data_WB4 # _chem_comp.id WB4 _chem_comp.name "N-{(1S)-5-{[2-(methylsulfanyl)benzene-1-carbonyl]amino}-1-[5-(naphthalen-2-yl)-1H-imidazol-2-yl]pentyl}-1,3-thiazole-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H29 N5 O2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-06 _chem_comp.pdbx_modified_date 2020-12-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 555.714 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WB4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KBH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WB4 C1 C1 C 0 1 N N S 45.749 12.092 -37.482 1.013 0.123 -1.613 C1 WB4 1 WB4 N2 N1 N 0 1 N N N 46.298 11.570 -36.245 1.101 -1.283 -1.211 N2 WB4 2 WB4 C3 C2 C 0 1 Y N N 43.985 9.736 -39.515 3.830 2.347 -1.144 C3 WB4 3 WB4 C4 C3 C 0 1 Y N N 45.082 8.947 -39.249 4.411 1.178 -0.761 C4 WB4 4 WB4 C11 C4 C 0 1 Y N N 46.747 4.024 -41.579 9.743 0.418 0.998 C11 WB4 5 WB4 C13 C5 C 0 1 Y N N 48.948 4.376 -40.717 10.148 2.764 0.711 C13 WB4 6 WB4 C14 C6 C 0 1 Y N N 48.570 5.569 -40.171 8.873 2.977 0.284 C14 WB4 7 WB4 C15 C7 C 0 1 N N N 45.679 11.699 -35.071 1.368 -1.602 0.071 C15 WB4 8 WB4 C16 C8 C 0 1 Y N N 46.515 11.392 -33.897 1.456 -3.010 0.473 C16 WB4 9 WB4 C17 C9 C 0 1 Y N N 47.823 10.998 -33.828 1.717 -3.471 1.722 C17 WB4 10 WB4 C24 C10 C 0 1 Y N N 48.333 15.378 -45.593 -8.671 0.820 0.388 C24 WB4 11 WB4 C26 C11 C 0 1 Y N N 50.205 16.631 -46.456 -9.354 2.460 2.001 C26 WB4 12 WB4 C27 C12 C 0 1 Y N N 50.160 17.470 -45.365 -8.035 2.849 2.176 C27 WB4 13 WB4 C28 C13 C 0 1 Y N N 49.210 17.279 -44.380 -7.028 2.234 1.465 C28 WB4 14 WB4 O1 O1 O 0 1 N N N 46.370 17.035 -43.338 -6.532 -0.340 -0.984 O1 WB4 15 WB4 C22 C14 C 0 1 N N N 47.311 16.245 -43.349 -6.261 0.549 -0.200 C22 WB4 16 WB4 C23 C15 C 0 1 Y N N 48.282 16.241 -44.479 -7.334 1.212 0.563 C23 WB4 17 WB4 C25 C16 C 0 1 Y N N 49.298 15.592 -46.577 -9.674 1.453 1.114 C25 WB4 18 WB4 S1 S1 S 0 1 N N N 47.286 13.968 -45.833 -9.077 -0.462 -0.751 S1 WB4 19 WB4 C29 C17 C 0 1 N N N 45.634 14.558 -45.453 -10.881 -0.582 -0.605 C29 WB4 20 WB4 N4 N2 N 0 1 N N N 47.534 15.386 -42.356 -4.979 0.929 -0.029 N4 WB4 21 WB4 C21 C18 C 0 1 N N N 46.586 15.207 -41.271 -3.913 0.270 -0.787 C21 WB4 22 WB4 C20 C19 C 0 1 N N N 47.218 14.477 -40.125 -2.564 0.884 -0.408 C20 WB4 23 WB4 C19 C20 C 0 1 N N N 46.186 13.832 -39.236 -1.450 0.197 -1.200 C19 WB4 24 WB4 C C21 C 0 1 N N N 46.800 12.910 -38.222 -0.101 0.811 -0.821 C WB4 25 WB4 O O2 O 0 1 N N N 44.507 12.055 -34.947 1.536 -0.723 0.895 O WB4 26 WB4 S S2 S 0 1 Y N N 45.884 11.513 -32.311 1.235 -4.407 -0.579 S WB4 27 WB4 C18 C22 C 0 1 Y N N 47.418 11.031 -31.694 1.518 -5.457 0.741 C18 WB4 28 WB4 N3 N3 N 0 1 Y N N 48.340 10.792 -32.568 1.741 -4.776 1.819 N3 WB4 29 WB4 C2 C23 C 0 1 Y N N 45.265 10.934 -38.304 2.326 0.808 -1.333 C2 WB4 30 WB4 N1 N4 N 0 1 Y N N 45.893 9.741 -38.475 3.447 0.203 -0.884 N1 WB4 31 WB4 N N5 N 0 1 Y N N 44.104 10.972 -38.925 2.563 2.084 -1.484 N WB4 32 WB4 C5 C24 C 0 1 Y N N 45.511 7.678 -39.862 5.805 0.991 -0.303 C5 WB4 33 WB4 C10 C25 C 0 1 Y N N 44.598 6.890 -40.567 6.254 -0.291 0.058 C10 WB4 34 WB4 C9 C26 C 0 1 Y N N 44.981 5.715 -41.139 7.529 -0.488 0.481 C9 WB4 35 WB4 C8 C27 C 0 1 Y N N 46.313 5.251 -41.024 8.419 0.597 0.562 C8 WB4 36 WB4 C12 C28 C 0 1 Y N N 48.037 3.604 -41.421 10.582 1.488 1.066 C12 WB4 37 WB4 C7 C29 C 0 1 Y N N 47.245 6.040 -40.307 7.978 1.896 0.201 C7 WB4 38 WB4 C6 C30 C 0 1 Y N N 46.813 7.258 -39.740 6.657 2.080 -0.234 C6 WB4 39 WB4 H1 H1 H 0 1 N N N 44.894 12.746 -37.255 0.792 0.183 -2.678 H1 WB4 40 WB4 H2 H2 H 0 1 N N N 47.177 11.094 -36.274 0.967 -1.985 -1.868 H2 WB4 41 WB4 H3 H3 H 0 1 N N N 43.140 9.424 -40.111 4.305 3.317 -1.165 H3 WB4 42 WB4 H4 H4 H 0 1 N N N 46.051 3.413 -42.134 10.092 -0.564 1.281 H4 WB4 43 WB4 H5 H5 H 0 1 N N N 49.965 4.031 -40.599 10.834 3.596 0.774 H5 WB4 44 WB4 H6 H6 H 0 1 N N N 49.293 6.160 -39.628 8.551 3.971 0.012 H6 WB4 45 WB4 H7 H7 H 0 1 N N N 48.420 10.856 -34.717 1.890 -2.817 2.564 H7 WB4 46 WB4 H8 H8 H 0 1 N N N 50.952 16.784 -47.221 -10.136 2.948 2.562 H8 WB4 47 WB4 H9 H9 H 0 1 N N N 50.869 18.280 -45.279 -7.796 3.638 2.872 H9 WB4 48 WB4 H10 H10 H 0 1 N N N 49.185 17.939 -43.526 -6.002 2.541 1.606 H10 WB4 49 WB4 H11 H11 H 0 1 N N N 49.338 14.943 -47.439 -10.704 1.156 0.984 H11 WB4 50 WB4 H12 H12 H 0 1 N N N 44.913 13.737 -45.578 -11.331 0.374 -0.872 H12 WB4 51 WB4 H13 H13 H 0 1 N N N 45.603 14.918 -44.414 -11.249 -1.357 -1.276 H13 WB4 52 WB4 H14 H14 H 0 1 N N N 45.373 15.381 -46.134 -11.147 -0.834 0.422 H14 WB4 53 WB4 H15 H15 H 0 1 N N N 48.378 14.849 -42.358 -4.763 1.638 0.597 H15 WB4 54 WB4 H16 H16 H 0 1 N N N 46.244 16.194 -40.925 -3.905 -0.795 -0.553 H16 WB4 55 WB4 H17 H17 H 0 1 N N N 45.725 14.628 -41.636 -4.088 0.407 -1.854 H17 WB4 56 WB4 H18 H18 H 0 1 N N N 47.883 13.696 -40.523 -2.571 1.949 -0.641 H18 WB4 57 WB4 H19 H19 H 0 1 N N N 47.806 15.191 -39.529 -2.389 0.747 0.659 H19 WB4 58 WB4 H20 H20 H 0 1 N N N 45.633 14.622 -38.706 -1.442 -0.868 -0.967 H20 WB4 59 WB4 H21 H21 H 0 1 N N N 45.491 13.255 -39.863 -1.625 0.334 -2.267 H21 WB4 60 WB4 H22 H22 H 0 1 N N N 47.487 12.222 -38.737 0.074 0.674 0.246 H22 WB4 61 WB4 H23 H23 H 0 1 N N N 47.362 13.510 -37.491 -0.108 1.875 -1.054 H23 WB4 62 WB4 H24 H24 H 0 1 N N N 47.600 10.934 -30.634 1.507 -6.535 0.683 H24 WB4 63 WB4 H25 H25 H 0 1 N N N 46.786 9.487 -38.104 3.553 -0.741 -0.686 H25 WB4 64 WB4 H27 H27 H 0 1 N N N 43.573 7.218 -40.660 5.576 -1.130 -0.001 H27 WB4 65 WB4 H28 H28 H 0 1 N N N 44.258 5.129 -41.688 7.859 -1.479 0.756 H28 WB4 66 WB4 H29 H29 H 0 1 N N N 48.350 2.663 -41.848 11.599 1.346 1.401 H29 WB4 67 WB4 H30 H30 H 0 1 N N N 47.519 7.871 -39.200 6.308 3.063 -0.513 H30 WB4 68 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WB4 C25 C26 DOUB Y N 1 WB4 C25 C24 SING Y N 2 WB4 C26 C27 SING Y N 3 WB4 S1 C24 SING N N 4 WB4 S1 C29 SING N N 5 WB4 C24 C23 DOUB Y N 