data_W9V # _chem_comp.id W9V _chem_comp.name "(1S,2S,3R,4S,5S)-1-(hydroxymethyl)-5-{[(5Z)-6-{[2-nitro-4-(2H-1,2,3-triazol-2-yl)phenyl]amino}hex-5-en-1-yl]amino}cyclohexane-1,2,3,4-tetrol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H32 N6 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-04 _chem_comp.pdbx_modified_date 2022-08-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 480.515 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W9V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7K9T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W9V N1 N1 N 0 1 N N N 25.652 1.400 13.344 4.995 -0.206 -0.814 N1 W9V 1 W9V N3 N2 N 1 1 N N N 33.945 -2.880 16.359 -5.912 -2.588 -0.088 N3 W9V 2 W9V C4 C1 C 0 1 N N N 26.377 2.688 11.423 7.321 -0.179 -1.580 C4 W9V 3 W9V C5 C2 C 0 1 N N S 25.879 2.762 12.865 6.199 -1.030 -0.983 C5 W9V 4 W9V C6 C3 C 0 1 N N N 26.801 0.535 13.048 3.783 -1.036 -0.823 C6 W9V 5 W9V C7 C4 C 0 1 N N N 26.686 -0.826 13.758 2.553 -0.144 -0.645 C7 W9V 6 W9V C8 C5 C 0 1 N N N 27.419 -1.995 13.069 1.290 -1.008 -0.654 C8 W9V 7 W9V C10 C6 C 0 1 N N N 29.364 -3.636 13.119 -1.202 -0.980 -0.485 C10 W9V 8 W9V C13 C7 C 0 1 Y N N 34.152 -3.240 14.965 -6.032 -1.113 -0.053 C13 W9V 9 W9V C15 C8 C 0 1 Y N N 35.834 -3.824 13.337 -7.385 0.859 0.120 C15 W9V 10 W9V C17 C9 C 0 1 Y N N 39.265 -4.718 13.414 -10.142 2.939 0.444 C17 W9V 11 W9V C20 C10 C 0 1 N N S 24.629 3.647 13.042 6.640 -1.573 0.378 C20 W9V 12 W9V C21 C11 C 0 1 N N R 23.428 3.147 12.226 6.949 -0.405 1.317 C21 W9V 13 W9V C1 C12 C 0 1 N N S 23.772 3.125 10.744 8.071 0.446 0.719 C1 W9V 14 W9V C11 C13 C 0 1 N N N 30.870 -3.937 13.288 -2.433 -0.088 -0.307 C11 W9V 15 W9V C12 C14 C 0 1 Y N N 33.151 -3.357 13.986 -4.897 -0.321 -0.168 C12 W9V 16 W9V C14 C15 C 0 1 Y N N 35.474 -3.472 14.622 -7.273 -0.524 0.088 C14 W9V 17 W9V C16 C16 C 0 1 Y N N 39.185 -4.068 12.133 -10.736 1.675 0.489 C16 W9V 18 W9V C18 C17 C 0 1 Y N N 34.855 -3.953 12.363 -6.250 1.651 0.010 C18 W9V 19 W9V C19 C18 C 0 1 Y N N 33.526 -3.719 12.698 -5.010 1.064 -0.136 C19 W9V 20 W9V C2 C19 C 0 1 N N S 25.256 2.938 10.387 7.630 0.989 -0.641 C2 W9V 21 W9V C3 C20 C 0 1 N N N 25.609 2.711 8.913 8.752 1.841 -1.239 C3 W9V 22 W9V C9 C21 C 0 1 N N N 28.698 -2.436 13.814 0.060 -0.116 -0.476 C9 W9V 23 W9V N2 N3 N 0 1 N N N 31.709 -3.157 14.205 -3.641 -0.916 -0.316 N2 W9V 24 W9V N4 N4 N 0 1 Y N N 37.245 -4.053 13.076 -8.646 1.457 0.263 N4 W9V 25 W9V N5 N5 N 0 1 Y N N 37.910 -3.682 11.997 -9.753 0.811 0.372 N5 W9V 26 W9V N6 N6 N 0 1 Y N N 38.037 -4.668 13.936 -8.853 2.726 0.304 N6 W9V 27 W9V O1 O1 O 0 1 N N N 22.857 2.424 9.946 8.360 1.537 1.596 O1 W9V 28 W9V O2 O2 O 0 1 N N N 26.036 3.991 8.535 9.120 2.862 -0.310 O2 W9V 29 W9V O3 O3 O 0 1 N N N 24.970 1.566 10.499 6.459 1.791 -0.477 O3 W9V 30 W9V O4 O4 O 0 1 N N N 33.569 -1.573 16.709 -6.761 -3.255 -0.653 O4 W9V 31 W9V