data_WB0
#
_chem_comp.id WB0
_chem_comp.name "2-cyano-D-phenylalanyl-2,4-dichloro-N-[(2S)-1-(4-fluorophenyl)-4-(methylamino)-4-oxobutan-2-yl]-D-phenylalaninamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C30 H30 Cl2 F N5 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-09-29
_chem_comp.pdbx_modified_date 2024-12-20
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 598.495
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code WB0
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8UDF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WB0 O3 O1 O 0 1 N N N N N N -7.899 7.378 66.045 -5.570 3.102 0.594 O3 WB0 1
WB0 C27 C1 C 0 1 Y N N N N N -8.945 11.016 63.584 6.762 4.089 -1.380 C27 WB0 2
WB0 O2 O2 O 0 1 N N N N N N -8.854 10.953 68.437 -1.363 1.620 -0.146 O2 WB0 3
WB0 C25 C2 C 0 1 Y N N N N N -10.982 12.275 63.627 4.443 3.462 -1.334 C25 WB0 4
WB0 C26 C3 C 0 1 Y N N N N N -10.271 11.160 63.199 5.513 4.100 -1.966 C26 WB0 5
WB0 C24 C4 C 0 1 Y N N N N N -10.396 13.243 64.436 4.644 2.827 -0.107 C24 WB0 6
WB0 C23 C5 C 0 1 N N N N N N -11.214 14.437 64.861 3.496 2.136 0.583 C23 WB0 7
WB0 C22 C6 C 0 1 N N R N N N -10.979 14.797 66.306 3.354 0.714 0.036 C22 WB0 8
WB0 C20 C7 C 0 1 Y N N N N N -11.510 14.620 70.896 0.517 -3.492 1.460 C20 WB0 9
WB0 C21 C8 C 0 1 N N N N N N -11.390 13.625 67.166 2.132 0.066 0.636 C21 WB0 10
WB0 C17 C9 C 0 1 Y N N N N N -13.857 13.489 72.003 2.912 -3.303 0.088 C17 WB0 11
WB0 C16 C10 C 0 1 Y N N N N N -12.843 12.682 71.508 1.857 -2.472 -0.244 C16 WB0 12
WB0 C15 C11 C 0 1 Y N N N N N -11.682 13.239 70.961 0.659 -2.567 0.444 C15 WB0 13
WB0 C14 C12 C 0 1 N N N N N N -10.595 12.353 70.421 -0.490 -1.661 0.083 C14 WB0 14
WB0 C8 C13 C 0 1 Y N N N N N -9.200 7.033 72.014 -4.728 -2.815 -1.305 C8 WB0 15
WB0 C7 C14 C 0 1 Y N N N N N -9.325 6.957 70.633 -4.667 -1.946 -0.232 C7 WB0 16
WB0 C6 C15 C 0 1 Y N N N N N -10.492 7.396 70.015 -5.205 -0.677 -0.338 C6 WB0 17
WB0 C13 C16 C 0 1 N N R N N N -10.897 12.048 68.976 -0.277 -0.287 0.721 C13 WB0 18
WB0 C18 C17 C 0 1 Y N N N N N -13.733 14.864 71.956 2.769 -4.228 1.106 C18 WB0 19
WB0 C12 C18 C 0 1 N N N N N N -10.082 10.858 68.549 -1.483 0.579 0.464 C12 WB0 20
WB0 C11 C19 C 0 1 Y N N N N N -11.545 7.913 70.767 -5.804 -0.276 -1.518 C11 WB0 21
WB0 C9 C20 C 0 1 Y N N N N N -10.336 7.591 72.813 -5.327 -2.414 -2.487 C9 WB0 22