6 WB4 C27 C28 DOUB Y N 7 WB4 C23 C28 SING Y N 8 WB4 C23 C22 SING N N 9 WB4 C22 O1 DOUB N N 10 WB4 C22 N4 SING N N 11 WB4 N4 C21 SING N N 12 WB4 C11 C12 DOUB Y N 13 WB4 C11 C8 SING Y N 14 WB4 C12 C13 SING Y N 15 WB4 C21 C20 SING N N 16 WB4 C9 C8 DOUB Y N 17 WB4 C9 C10 SING Y N 18 WB4 C8 C7 SING Y N 19 WB4 C13 C14 DOUB Y N 20 WB4 C10 C5 DOUB Y N 21 WB4 C7 C14 SING Y N 22 WB4 C7 C6 DOUB Y N 23 WB4 C20 C19 SING N N 24 WB4 C5 C6 SING Y N 25 WB4 C5 C4 SING N N 26 WB4 C3 C4 DOUB Y N 27 WB4 C3 N SING Y N 28 WB4 C4 N1 SING Y N 29 WB4 C19 C SING N N 30 WB4 N C2 DOUB Y N 31 WB4 N1 C2 SING Y N 32 WB4 C2 C1 SING N N 33 WB4 C C1 SING N N 34 WB4 C1 N2 SING N N 35 WB4 N2 C15 SING N N 36 WB4 C15 O DOUB N N 37 WB4 C15 C16 SING N N 38 WB4 C16 C17 DOUB Y N 39 WB4 C16 S SING Y N 40 WB4 C17 N3 SING Y N 41 WB4 N3 C18 DOUB Y N 42 WB4 S C18 SING Y N 43 WB4 C1 H1 SING N N 44 WB4 N2 H2 SING N N 45 WB4 C3 H3 SING N N 46 WB4 C11 H4 SING N N 47 WB4 C13 H5 SING N N 48 WB4 C14 H6 SING N N 49 WB4 C17 H7 SING N N 50 WB4 C26 H8 SING N N 51 WB4 C27 H9 SING N N 52 WB4 C28 H10 SING N N 53 WB4 C25 H11 SING N N 54 WB4 C29 H12 SING N N 55 WB4 C29 H13 SING N N 56 WB4 C29 H14 SING N N 57 WB4 N4 H15 SING N N 58 WB4 C21 H16 SING N N 59 WB4 C21 H17 SING N N 60 WB4 C20 H18 SING N N 61 WB4 C20 H19 SING N N 62 WB4 C19 H20 SING N N 63 WB4 C19 H21 SING N N 64 WB4 C H22 SING N N 65 WB4 C H23 SING N N 66 WB4 C18 H24 SING N N 67 WB4 N1 H25 SING N N 68 WB4 C10 H27 SING N N 69 WB4 C9 H28 SING N N 70 WB4 C12 H29 SING N N 71 WB4 C6 H30 SING N N 72 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WB4 SMILES ACDLabs 12.01 "C(NC(=O)c1cncs1)(CCCCNC(=O)c2c(cccc2)SC)c3nc(cn3)c4cc5ccccc5cc4" WB4 InChI InChI 1.03 "InChI=1S/C30H29N5O2S2/c1-38-26-12-5-4-10-23(26)29(36)32-15-7-6-11-24(35-30(37)27-18-31-19-39-27)28-33-17-25(34-28)22-14-13-20-8-2-3-9-21(20)16-22/h2-5,8-10,12-14,16-19,24H,6-7,11,15H2,1H3,(H,32,36)(H,33,34)(H,35,37)/t24-/m0/s1" WB4 InChIKey InChI 1.03 IBVNIPPBTCWYJG-DEOSSOPVSA-N WB4 SMILES_CANONICAL CACTVS 3.385 "CSc1ccccc1C(=O)NCCCC[C@H](NC(=O)c2scnc2)c3[nH]c(cn3)c4ccc5ccccc5c4" WB4 SMILES CACTVS 3.385 "CSc1ccccc1C(=O)NCCCC[CH](NC(=O)c2scnc2)c3[nH]c(cn3)c4ccc5ccccc5c4" WB4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CSc1ccccc1C(=O)NCCCC[C@@H](c2[nH]c(cn2)c3ccc4ccccc4c3)NC(=O)c5cncs5" WB4 SMILES "OpenEye OEToolkits" 2.0.7 "CSc1ccccc1C(=O)NCCCCC(c2[nH]c(cn2)c3ccc4ccccc4c3)NC(=O)c5cncs5" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WB4 "SYSTEMATIC NAME" ACDLabs 12.01 "N-{(1S)-5-{[2-(methylsulfanyl)benzene-1-carbonyl]amino}-1-[5-(naphthalen-2-yl)-1H-imidazol-2-yl]pentyl}-1,3-thiazole-5-carboxamide" WB4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{S})-5-[(2-methylsulfanylphenyl)carbonylamino]-1-(5-naphthalen-2-yl-1~{H}-imidazol-2-yl)pentyl]-1,3-thiazole-5-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WB4 "Create component" 2020-10-06 RCSB WB4 "Initial release" 2020-12-30 RCSB ##