O5 O5 O -1 1 N N N 34.172 -3.839 17.365 -4.965 -3.135 0.448 O5 W9V 32 W9V O6 O6 O 0 1 N N N 24.314 3.821 14.405 5.592 -2.369 0.936 O6 W9V 33 W9V O7 O7 O 0 1 N N N 22.323 3.994 12.377 7.361 -0.913 2.588 O7 W9V 34 W9V H1 H1 H 0 1 N N N 25.506 1.422 14.333 5.050 0.346 0.029 H1 W9V 35 W9V H3 H3 H 0 1 N N N 26.800 1.688 11.248 8.214 -0.791 -1.706 H3 W9V 36 W9V H4 H4 H 0 1 N N N 27.161 3.447 11.283 7.006 0.208 -2.550 H4 W9V 37 W9V H5 H5 H 0 1 N N N 26.683 3.209 13.468 5.978 -1.862 -1.652 H5 W9V 38 W9V H6 H6 H 0 1 N N N 26.851 0.368 11.962 3.713 -1.566 -1.772 H6 W9V 39 W9V H7 H7 H 0 1 N N N 27.721 1.036 13.384 3.830 -1.756 -0.006 H7 W9V 40 W9V H8 H8 H 0 1 N N N 27.099 -0.716 14.771 2.623 0.387 0.305 H8 W9V 41 W9V H9 H9 H 0 1 N N N 25.619 -1.086 13.823 2.505 0.577 -1.461 H9 W9V 42 W9V H10 H10 H 0 1 N N N 26.733 -2.853 13.014 1.220 -1.539 -1.603 H10 W9V 43 W9V H11 H11 H 0 1 N N N 27.697 -1.682 12.052 1.337 -1.729 0.163 H11 W9V 44 W9V H12 H12 H 0 1 N N N 29.194 -3.503 12.040 -1.155 -1.701 0.331 H12 W9V 45 W9V H13 H13 H 0 1 N N N 40.143 -5.158 13.864 -10.641 3.895 0.508 H13 W9V 46 W9V H14 H14 H 0 1 N N N 24.891 4.633 12.630 7.533 -2.185 0.253 H14 W9V 47 W9V H15 H15 H 0 1 N N N 23.181 2.125 12.550 6.056 0.206 1.442 H15 W9V 48 W9V H16 H16 H 0 1 N N N 23.601 4.172 10.455 8.964 -0.166 0.594 H16 W9V 49 W9V H17 H17 H 0 1 N N N 30.942 -4.984 13.616 -2.362 0.442 0.642 H17 W9V 50 W9V H18 H18 H 0 1 N N N 36.240 -3.375 15.377 -8.156 -1.140 0.172 H18 W9V 51 W9V H19 H19 H 0 1 N N N 39.988 -3.921 11.426 -11.788 1.454 0.599 H19 W9V 52 W9V H20 H20 H 0 1 N N N 35.122 -4.232 11.355 -6.338 2.727 0.035 H20 W9V 53 W9V H21 H21 H 0 1 N N N 32.766 -3.821 11.938 -4.127 1.680 -0.221 H21 W9V 54 W9V H22 H22 H 0 1 N N N 24.731 2.391 8.333 9.616 1.209 -1.447 H22 W9V 55 W9V H23 H23 H 0 1 N N N 26.413 1.968 8.801 8.406 2.299 -2.165 H23 W9V 56 W9V H24 H24 H 0 1 N N N 29.408 -1.596 13.836 0.130 0.415 0.473 H24 W9V 57 W9V H25 H25 H 0 1 N N N 28.433 -2.720 14.843 0.013 0.605 -1.293 H25 W9V 58 W9V H26 H26 H 0 1 N N N 31.500 -2.187 14.079 -3.570 -1.877 -0.424 H26 W9V 59 W9V H27 H27 H 0 1 N N N 21.973 2.604 10.244 8.646 1.266 2.479 H27 W9V 60 W9V H28 H28 H 0 1 N N N 26.289 3.983 7.619 9.828 3.442 -0.623 H28 W9V 61 W9V H29 H29 H 0 1 N N N 24.695 1.371 11.387 6.582 2.552 0.107 H29 W9V 62 W9V H30 H30 H 0 1 N N N 25.082 4.130 14.871 5.803 -2.746 1.801 H30 W9V 63 W9V H31 H31 H 0 1 N N N 22.077 4.034 13.294 6.698 -1.463 3.026 H31 W9V 64 W9V H2 H2 H 0 1 N N N 28.828 -4.532 13.467 -1.273 -1.511 -1.434 H2 W9V 65 W9V H32 H32 H 0 1 N N N 31.321 -3.833 12.290 -2.480 0.632 -1.124 H32 W9V 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W9V O2 C3 SING N N 1 W9V C3 C2 SING N N 2 W9V O1 C1 SING N N 3 W9V C2 O3 SING N N 4 W9V C2 C1 SING N N 5 W9V C2 C4 SING N N 6 W9V C1 C21 SING N N 7 W9V C4 C5 SING N N 8 W9V N5 C16 DOUB Y N 9 W9V N5 N4 SING Y N 10 