data_WAV # _chem_comp.id WAV _chem_comp.name "(1S,2S,3R,4S,5S)-1-(hydroxymethyl)-5-{[2-(2-{[2-nitro-4-(triazan-1-yl)phenyl]amino}ethoxy)ethyl]amino}cyclohexane-1,2,3,4-tetrol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H30 N6 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-05 _chem_comp.pdbx_modified_date 2021-10-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 446.456 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WAV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KBJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WAV N1 N1 N 0 1 N N N -14.087 20.932 14.099 -2.801 -0.836 0.117 N1 WAV 1 WAV N3 N2 N 1 1 N N N -13.332 28.955 14.102 4.192 -2.273 1.073 N3 WAV 2 WAV C4 C1 C 0 1 N N R -14.405 18.338 13.066 -5.634 -0.257 -0.085 C4 WAV 3 WAV C5 C2 C 0 1 N N S -15.523 19.021 13.854 -5.044 -1.063 1.074 C5 WAV 4 WAV C6 C3 C 0 1 N N S -15.429 20.549 13.642 -3.604 -0.613 1.327 C6 WAV 5 WAV C7 C4 C 0 1 N N N -14.891 20.356 9.739 -4.165 3.170 0.877 C7 WAV 6 WAV C8 C5 C 0 1 N N N -13.979 22.309 14.461 -2.295 -2.214 0.068 C8 WAV 7 WAV C10 C6 C 0 1 N N N -11.184 24.674 13.628 0.546 -1.685 -2.289 C10 WAV 8 WAV C13 C7 C 0 1 Y N N -11.563 28.166 10.755 4.065 0.646 -1.293 C13 WAV 9 WAV C15 C8 C 0 1 Y N N -13.340 29.873 10.426 6.040 0.833 0.055 C15 WAV 10 WAV C17 C9 C 0 1 Y N N -12.917 28.935 12.624 4.550 -1.020 0.372 C17 WAV 11 WAV C1 C10 C 0 1 N N N -15.555 20.894 12.148 -3.590 0.876 1.681 C1 WAV 12 WAV C11 C11 C 0 1 N N N -11.863 26.111 13.733 1.753 -0.760 -2.117 C11 WAV 13 WAV C12 C12 C 0 1 Y N N -11.881 28.111 12.124 3.730 -0.530 -0.636 C12 WAV 14 WAV C14 C13 C 0 1 Y N N -12.273 29.031 9.901 5.217 1.326 -0.949 C14 WAV 15 WAV C16 C14 C 0 1 Y N N -13.634 29.820 11.736 5.704 -0.344 0.713 C16 WAV 16 WAV C2 C15 C 0 1 N N S -14.587 20.127 11.272 -4.179 1.681 0.522 C2 WAV 17 WAV C3 C16 C 0 1 N N S -14.553 18.594 11.571 -5.620 1.231 0.269 C3 WAV 18 WAV C9 C17 C 0 1 N N N -12.813 22.910 13.625 -1.465 -2.407 -1.203 C9 WAV 19 WAV N2 N3 N 0 1 N N N -11.131 27.197 13.012 2.565 -1.222 -0.989 N2 WAV 20 WAV N4 N4 N 0 1 N N N -14.098 30.761 9.559 7.210 1.519 0.401 N4 WAV 21 WAV N5 N5 N 0 1 N N N -15.386 31.066 9.830 7.482 2.733 -0.162 N5 WAV 22 WAV N6 N6 N 0 1 N N N -16.282 30.736 8.790 7.715 3.741 0.860 N6 WAV 23 WAV O1 O1 O 0 1 N N N -16.256 20.161 9.519 -4.821 3.911 -0.154 O1 WAV 24 WAV O2 O2 O 0 1 N N N -13.333 20.604 11.517 -3.398 1.464 -0.655 O2 WAV 25 WAV O3 O3 O 0 1 N N N -13.405 18.086 10.916 -6.170 1.984 -0.814 O3 WAV 26 WAV O4 O4 O 0 1 N N N -14.373 16.937 13.317 -6.979 -0.678 -0.322 O4 WAV 27 WAV O5 O5 O 0 1 N N N -15.434 18.725 15.217 -5.057 -2.453 0.743 O5 WAV 28 WAV O6 O6 O 0 1 N N