data_W9Y # _chem_comp.id W9Y _chem_comp.name "(1S,2S,3R,4S,5S)-1-(hydroxymethyl)-5-[(6-{[2-nitro-4-(1H-1,2,3-triazol-1-yl)phenyl]amino}hexyl)amino]cyclohexane-1,2,3,4-tetrol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H32 N6 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-04 _chem_comp.pdbx_modified_date 2021-10-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 480.515 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W9Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KAD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W9Y N1 N1 N 0 1 N N N -14.069 21.076 13.996 5.000 -0.207 -0.813 N1 W9Y 1 W9Y N3 N2 N 1 1 N N N -10.973 30.282 16.382 -5.906 -2.594 -0.088 N3 W9Y 2 W9Y C4 C1 C 0 1 N N S -15.507 19.246 13.949 6.645 -1.569 0.384 C4 W9Y 3 W9Y C5 C2 C 0 1 N N S -15.420 20.733 13.725 6.205 -1.031 -0.978 C5 W9Y 4 W9Y C6 C3 C 0 1 N N N -15.635 21.002 12.265 7.326 -0.180 -1.577 C6 W9Y 5 W9Y C7 C4 C 0 1 N N N -15.076 20.619 9.946 8.756 1.841 -1.241 C7 W9Y 6 W9Y C8 C5 C 0 1 N N N -13.950 22.283 14.728 3.789 -1.038 -0.820 C8 W9Y 7 W9Y C10 C6 C 0 1 N N N -12.051 23.894 14.832 1.296 -1.011 -0.652 C10 W9Y 8 W9Y C13 C7 C 0 1 N N N -11.785 27.459 13.562 -2.428 -0.093 -0.311 C13 W9Y 9 W9Y C15 C8 C 0 1 Y N N -13.060 30.091 13.303 -5.007 1.058 -0.145 C15 W9Y 10 W9Y C17 C9 C 0 1 Y N N -13.746 32.038 14.501 -7.382 0.852 0.114 C17 W9Y 11 W9Y C20 C10 C 0 1 Y N N -16.100 34.760 14.103 -10.233 2.912 0.452 C20 W9Y 12 W9Y C21 C11 C 0 1 Y N N -15.423 33.596 13.620 -8.894 2.786 0.303 C21 W9Y 13 W9Y C1 C12 C 0 1 N N S -14.643 20.321 11.352 7.634 0.990 -0.642 C1 W9Y 14 W9Y C11 C13 C 0 1 N N N -11.447 25.020 14.034 0.065 -0.120 -0.478 C11 W9Y 15 W9Y C12 C14 C 0 1 N N N -11.814 26.369 14.616 -1.197 -0.985 -0.486 C12 W9Y 16 W9Y C14 C15 C 0 1 Y N N -12.130 29.820 14.273 -4.892 -0.327 -0.173 C14 W9Y 17 W9Y C16 C16 C 0 1 Y N N -13.871 31.198 13.417 -6.247 1.645 -0.002 C16 W9Y 18 W9Y C18 C17 C 0 1 Y N N -12.798 31.759 15.478 -7.268 -0.531 0.085 C18 W9Y 19 W9Y C19 C18 C 0 1 Y N N -11.975 30.637 15.375 -6.027 -1.119 -0.058 C19 W9Y 20 W9Y C2 C19 C 0 1 N N S -14.520 18.841 11.649 8.075 0.452 0.721 C2 W9Y 21 W9Y C3 C20 C 0 1 N N R -14.470 18.526 13.119 6.953 -0.399 1.320 C3 W9Y 22 W9Y C9 C21 C 0 1 N N N -12.993 23.133 13.951 2.557 -0.146 -0.645 C9 W9Y 23 W9Y N2 N3 N 0 1 N N N -11.288 28.667 14.146 -3.636 -0.922 -0.318 N2 W9Y 24 W9Y N4 N4 N 0 1 Y N N -14.611 33.193 14.576 -8.643 1.450 0.260 N4 W9Y 25 W9Y N5 N5 N 0 1 Y N N -14.731 34.016 15.576 -9.765 0.828 0.377 N5 W9Y 26 W9Y N6 N6 N 0 1 Y N N -15.613 34.956 15.319 -10.730 1.670 0.493 N6 W9Y 27 W9Y O1 O1 O 0 1 N N N -16.407 20.356 9.827 9.123 2.866 -0.315 O1 W9Y 28 W9Y O2 O2 O 0 1 N N N -13.427 20.915 11.516 6.462 1.792 -0.481 O2 W9Y 29 W9Y O3 O3 O 0 1 N N N -13.386 18.320 11.122 8.362 1.545 1.595 O3 W9Y 30 W9Y O4 O4 O 0 1 N N N -14.627 17.180 13.296 7.365 -0.902 