WB0 C10 C21 C 0 1 Y N N N N N -11.478 8.017 72.153 -5.865 -1.143 -2.592 C10 WB0 23
WB0 C1 C22 C 0 1 N N N N N N -8.841 5.022 65.050 -6.252 5.074 2.301 C1 WB0 24
WB0 C19 C23 C 0 1 Y N N N N N -12.496 15.473 71.372 1.571 -4.323 1.792 C19 WB0 25
WB0 C5 C24 C 0 1 N N N N N N -10.617 7.313 68.520 -5.139 0.269 0.833 C5 WB0 26
WB0 C4 C25 C 0 1 N N S N N N -9.968 8.513 67.893 -3.848 1.087 0.755 C4 WB0 27
WB0 C3 C26 C 0 1 N N N N N N -10.011 8.387 66.393 -3.839 2.132 1.872 C3 WB0 28
WB0 O1 O3 O 0 1 N N N N N N -12.460 13.051 66.957 2.249 -0.705 1.564 O1 WB0 29
WB0 C2 C27 C 0 1 N N N N N N -9.124 7.259 65.957 -4.929 3.143 1.623 C2 WB0 30
WB0 C28 C28 C 0 1 Y N N N N N -8.346 11.983 64.391 6.956 3.449 -0.169 C28 WB0 31
WB0 C29 C29 C 0 1 Y N N N N N -9.068 13.095 64.813 5.900 2.820 0.465 C29 WB0 32
WB0 C30 C30 C 0 1 N N N N N N -12.408 12.457 63.239 3.143 3.474 -1.934 C30 WB0 33
WB0 CL1 CL1 CL 0 0 N N N N N N -15.015 15.844 72.575 4.092 -5.272 1.522 CL1 WB0 34
WB0 CL2 CL2 CL 0 0 N N N N N N -13.081 10.967 71.582 2.035 -1.310 -1.521 CL2 WB0 35
WB0 F1 F1 F 0 1 N N N N N N -10.250 7.679 74.156 -5.381 -3.260 -3.539 F1 WB0 36
WB0 N1 N1 N 0 1 N N N N N N -9.674 6.141 65.480 -5.192 4.092 2.543 N1 WB0 37
WB0 N2 N2 N 0 1 N N N N N N -10.704 9.707 68.298 -2.695 0.196 0.911 N2 WB0 38
WB0 N3 N3 N 0 1 N N N N N N -10.565 13.194 68.127 0.910 0.343 0.139 N3 WB0 39
WB0 N4 N4 N 0 1 N N N N N N -11.629 16.085 66.626 4.546 -0.068 0.390 N4 WB0 40
WB0 N5 N5 N 0 1 N N N N N N -13.510 12.604 62.954 2.111 3.483 -2.409 N5 WB0 41
WB0 H1 H1 H 0 1 N N N N N N -8.378 10.156 63.259 7.591 4.578 -1.871 H1 WB0 42
WB0 H2 H2 H 0 1 N N N N N N -10.744 10.416 62.575 5.363 4.600 -2.911 H2 WB0 43
WB0 H3 H3 H 0 1 N N N N N N -10.941 15.297 64.232 3.688 2.096 1.655 H3 WB0 44
WB0 H4 H4 H 0 1 N N N N N N -12.280 14.205 64.722 2.575 2.690 0.398 H4 WB0 45
WB0 H5 H5 H 0 1 N N N N N N -9.895 14.931 66.436 3.251 0.750 -1.048 H5 WB0 46
WB0 H6 H6 H 0 1 N N N N N N -10.604 15.029 70.473 -0.416 -3.563 1.999 H6 WB0 47
WB0 H7 H7 H 0 1 N N N N N N -14.745 13.042 72.426 3.846 -3.229 -0.449 H7 WB0 48
WB0 H8 H8 H 0 1 N N N N N N -10.559 11.417 70.998 -0.542 -1.554 -1.001 H8 WB0 49
WB0 H9 H9 H 0 1 N N N N N N -9.626 12.868 70.496 -1.421 -2.092 0.451 H9 WB0 50
WB0 H10 H10 H 0 1 N N N N N N -8.298 6.695 72.503 -4.304 -3.805 -1.223 H10 WB0 51
WB0 H11 H11 H 0 1 N N N N N N -8.517 6.557 70.039 -4.200 -2.259 0.690 H11 WB0 52
