data_WB3 # _chem_comp.id WB3 _chem_comp.name "(2E)-3-[4-({2-[(1-{[4-(methanesulfonyl)phenyl]methyl}piperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-4-yl}oxy)-3,5-dimethylphenyl]prop-2-enenitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H32 N6 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-27 _chem_comp.pdbx_modified_date 2025-05-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 568.689 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WB3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8D0N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WB3 N N1 N 0 1 N N N N N N 49.501 -30.890 34.667 -2.287 1.546 1.056 N WB3 1 WB3 C C1 C 0 1 Y N N N N N 50.582 -35.556 36.652 -6.859 -0.102 0.056 C WB3 2 WB3 O O1 O 0 1 N N N N N N 52.653 -36.837 37.565 -9.360 0.028 0.353 O WB3 3 WB3 C1 C2 C 0 1 Y N N N N N 49.444 -35.006 37.216 -6.700 0.831 1.064 C1 WB3 4 WB3 C10 C3 C 0 1 N N N N N N 50.636 -29.464 33.033 -1.363 2.240 -1.104 C10 WB3 5 WB3 C11 C4 C 0 1 N N N N N N 51.062 -28.708 34.279 -0.082 2.703 -0.405 C11 WB3 6 WB3 C12 C5 C 0 1 Y N N N N N 52.454 -26.626 34.624 2.238 1.876 -0.293 C12 WB3 7 WB3 C13 C6 C 0 1 Y N N N N N 52.200 -25.343 36.460 4.398 1.054 -0.190 C13 WB3 8 WB3 C14 C7 C 0 1 Y N N N N N 50.712 -25.878 38.276 4.741 -1.243 -0.234 C14 WB3 9 WB3 C15 C8 C 0 1 Y N N N N N 51.085 -27.071 38.895 4.547 -1.849 -1.469 C15 WB3 10 WB3 C16 C9 C 0 1 N N N N N N 52.505 -27.575 38.879 4.905 -1.112 -2.734 C16 WB3 11 WB3 C17 C10 C 0 1 Y N N N N N 50.087 -27.789 39.548 4.028 -3.123 -1.540 C17 WB3 12 WB3 C18 C11 C 0 1 Y N N N N N 48.765 -27.341 39.589 3.695 -3.806 -0.365 C18 WB3 13 WB3 C19 C12 C 0 1 N N N N N N 47.735 -28.065 40.340 3.141 -5.167 -0.435 C19 WB3 14 WB3 C2 C13 C 0 1 Y N N N N N 48.889 -33.871 36.654 -5.454 1.031 1.630 C2 WB3 15 WB3 C20 C14 C 0 1 N N N N N N 47.753 -29.159 41.086 2.822 -5.824 0.700 C20 WB3 16 WB3 C21 C15 C 0 1 N N N N N N 46.655 -29.757 41.774 2.282 -7.149 0.632 C21 WB3 17 WB3 C22 C16 C 0 1 Y N N N N N 48.444 -26.151 38.936 3.893 -3.192 0.877 C22 WB3 18 WB3 C23 C17 C 0 1 Y N N N N N 49.405 -25.399 38.270 4.413 -1.918 0.936 C23 WB3 19 WB3 C24 C18 C 0 1 N N N N N N 49.034 -24.110 37.586 4.626 -1.255 2.272 C24 WB3 20 WB3 C25 C19 C 0 1 Y N N N N N 53.172 -24.414 35.987 4.872 2.386 -0.126 C25 WB3 21 WB3 C26 C20 C 0 1 Y N N N N N 53.536 -23.184 36.575 6.237 2.688 -0.039 C26 WB3 22 WB3 C27 C21 C 0 1 Y N N N N N 54.400 -22.357 35.932 6.602 4.006 0.018 C27 WB3 