N -12.004 23.790 14.427 -0.302 -1.579 -1.144 O6 WAV 29 WAV O7 O7 O 0 1 N N N -12.693 28.126 15.066 5.063 -3.064 1.389 O7 WAV 30 WAV O8 O8 O -1 1 N N N -14.368 29.834 14.522 3.027 -2.514 1.334 O8 WAV 31 WAV H1 H1 H 0 1 N N N -13.854 20.376 14.897 -3.329 -0.615 -0.713 H1 WAV 32 WAV H3 H3 H 0 1 N N N -13.451 18.781 13.388 -5.038 -0.423 -0.983 H3 WAV 33 WAV H4 H4 H 0 1 N N N -16.489 18.678 13.454 -5.640 -0.898 1.971 H4 WAV 34 WAV H5 H5 H 0 1 N N N -16.211 21.063 14.220 -3.184 -1.187 2.153 H5 WAV 35 WAV H6 H6 H 0 1 N N N -14.313 19.640 9.136 -4.686 3.323 1.822 H6 WAV 36 WAV H7 H7 H 0 1 N N N -14.613 21.382 9.456 -3.135 3.511 0.970 H7 WAV 37 WAV H8 H8 H 0 1 N N N -13.760 22.401 15.535 -1.670 -2.403 0.942 H8 WAV 38 WAV H9 H9 H 0 1 N N N -14.918 22.834 14.232 -3.134 -2.909 0.064 H9 WAV 39 WAV H10 H10 H 0 1 N N N -11.164 24.336 12.582 -0.010 -1.395 -3.181 H10 WAV 40 WAV H11 H11 H 0 1 N N N -10.158 24.706 14.023 0.889 -2.714 -2.393 H11 WAV 41 WAV H12 H12 H 0 1 N N N -10.774 27.544 10.359 3.428 1.027 -2.078 H12 WAV 42 WAV H13 H13 H 0 1 N N N -15.364 21.970 12.021 -4.185 1.041 2.579 H13 WAV 43 WAV H14 H14 H 0 1 N N N -16.580 20.663 11.822 -2.564 1.196 1.862 H14 WAV 44 WAV H15 H15 H 0 1 N N N -11.924 26.385 14.797 2.353 -0.773 -3.027 H15 WAV 45 WAV H16 H16 H 0 1 N N N -12.877 26.043 13.313 1.407 0.256 -1.924 H16 WAV 46 WAV H17 H17 H 0 1 N N N -12.025 29.071 8.851 5.478 2.240 -1.460 H17 WAV 47 WAV H18 H18 H 0 1 N N N -14.418 30.449 12.131 6.344 -0.727 1.494 H18 WAV 48 WAV H19 H19 H 0 1 N N N -15.475 18.125 11.197 -6.215 1.396 1.166 H19 WAV 49 WAV H20 H20 H 0 1 N N N -13.231 23.476 12.780 -1.164 -3.452 -1.285 H20 WAV 50 WAV H21 H21 H 0 1 N N N -12.185 22.092 13.243 -2.063 -2.133 -2.072 H21 WAV 51 WAV H22 H22 H 0 1 N N N -10.432 26.754 12.451 2.296 -2.007 -0.487 H22 WAV 52 WAV H23 H23 H 0 1 N N N -14.090 30.346 8.649 7.828 1.132 1.040 H23 WAV 53 WAV H24 H24 H 0 1 N N N -15.448 32.050 9.999 6.741 3.016 -0.786 H24 WAV 54 WAV H25 H25 H 0 1 N N N -17.212 30.988 9.058 7.916 4.638 0.444 H25 WAV 55 WAV H26 H26 H 0 1 N N N -16.028 31.234 7.961 6.932 3.803 1.492 H26 WAV 56 WAV H27 H27 H 0 1 N N N -16.451 20.296 8.599 -4.850 4.865 0.004 H27 WAV 57 WAV H28 H28 H 0 1 N N N -13.120 20.480 12.435 -3.715 1.946 -1.431 H28 WAV 58 WAV H29 H29 H 0 1 N N N -13.340 17.151 11.069 -7.084 1.750 -1.030 H29 WAV 59 WAV H30 H30 H 0 1 N N N -14.281 16.784 14.250 -7.063 -1.613 -0.553 H30 WAV 60 WAV H31 H31 H 0 1 N N N -16.138 19.160 15.683 -5.940 -2.808 0.569 H31 WAV 61 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WAV N6 N5 SING N N 1 WAV O1 C7 SING N N 2 WAV N4 N5 SING N N 3 WAV N4 C15 SING N N 4 WAV C7 C2 SING N N 5 WAV C14 C15 DOUB