2.593 O4 W9Y 31 W9Y O5 O5 O 0 1 N N N -15.287 19.011 15.283 5.598 -2.364 0.944 O5 W9Y 32 W9Y O6 O6 O 0 1 N N N -9.688 29.939 15.968 -4.957 -3.139 0.447 O6 W9Y 33 W9Y O7 O7 O -1 1 N N N -11.268 30.252 17.748 -6.756 -3.264 -0.648 O7 W9Y 34 W9Y H1 H1 H 0 1 N N N -13.651 20.338 14.525 5.054 0.347 0.029 H1 W9Y 35 W9Y H3 H3 H 0 1 N N N -16.507 18.898 13.650 7.539 -2.181 0.262 H3 W9Y 36 W9Y H4 H4 H 0 1 N N N -16.139 21.282 14.352 5.985 -1.865 -1.645 H4 W9Y 37 W9Y H5 H5 H 0 1 N N N -15.564 22.087 12.101 8.220 -0.792 -1.700 H5 W9Y 38 W9Y H6 H6 H 0 1 N N N -16.644 20.656 11.996 7.012 0.203 -2.548 H6 W9Y 39 W9Y H7 H7 H 0 1 N N N -14.511 19.988 9.244 9.620 1.210 -1.446 H7 W9Y 40 W9Y H8 H8 H 0 1 N N N -14.888 21.679 9.719 8.410 2.297 -2.169 H8 W9Y 41 W9Y H9 H9 H 0 1 N N N -13.556 22.084 15.735 3.719 -1.571 -1.768 H9 W9Y 42 W9Y H10 H10 H 0 1 N N N -14.927 22.781 14.809 3.836 -1.756 -0.001 H10 W9Y 43 W9Y H11 H11 H 0 1 N N N -12.599 24.303 15.694 1.343 -1.730 0.166 H11 W9Y 44 W9Y H12 H12 H 0 1 N N N -11.255 23.224 15.188 1.227 -1.545 -1.600 H12 W9Y 45 W9Y H13 H13 H 0 1 N N N -12.802 27.627 13.179 -2.359 0.440 0.637 H13 W9Y 46 W9Y H14 H14 H 0 1 N N N -11.128 27.153 12.735 -2.475 0.625 -1.130 H14 W9Y 47 W9Y H15 H15 H 0 1 N N N -13.157 29.436 12.449 -4.124 1.674 -0.231 H15 W9Y 48 W9Y H16 H16 H 0 1 N N N -16.845 35.350 13.589 -10.792 3.833 0.529 H16 W9Y 49 W9Y H17 H17 H 0 1 N N N -15.553 33.134 12.653 -8.170 3.586 0.232 H17 W9Y 50 W9Y H18 H18 H 0 1 N N N -11.817 24.964 13.000 0.134 0.414 0.470 H18 W9Y 51 W9Y H19 H19 H 0 1 N N N -10.352 24.914 14.038 0.018 0.599 -1.297 H19 W9Y 52 W9Y H20 H20 H 0 1 N N N -11.097 26.622 15.411 -1.150 -1.703 0.333 H20 W9Y 53 W9Y H21 H21 H 0 1 N N N -12.827 26.311 15.041 -1.266 -1.519 -1.433 H21 W9Y 54 W9Y H22 H22 H 0 1 N N N -14.607 31.408 12.655 -6.336 2.721 0.019 H22 W9Y 55 W9Y H23 H23 H 0 1 N N N -12.697 32.419 16.327 -8.151 -1.147 0.176 H23 W9Y 56 W9Y H24 H24 H 0 1 N N N -15.400 18.337 11.223 8.969 -0.160 0.598 H24 W9Y 57 W9Y H25 H25 H 0 1 N N N -13.480 18.830 13.490 6.059 0.213 1.443 H25 W9Y 58 W9Y H26 H26 H 0 1 N N N -12.406 22.483 13.285 2.627 0.388 0.303 H26 W9Y 59 W9Y H27 H27 H 0 1 N N N -13.569 23.851 13.348 2.510 0.572 -1.464 H27 W9Y 60 W9Y H28 H28 H 0 1 N N N -10.983 28.433 15.069 -3.564 -1.883 -0.423 H28 W9Y 61 W9Y H29 H29 H 0 1 N N N -16.689 20.542 8.939 9.831 3.445 -0.630 H29 W9Y 62 W9Y H30 H30 H 0 1 N N N -13.111 20.752 12.397 6.584 2.555 0.101 H30 W9Y 63 W9Y H31 H31 H 0 1 N N N -13.339 17.393 11.325 8.648 1.278 2.479 H31 W9Y 64 W9Y H32 H32 H 0 1 N N N -14.596 16.976 14.223 6.701 -1.451 3.032 H32 W9Y 65 W9Y H33 H33 H 0 1 N N N -15.943 19.467 15.798 5.808 -2.739 1.811 H33 W9Y 66 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W9Y O1 C7 SING N N 1 W9Y C7 C1 SING N N 2 W9Y O3 C2 SING N N 3 W9Y C1 O2 SING N N 4 W9Y C1 C2 SING N N 5 W9Y C1 C6 SING N N 6 W9Y C2 C3 SING