23 WB3 C28 C22 C 0 1 Y N N N N N 54.908 -22.746 34.703 5.627 4.997 -0.011 C28 WB3 24 WB3 C29 C23 C 0 1 Y N N N N N 53.734 -24.723 34.725 3.929 3.443 -0.163 C29 WB3 25 WB3 C3 C24 C 0 1 Y N N N N N 51.174 -34.966 35.547 -5.775 -0.839 -0.382 C3 WB3 26 WB3 C30 C25 C 0 1 N N N N N N 50.442 -37.243 38.858 -8.507 0.816 -2.049 C30 WB3 27 WB3 C4 C26 C 0 1 Y N N N N N 50.603 -33.833 34.997 -4.531 -0.643 0.187 C4 WB3 28 WB3 C5 C27 C 0 1 Y N N N N N 49.447 -33.278 35.531 -4.368 0.298 1.187 C5 WB3 29 WB3 C6 C28 C 0 1 N N N N N N 48.732 -32.130 34.853 -3.012 0.512 1.807 C6 WB3 30 WB3 C7 C29 C 0 1 N N N N N N 50.437 -30.632 35.773 -1.065 1.951 1.763 C7 WB3 31 WB3 C8 C30 C 0 1 N N N N N N 51.554 -29.673 35.348 -0.415 3.125 1.028 C8 WB3 32 WB3 C9 C31 C 0 1 N N N N N N 50.220 -30.880 33.392 -1.986 1.091 -0.308 C9 WB3 33 WB3 N1 N2 N 0 1 N N N N N N 52.084 -27.726 33.938 0.886 1.604 -0.379 N1 WB3 34 WB3 N2 N3 N 0 1 Y N N N N N 51.838 -26.413 35.808 3.092 0.856 -0.272 N2 WB3 35 WB3 N3 N4 N 0 1 N N N N N N 45.758 -30.213 42.317 1.854 -8.200 0.578 N3 WB3 36 WB3 N4 N5 N 0 1 Y N N N N N 54.606 -23.882 34.096 4.348 4.707 -0.093 N4 WB3 37 WB3 N5 N6 N 0 1 Y N N N N N 53.386 -25.845 34.037 2.627 3.136 -0.241 N5 WB3 38 WB3 O1 O2 O 0 1 N N N N N N 51.694 -25.085 37.698 5.258 0.011 -0.169 O1 WB3 39 WB3 O2 O3 O 0 1 N N N N N N 50.877 -38.133 36.462 -8.404 -1.692 -1.145 O2 WB3 40 WB3 S S1 S 0 1 N N N N N N 51.256 -37.047 37.318 -8.447 -0.356 -0.665 S WB3 41 WB3 H2 H2 H 0 1 N N N N N N 48.994 -35.459 38.087 -7.548 1.403 1.410 H2 WB3 42 WB3 H3 H3 H 0 1 N N N N N N 51.478 -29.501 32.326 -2.069 3.069 -1.158 H3 WB3 43 WB3 H4 H4 H 0 1 N N N N N N 49.787 -28.944 32.565 -1.125 1.898 -2.111 H4 WB3 44 WB3 H5 H5 H 0 1 N N N N N N 50.182 -28.181 34.676 0.342 3.550 -0.946 H5 WB3 45 WB3 H6 H6 H 0 1 N N N N N N 53.045 -27.178 39.751 5.941 -1.324 -2.997 H6 WB3 46 WB3 H7 H7 H 0 1 N N N N N N 52.504 -28.674 38.917 4.251 -1.438 -3.542 H7 WB3 47 WB3 H8 H8 H 0 1 N N N N N N 53.002 -27.241 37.956 4.782 -0.040 -2.577 H8 WB3 48 WB3 H9 H9 H 0 1 N N N N N N 50.342 -28.718 40.036 3.876 -3.593 -2.500 H9 WB3 49 WB3 H10 H10 H 0 1 N N N N N N 46.757 -27.611 40.270 2.990 -5.640 -1.394 H10 WB3 50 WB3 H11 H11 H 0 1 N N N N N N 48.005 -33.438 37.098 -5.329 1.759 2.417 H11 WB3 51 WB3 H12 H12 H 0 1 N N N N N N 48.707 -29.655 41.185 2.973 -5.351 1.659 H12 WB3 52 WB3 H13 H13 H 0 1 N N N N N N 47.421 -25.804 38.948 3.638 -3.715 1.786 H13 WB3 53 WB3 H14 H14 H 0 1 N N N N