WB0 H12 H12 H 0 1 N N N N N N -11.966 11.809 68.874 -0.136 -0.404 1.796 H12 WB0 53
WB0 H13 H13 H 0 1 N N N N N N -12.439 8.243 70.259 -6.224 0.716 -1.599 H13 WB0 54
WB0 H14 H14 H 0 1 N N N N N N -12.308 8.426 72.709 -6.333 -0.829 -3.513 H14 WB0 55
WB0 H15 H15 H 0 1 N N N N N N -9.482 4.203 64.692 -6.317 5.755 3.150 H15 WB0 56
WB0 H16 H16 H 0 1 N N N N N N -8.178 5.350 64.236 -6.023 5.640 1.398 H16 WB0 57
WB0 H17 H17 H 0 1 N N N N N N -8.235 4.670 65.897 -7.203 4.558 2.176 H17 WB0 58
WB0 H18 H18 H 0 1 N N N N N N -12.375 16.545 71.323 1.460 -5.045 2.587 H18 WB0 59
WB0 H19 H19 H 0 1 N N N N N N -11.681 7.285 68.243 -5.997 0.940 0.806 H19 WB0 60
WB0 H20 H20 H 0 1 N N N N N N -10.121 6.399 68.161 -5.152 -0.301 1.762 H20 WB0 61
WB0 H21 H21 H 0 1 N N N N N N -8.922 8.582 68.226 -3.793 1.587 -0.211 H21 WB0 62
WB0 H22 H22 H 0 1 N N N N N N -9.661 9.325 65.937 -4.011 1.642 2.830 H22 WB0 63
WB0 H23 H23 H 0 1 N N N N N N -11.044 8.186 66.072 -2.873 2.637 1.890 H23 WB0 64
WB0 H24 H24 H 0 1 N N N N N N -7.315 11.868 64.690 7.937 3.440 0.283 H24 WB0 65
WB0 H25 H25 H 0 1 N N N N N N -8.596 13.842 65.433 6.056 2.329 1.414 H25 WB0 66
WB0 H26 H26 H 0 1 N N N N N N -10.669 6.069 65.416 -4.680 4.124 3.366 H26 WB0 67
WB0 H27 H27 H 0 1 N N N N N N -11.699 9.660 68.389 -2.805 -0.669 1.336 H27 WB0 68
WB0 H28 H28 H 0 1 N N N N N N -9.696 13.668 68.270 0.817 0.960 -0.604 H28 WB0 69
WB0 H29 H29 H 0 1 N N N N N N -11.466 16.312 67.586 4.663 -0.116 1.391 H29 WB0 70
WB0 H30 H30 H 0 1 N N N N N N -11.248 16.804 66.044 4.506 -0.991 -0.015 H30 WB0 71
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WB0 N5 C30 TRIP N N 1
WB0 C26 C27 DOUB Y N 2
WB0 C26 C25 SING Y N 3
WB0 C30 C25 SING N N 4
WB0 C27 C28 SING Y N 5
WB0 C25 C24 DOUB Y N 6
WB0 C28 C29 DOUB Y N 7
WB0 C24 C29 SING Y N 8
WB0 C24 C23 SING N N 9
WB0 C23 C22 SING N N 10
WB0 C1 N1 SING N N 11
WB0 N1 C2 SING N N 12
WB0 C2 O3 DOUB N N 13
WB0 C2 C3 SING N N 14
WB0 C22 N4 SING N N 15
WB0 C22 C21 SING N N 16
WB0 C3 C4 SING N N 17
WB0 O1 C21 DOUB N N 18
WB0 C21 N3 SING N N 19
WB0 C4 N2 SING N N 20
WB0 C4 C5 SING N N 21
WB0 N3 C13 SING N N 22
WB0 N2 C12 SING N N 23
WB0 O2 C12 DOUB N N 24
WB0 C5 C6 SING N N 25
WB0 C12 C13 SING N N 26
WB0 C13 C14 SING N N 27
WB0 C6 C7 DOUB Y N 28
WB0 C6 C11 SING Y N 29
WB0 C14 C15 SING N N 30
WB0 C7 C8 SING Y N 31
WB0 C11 C10 DOUB Y N 32
WB0 C20 C15 DOUB Y N 33
WB0 C20 C19 SING Y N 34