N N 7 W9Y C6 C5 SING N N 8 W9Y C3 O4 SING N N 9 W9Y C3 C4 SING N N 10 W9Y C15 C16 DOUB Y N 11 W9Y C15 C14 SING Y N 12 W9Y C16 C17 SING Y N 13 W9Y C13 N2 SING N N 14 W9Y C13 C12 SING N N 15 W9Y C21 C20 DOUB Y N 16 W9Y C21 N4 SING Y N 17 W9Y C5 C4 SING N N 18 W9Y C5 N1 SING N N 19 W9Y C4 O5 SING N N 20 W9Y C9 C8 SING N N 21 W9Y C9 C10 SING N N 22 W9Y N1 C8 SING N N 23 W9Y C11 C12 SING N N 24 W9Y C11 C10 SING N N 25 W9Y C20 N6 SING Y N 26 W9Y N2 C14 SING N N 27 W9Y C14 C19 DOUB Y N 28 W9Y C17 N4 SING N N 29 W9Y C17 C18 DOUB Y N 30 W9Y N4 N5 SING Y N 31 W9Y N6 N5 DOUB Y N 32 W9Y C19 C18 SING Y N 33 W9Y C19 N3 SING N N 34 W9Y O6 N3 DOUB N N 35 W9Y N3 O7 SING N N 36 W9Y N1 H1 SING N N 37 W9Y C4 H3 SING N N 38 W9Y C5 H4 SING N N 39 W9Y C6 H5 SING N N 40 W9Y C6 H6 SING N N 41 W9Y C7 H7 SING N N 42 W9Y C7 H8 SING N N 43 W9Y C8 H9 SING N N 44 W9Y C8 H10 SING N N 45 W9Y C10 H11 SING N N 46 W9Y C10 H12 SING N N 47 W9Y C13 H13 SING N N 48 W9Y C13 H14 SING N N 49 W9Y C15 H15 SING N N 50 W9Y C20 H16 SING N N 51 W9Y C21 H17 SING N N 52 W9Y C11 H18 SING N N 53 W9Y C11 H19 SING N N 54 W9Y C12 H20 SING N N 55 W9Y C12 H21 SING N N 56 W9Y C16 H22 SING N N 57 W9Y C18 H23 SING N N 58 W9Y C2 H24 SING N N 59 W9Y C3 H25 SING N N 60 W9Y C9 H26 SING N N 61 W9Y C9 H27 SING N N 62 W9Y N2 H28 SING N N 63 W9Y O1 H29 SING N N 64 W9Y O2 H30 SING N N 65 W9Y O3 H31 SING N N 66 W9Y O4 H32 SING N N 67 W9Y O5 H33 SING N N 68 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W9Y SMILES ACDLabs 12.01 "N(CCCCCCNc2ccc(n1ccnn1)cc2[N+]([O-])=O)C3C(O)C(C(C(C3)(CO)O)O)O" W9Y InChI InChI 1.03 "InChI=1S/C21H32N6O7/c28-13-21(32)12-16(18(29)19(30)20(21)31)23-8-4-2-1-3-7-22-15-6-5-14(11-17(15)27(33)34)26-10-9-24-25-26/h5-6,9-11,16,18-20,22-23,28-32H,1-4,7-8,12-13H2/t16-,18-,19+,20-,21-/m0/s1" W9Y InChIKey InChI 1.03 XQDBSGWKEMRNGZ-RQUKQETFSA-N W9Y SMILES_CANONICAL CACTVS 3.385 "OC[C@@]1(O)C[C@H](NCCCCCCNc2ccc(cc2[N+]([O-])=O)n3ccnn3)[C@H](O)[C@@H](O)[C@@H]1O" W9Y SMILES CACTVS 3.385 "OC[C]1(O)C[CH](NCCCCCCNc2ccc(cc2[N+]([O-])=O)n3ccnn3)[CH](O)[CH](O)[CH]1O" W9Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1n2ccnn2)[N+](=O)[O-])NCCCCCCN[C@H]3C[C@@]([C@H]([C@@H]([C@H]3O)O)O)(CO)O" W9Y SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1n2ccnn2)[N+](=O)[O-])NCCCCCCNC3CC(C(C(C3O)O)O)(CO)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier W9Y "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S,3R,4S,5S)-1-(hydroxymethyl)-5-[(6-{[2-nitro-4-(1H-1,2,3-triazol-1-yl)phenyl]amino}hexyl)amino]cyclohexane-1,2,3,4-tetrol" W9Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S},2~{S},3~{R},4~{S},5~{S})-1-(hydroxymethyl)-5-[6-[[2-nitro-4-(1,2,3-triazol-1-yl)phenyl]amino]hexylamino]cyclohexane-1,2,3,4-tetrol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W9Y "Create component" 2020-10-04 RCSB W9Y "Initial release" 2021-10-06 RCSB ##