N N 48.751 -24.316 36.543 3.727 -0.705 2.553 H14 WB3 54 WB3 H15 H15 H 0 1 N N N N N N 48.186 -23.647 38.111 4.838 -2.014 3.025 H15 WB3 55 WB3 H16 H16 H 0 1 N N N N N N 49.894 -23.425 37.604 5.468 -0.565 2.205 H16 WB3 56 WB3 H17 H17 H 0 1 N N N N N N 53.128 -22.901 37.534 6.979 1.904 -0.017 H17 WB3 57 WB3 H18 H18 H 0 1 N N N N N N 54.686 -21.413 36.371 7.646 4.276 0.086 H18 WB3 58 WB3 H19 H19 H 0 1 N N N N N N 55.596 -22.077 34.208 5.929 6.033 0.035 H19 WB3 59 WB3 H20 H20 H 0 1 N N N N N N 52.072 -35.387 35.120 -5.900 -1.567 -1.169 H20 WB3 60 WB3 H21 H21 H 0 1 N N N N N N 50.721 -36.417 39.529 -7.702 0.593 -2.749 H21 WB3 61 WB3 H22 H22 H 0 1 N N N N N N 49.353 -37.235 38.701 -9.467 0.726 -2.559 H22 WB3 62 WB3 H23 H23 H 0 1 N N N N N N 50.740 -38.200 39.311 -8.390 1.831 -1.671 H23 WB3 63 WB3 H24 H24 H 0 1 N N N N N N 51.064 -33.371 34.137 -3.682 -1.215 -0.159 H24 WB3 64 WB3 H25 H25 H 0 1 N N N N N N 47.846 -31.885 35.458 -2.448 -0.421 1.779 H25 WB3 65 WB3 H26 H26 H 0 1 N N N N N N 48.413 -32.477 33.859 -3.132 0.832 2.842 H26 WB3 66 WB3 H27 H27 H 0 1 N N N N N N 49.884 -30.187 36.613 -1.317 2.253 2.779 H27 WB3 67 WB3 H28 H28 H 0 1 N N N N N N 50.885 -31.585 36.092 -0.369 1.113 1.794 H28 WB3 68 WB3 H29 H29 H 0 1 N N N N N N 52.396 -30.256 34.947 0.500 3.416 1.544 H29 WB3 69 WB3 H30 H30 H 0 1 N N N N N N 51.889 -29.099 36.225 -1.106 3.969 1.008 H30 WB3 70 WB3 H31 H31 H 0 1 N N N N N N 49.565 -31.277 32.603 -1.286 0.257 -0.266 H31 WB3 71 WB3 H32 H32 H 0 1 N N N N N N 51.117 -31.511 33.476 -2.906 0.768 -0.794 H32 WB3 72 WB3 H33 H33 H 0 1 N N N N N N 52.925 -28.260 33.848 0.578 0.685 -0.423 H33 WB3 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WB3 C10 C9 SING N N 1 WB3 C10 C11 SING N N 2 WB3 C9 N SING N N 3 WB3 N1 C11 SING N N 4 WB3 N1 C12 SING N N 5 WB3 N5 C12 DOUB Y N 6 WB3 N5 C29 SING Y N 7 WB3 N4 C28 DOUB Y N 8 WB3 N4 C29 SING Y N 9 WB3 C11 C8 SING N N 10 WB3 C12 N2 SING Y N 11 WB3 N C6 SING N N 12 WB3 N C7 SING N N 13 WB3 C28 C27 SING Y N 14 WB3 C29 C25 DOUB Y N 15 WB3 C6 C5 SING N N 16 WB3 C4 C5 DOUB Y N 17 WB3 C4 C3 SING Y N 18 WB3 C8 C7 SING N N 19 WB3 C5 C2 SING Y N 20 WB3 C3 C DOUB Y N 21 WB3 N2 C13 DOUB Y N 22 WB3 C27 C26 DOUB Y N 23 WB3 C25 C13 SING Y N 24 WB3 C25 C26 SING Y N 25 WB3 C13 O1 SING N N 26 WB3 O2 S DOUB N N 27 WB3 C C1 SING Y N 28 WB3 C S SING N N 29 WB3 C2 C1 DOUB Y N 30 WB3 S O DOUB N N 31 WB3 S C30 SING N N 32 WB3 C24 C23 SING N N 33 WB3 O1 C14 SING N N 34 WB3 C23 C14 