Y N 6 WAV C14 C13 SING Y N 7 WAV C15 C16 SING Y N 8 WAV C13 C12 DOUB Y N 9 WAV O3 C3 SING N N 10 WAV C2 O2 SING N N 11 WAV C2 C3 SING N N 12 WAV C2 C1 SING N N 13 WAV C3 C4 SING N N 14 WAV C16 C17 DOUB Y N 15 WAV C12 C17 SING Y N 16 WAV C12 N2 SING N N 17 WAV C1 C6 SING N N 18 WAV C17 N3 SING N N 19 WAV N2 C11 SING N N 20 WAV C4 O4 SING N N 21 WAV C4 C5 SING N N 22 WAV C9 O6 SING N N 23 WAV C9 C8 SING N N 24 WAV C10 C11 SING N N 25 WAV C10 O6 SING N N 26 WAV C6 C5 SING N N 27 WAV C6 N1 SING N N 28 WAV C5 O5 SING N N 29 WAV N1 C8 SING N N 30 WAV N3 O8 SING N N 31 WAV N3 O7 DOUB N N 32 WAV N1 H1 SING N N 33 WAV C4 H3 SING N N 34 WAV C5 H4 SING N N 35 WAV C6 H5 SING N N 36 WAV C7 H6 SING N N 37 WAV C7 H7 SING N N 38 WAV C8 H8 SING N N 39 WAV C8 H9 SING N N 40 WAV C10 H10 SING N N 41 WAV C10 H11 SING N N 42 WAV C13 H12 SING N N 43 WAV C1 H13 SING N N 44 WAV C1 H14 SING N N 45 WAV C11 H15 SING N N 46 WAV C11 H16 SING N N 47 WAV C14 H17 SING N N 48 WAV C16 H18 SING N N 49 WAV C3 H19 SING N N 50 WAV C9 H20 SING N N 51 WAV C9 H21 SING N N 52 WAV N2 H22 SING N N 53 WAV N4 H23 SING N N 54 WAV N5 H24 SING N N 55 WAV N6 H25 SING N N 56 WAV N6 H26 SING N N 57 WAV O1 H27 SING N N 58 WAV O2 H28 SING N N 59 WAV O3 H29 SING N N 60 WAV O4 H30 SING N N 61 WAV O5 H31 SING N N 62 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WAV SMILES ACDLabs 12.01 "N(CCOCCNc1ccc(cc1[N+]([O-])=O)NNN)C2C(C(O)C(C(CO)(C2)O)O)O" WAV InChI InChI 1.03 "InChI=1S/C17H30N6O8/c18-22-21-10-1-2-11(13(7-10)23(29)30)19-3-5-31-6-4-20-12-8-17(28,9-24)16(27)15(26)14(12)25/h1-2,7,12,14-16,19-22,24-28H,3-6,8-9,18H2/t12-,14-,15+,16-,17-/m0/s1" WAV InChIKey InChI 1.03 DYANQIPKBSETSL-RKOFLFEYSA-N WAV SMILES_CANONICAL CACTVS 3.385 "NNNc1ccc(NCCOCCN[C@H]2C[C@](O)(CO)[C@@H](O)[C@H](O)[C@H]2O)c(c1)[N+]([O-])=O" WAV SMILES CACTVS 3.385 "NNNc1ccc(NCCOCCN[CH]2C[C](O)(CO)[CH](O)[CH](O)[CH]2O)c(c1)[N+]([O-])=O" WAV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1NNN)[N+](=O)[O-])NCCOCCN[C@H]2C[C@@]([C@H]([C@@H]([C@H]2O)O)O)(CO)O" WAV SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1NNN)[N+](=O)[O-])NCCOCCNC2CC(C(C(C2O)O)O)(CO)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WAV "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S,3R,4S,5S)-1-(hydroxymethyl)-5-{[2-(2-{[2-nitro-4-(triazan-1-yl)phenyl]amino}ethoxy)ethyl]amino}cyclohexane-1,2,3,4-tetrol" WAV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S},2~{S},3~{R},4~{S},5~{S})-5-[2-[2-[[4-(2-azanylhydrazinyl)-2-nitro-phenyl]amino]ethoxy]ethylamino]-1-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WAV "Create component" 2020-10-05 RCSB WAV "Initial release" 2021-10-06 RCSB ##