WB0 C15 C16 SING Y N 35
WB0 C19 C18 DOUB Y N 36
WB0 C16 CL2 SING N N 37
WB0 C16 C17 DOUB Y N 38
WB0 C18 C17 SING Y N 39
WB0 C18 CL1 SING N N 40
WB0 C8 C9 DOUB Y N 41
WB0 C10 C9 SING Y N 42
WB0 C9 F1 SING N N 43
WB0 C27 H1 SING N N 44
WB0 C26 H2 SING N N 45
WB0 C23 H3 SING N N 46
WB0 C23 H4 SING N N 47
WB0 C22 H5 SING N N 48
WB0 C20 H6 SING N N 49
WB0 C17 H7 SING N N 50
WB0 C14 H8 SING N N 51
WB0 C14 H9 SING N N 52
WB0 C8 H10 SING N N 53
WB0 C7 H11 SING N N 54
WB0 C13 H12 SING N N 55
WB0 C11 H13 SING N N 56
WB0 C10 H14 SING N N 57
WB0 C1 H15 SING N N 58
WB0 C1 H16 SING N N 59
WB0 C1 H17 SING N N 60
WB0 C19 H18 SING N N 61
WB0 C5 H19 SING N N 62
WB0 C5 H20 SING N N 63
WB0 C4 H21 SING N N 64
WB0 C3 H22 SING N N 65
WB0 C3 H23 SING N N 66
WB0 C28 H24 SING N N 67
WB0 C29 H25 SING N N 68
WB0 N1 H26 SING N N 69
WB0 N2 H27 SING N N 70
WB0 N3 H28 SING N N 71
WB0 N4 H29 SING N N 72
WB0 N4 H30 SING N N 73
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WB0 SMILES ACDLabs 12.01 "Clc1cc(Cl)ccc1CC(NC(=O)C(N)Cc1ccccc1C#N)C(=O)NC(Cc1ccc(F)cc1)CC(=O)NC"
WB0 InChI InChI 1.06 "InChI=1S/C30H30Cl2FN5O3/c1-36-28(39)16-24(12-18-6-10-23(33)11-7-18)37-30(41)27(14-20-8-9-22(31)15-25(20)32)38-29(40)26(35)13-19-4-2-3-5-21(19)17-34/h2-11,15,24,26-27H,12-14,16,35H2,1H3,(H,36,39)(H,37,41)(H,38,40)/t24-,26+,27+/m0/s1"
WB0 InChIKey InChI 1.06 PTBCEVVQPWJWDW-WYMJOSIYSA-N
WB0 SMILES_CANONICAL CACTVS 3.385 "CNC(=O)C[C@H](Cc1ccc(F)cc1)NC(=O)[C@@H](Cc2ccc(Cl)cc2Cl)NC(=O)[C@H](N)Cc3ccccc3C#N"
WB0 SMILES CACTVS 3.385 "CNC(=O)C[CH](Cc1ccc(F)cc1)NC(=O)[CH](Cc2ccc(Cl)cc2Cl)NC(=O)[CH](N)Cc3ccccc3C#N"
WB0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)C[C@H](Cc1ccc(cc1)F)NC(=O)[C@@H](Cc2ccc(cc2Cl)Cl)NC(=O)[C@@H](Cc3ccccc3C#N)N"
WB0 SMILES "OpenEye OEToolkits" 2.0.7 "CNC(=O)CC(Cc1ccc(cc1)F)NC(=O)C(Cc2ccc(cc2Cl)Cl)NC(=O)C(Cc3ccccc3C#N)N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WB0 "SYSTEMATIC NAME" ACDLabs 12.01 "2-cyano-D-phenylalanyl-2,4-dichloro-N-[(2S)-1-(4-fluorophenyl)-4-(methylamino)-4-oxobutan-2-yl]-D-phenylalaninamide"
WB0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-[[(2~{R})-2-[[(2~{R})-2-azanyl-3-(2-cyanophenyl)propanoyl]amino]-3-(2,4-dichlorophenyl)propanoyl]amino]-4-(4-fluorophenyl)-~{N}-methyl-butanamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WB0 "Create component" 2023-09-29 RCSB
WB0 "Initial release" 2024-12-25 RCSB
#