DOUB Y N 35 WB3 C23 C22 SING Y N 36 WB3 C14 C15 SING Y N 37 WB3 C16 C15 SING N N 38 WB3 C15 C17 DOUB Y N 39 WB3 C22 C18 DOUB Y N 40 WB3 C17 C18 SING Y N 41 WB3 C18 C19 SING N N 42 WB3 C19 C20 DOUB N E 43 WB3 C20 C21 SING N N 44 WB3 C21 N3 TRIP N N 45 WB3 C1 H2 SING N N 46 WB3 C10 H3 SING N N 47 WB3 C10 H4 SING N N 48 WB3 C11 H5 SING N N 49 WB3 C16 H6 SING N N 50 WB3 C16 H7 SING N N 51 WB3 C16 H8 SING N N 52 WB3 C17 H9 SING N N 53 WB3 C19 H10 SING N N 54 WB3 C2 H11 SING N N 55 WB3 C20 H12 SING N N 56 WB3 C22 H13 SING N N 57 WB3 C24 H14 SING N N 58 WB3 C24 H15 SING N N 59 WB3 C24 H16 SING N N 60 WB3 C26 H17 SING N N 61 WB3 C27 H18 SING N N 62 WB3 C28 H19 SING N N 63 WB3 C3 H20 SING N N 64 WB3 C30 H21 SING N N 65 WB3 C30 H22 SING N N 66 WB3 C30 H23 SING N N 67 WB3 C4 H24 SING N N 68 WB3 C6 H25 SING N N 69 WB3 C6 H26 SING N N 70 WB3 C7 H27 SING N N 71 WB3 C7 H28 SING N N 72 WB3 C8 H29 SING N N 73 WB3 C8 H30 SING N N 74 WB3 C9 H31 SING N N 75 WB3 C9 H32 SING N N 76 WB3 N1 H33 SING N N 77 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WB3 SMILES ACDLabs 12.01 "Cc1cc(\C=C\C#N)cc(C)c1Oc1nc(nc2ncccc21)NC1CCN(Cc2ccc(cc2)S(C)(=O)=O)CC1" WB3 InChI InChI 1.03 "InChI=1S/C31H32N6O3S/c1-21-18-24(6-4-14-32)19-22(2)28(21)40-30-27-7-5-15-33-29(27)35-31(36-30)34-25-12-16-37(17-13-25)20-23-8-10-26(11-9-23)41(3,38)39/h4-11,15,18-19,25H,12-13,16-17,20H2,1-3H3,(H,33,34,35,36)/b6-4+" WB3 InChIKey InChI 1.03 GIPFCGYDMDLDIO-GQCTYLIASA-N WB3 SMILES_CANONICAL CACTVS 3.385 "Cc1cc(\C=C\C#N)cc(C)c1Oc2nc(NC3CCN(CC3)Cc4ccc(cc4)[S](C)(=O)=O)nc5ncccc25" WB3 SMILES CACTVS 3.385 "Cc1cc(C=CC#N)cc(C)c1Oc2nc(NC3CCN(CC3)Cc4ccc(cc4)[S](C)(=O)=O)nc5ncccc25" WB3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1Oc2c3cccnc3nc(n2)NC4CCN(CC4)Cc5ccc(cc5)S(=O)(=O)C)C)/C=C/C#N" WB3 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1Oc2c3cccnc3nc(n2)NC4CCN(CC4)Cc5ccc(cc5)S(=O)(=O)C)C)C=CC#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WB3 "SYSTEMATIC NAME" ACDLabs 12.01 "(2E)-3-[4-({2-[(1-{[4-(methanesulfonyl)phenyl]methyl}piperidin-4-yl)amino]pyrido[2,3-d]pyrimidin-4-yl}oxy)-3,5-dimethylphenyl]prop-2-enenitrile" WB3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(~{E})-3-[3,5-dimethyl-4-[2-[[1-[(4-methylsulfonylphenyl)methyl]piperidin-4-yl]amino]pyrido[2,3-d]pyrimidin-4-yl]oxy-phenyl]prop-2-enenitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WB3 "Create component" 2022-05-27 RCSB WB3 "Initial release" 2025-05-07 RCSB #