10-04 RCSB W9P "Initial release" 2021-09-29 RCSB ##