W9V C16 C17 SING Y N 11 W9V C21 O7 SING N N 12 W9V C21 C20 SING N N 13 W9V C18 C19 DOUB Y N 14 W9V C18 C15 SING Y N 15 W9V C19 C12 SING Y N 16 W9V C5 C20 SING N N 17 W9V C5 N1 SING N N 18 W9V C20 O6 SING N N 19 W9V C6 N1 SING N N 20 W9V C6 C7 SING N N 21 W9V C8 C7 SING N N 22 W9V C8 C9 SING N N 23 W9V N4 C15 SING N N 24 W9V N4 N6 SING Y N 25 W9V C10 C11 SING N N 26 W9V C10 C9 SING N N 27 W9V C11 N2 SING N N 28 W9V C15 C14 DOUB Y N 29 W9V C17 N6 DOUB Y N 30 W9V C12 N2 SING N N 31 W9V C12 C13 DOUB Y N 32 W9V C14 C13 SING Y N 33 W9V C13 N3 SING N N 34 W9V N3 O4 DOUB N N 35 W9V N3 O5 SING N N 36 W9V N1 H1 SING N N 37 W9V C4 H3 SING N N 38 W9V C4 H4 SING N N 39 W9V C5 H5 SING N N 40 W9V C6 H6 SING N N 41 W9V C6 H7 SING N N 42 W9V C7 H8 SING N N 43 W9V C7 H9 SING N N 44 W9V C8 H10 SING N N 45 W9V C8 H11 SING N N 46 W9V C10 H12 SING N N 47 W9V C17 H13 SING N N 48 W9V C20 H14 SING N N 49 W9V C21 H15 SING N N 50 W9V C1 H16 SING N N 51 W9V C11 H17 SING N N 52 W9V C14 H18 SING N N 53 W9V C16 H19 SING N N 54 W9V C18 H20 SING N N 55 W9V C19 H21 SING N N 56 W9V C3 H22 SING N N 57 W9V C3 H23 SING N N 58 W9V C9 H24 SING N N 59 W9V C9 H25 SING N N 60 W9V N2 H26 SING N N 61 W9V O1 H27 SING N N 62 W9V O2 H28 SING N N 63 W9V O3 H29 SING N N 64 W9V O6 H30 SING N N 65 W9V O7 H31 SING N N 66 W9V C10 H2 SING N N 67 W9V C11 H32 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W9V SMILES ACDLabs 12.01 "N(C1CC(C(C(C1O)O)O)(O)CO)CCCCCCNc2c([N+](=O)[O-])cc(cc2)n3nccn3" W9V InChI InChI 1.03 "InChI=1S/C21H32N6O7/c28-13-21(32)12-16(18(29)19(30)20(21)31)23-8-4-2-1-3-7-22-15-6-5-14(11-17(15)27(33)34)26-24-9-10-25-26/h5-6,9-11,16,18-20,22-23,28-32H,1-4,7-8,12-13H2/t16-,18-,19+,20-,21-/m0/s1" W9V InChIKey InChI 1.03 BJRWBFFORRYEBK-RQUKQETFSA-N W9V SMILES_CANONICAL CACTVS 3.385 "OC[C@@]1(O)C[C@H](NCCCCCCNc2ccc(cc2[N+]([O-])=O)n3nccn3)[C@H](O)[C@@H](O)[C@@H]1O" W9V SMILES CACTVS 3.385 "OC[C]1(O)C[CH](NCCCCCCNc2ccc(cc2[N+]([O-])=O)n3nccn3)[CH](O)[CH](O)[CH]1O" W9V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1n2nccn2)[N+](=O)[O-])NCCCCCCN[C@H]3C[C@@]([C@H]([C@@H]([C@H]3O)O)O)(CO)O" W9V SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1n2nccn2)[N+](=O)[O-])NCCCCCCNC3CC(C(C(C3O)O)O)(CO)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier W9V "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S,3R,4S,5S)-1-(hydroxymethyl)-5-[(6-{[2-nitro-4-(2H-1,2,3-triazol-2-yl)phenyl]amino}hexyl)amino]cyclohexane-1,2,3,4-tetrol" W9V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S},2~{S},3~{R},4~{S},5~{S})-1-(hydroxymethyl)-5-[6-[[2-nitro-4-(1,2,3-triazol-2-yl)phenyl]amino]hexylamino]cyclohexane-1,2,3,4-tetrol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W9V "Create component" 2020-10-04 RCSB W9V "Other modification" 2020-10-27 RCSB W9V "Initial release" 2021-09-29 RCSB W9V "Other modification" 2022-08-05 RCSB #