data_WBE
#
_chem_comp.id WBE
_chem_comp.name "2-cyano-D-phenylalanyl-N-[(2S)-4-({3-[(5-amino-4H-1,2,4-triazol-3-yl)amino]propyl}amino)-1-(4-fluorophenyl)-4-oxobutan-2-yl]-2,4-dichloro-D-phenylalaninamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H37 Cl2 F N10 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-09-29
_chem_comp.pdbx_modified_date 2024-12-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 723.627
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code WBE
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8UDM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WBE C1 C1 C 0 1 N N N N N N 8.350 0.083 21.130 2.771 1.246 -0.403 C1 WBE 1
WBE C2 C2 C 0 1 N N R N N N 8.622 -1.501 22.952 1.229 -0.165 0.850 C2 WBE 2
WBE C3 C3 C 0 1 N N N N N N 8.788 -1.257 24.453 1.693 -0.050 2.303 C3 WBE 3
WBE C4 C4 C 0 1 Y N N N N N 7.636 -0.357 24.973 2.193 1.347 2.562 C4 WBE 4
WBE C5 C5 C 0 1 Y N N N N N 6.443 -0.925 25.421 1.302 2.348 2.907 C5 WBE 5
WBE C6 C6 C 0 1 Y N N N N N 5.415 -0.119 25.883 1.761 3.631 3.145 C6 WBE 6
WBE C9 C7 C 0 1 Y N N N N N 7.796 1.019 24.971 3.542 1.628 2.461 C9 WBE 7
WBE N10 N1 N 0 1 N N N N N N 9.643 -15.758 17.193 -10.883 2.956 -3.398 N10 WBE 8
WBE C11 C8 C 0 1 N N S N N N 9.756 -5.050 21.985 -1.056 -3.225 1.120 C11 WBE 9
WBE C14 C9 C 0 1 Y N N N N N 9.890 -6.849 24.761 1.425 -5.294 0.478 C14 WBE 10
WBE C16 C10 C 0 1 Y N N N N N 8.675 -6.236 26.748 3.714 -4.594 0.567 C16 WBE 11
WBE C17 C11 C 0 1 Y N N N N N 7.675 -5.672 25.967 3.398 -3.687 1.563 C17 WBE 12
WBE C19 C12 C 0 1 N N N N N N 10.021 -5.101 20.476 -2.529 -3.195 1.534 C19 WBE 13
WBE C21 C13 C 0 1 N N N N N N 11.529 -8.177 18.679 -5.345 -1.164 -0.077 C21 WBE 14
WBE C22 C14 C 0 1 N N N N N N 10.838 -9.542 18.952 -6.818 -1.134 0.336 C22 WBE 15
WBE C23 C15 C 0 1 N N N N N N 9.546 -9.654 18.098 -7.587 -0.184 -0.584 C23 WBE 16
WBE C24 C16 C 0 1 N N R N N N 8.856 1.326 20.353 3.951 1.424 -1.322 C24 WBE 17
WBE C10 C17 C 0 1 N N N N N N 9.527 -2.687 22.587 0.616 -1.523 0.624 C10 WBE 18
WBE C12 C18 C 0 1 N N N N N N 9.021 -6.313 22.438 -0.312 -4.266 1.958 C12 WBE 19
WBE C13 C19 C 0 1 Y N N N N N 8.888 -6.285 23.979 1.109 -4.383 1.469 C13 WBE 20
WBE C15 C20 C 0 1 Y N N N N N 9.781 -6.827 26.147 2.727 -5.402 0.028 C15 WBE 21
WBE C18 C21 C 0 1 Y N N N N N 7.783 -5.701 24.583 2.095 -3.580 2.011 C18 WBE 22
WBE C20 C22 C 0 1 N N N N N N 10.949 -6.285 20.111 -3.286 -2.259 0.627 C20 WBE 23
WBE C25 C23 C 0 1 N N N N N N 8.858 0.998 18.844 3.512 1.186 -2.769 C25 WBE 24
WBE C26 C24 C 0 1 Y N N N N N 9.698 -0.283 18.503 4.714 1.243 -3.675 C26 WBE 25
WBE C27 C25 C 0 1 Y N N N N N 9.150 -1.256 17.685 5.496 0.102 -3.873 C27 WBE 26
WBE C28 C26 C 0 1 N N N N N N 7.751 -1.047 17.147 5.158 -1.124 -3.215 C28 WBE 27
WBE C29 C27 C 0 1 Y N N N N N 9.860 -2.406 17.335 6.608 0.163 -4.714 C29 WBE 28
WBE C30 C28 C 0 1 Y N N N N N 11.137 -2.596 17.830 6.928 1.348 -5.345 C30 WBE 29
WBE C31 C29 C 0 1 Y N N N N N 11.690 -1.625 18.657 6.149 2.474 -5.144 C31 WBE 30
WBE C32 C30 C 0 1 Y N N N N N 10.980 -0.480 18.994 5.042 2.419 -4.316 C32 WBE 31
WBE C33 C31 C 0 1 Y N N N N N 9.430 -12.171 17.723 -9.898 0.641 -0.883 C33 WBE 32
WBE C34 C32 C 0 1 Y N N N N N 9.744 -14.298 17.196 -10.757 2.059 -2.346 C34 WBE 33
WBE C7 C33 C 0 1 Y N N N N N 5.576 1.255 25.874 3.111 3.913 3.038 C7 WBE 34
WBE C8 C34 C 0 1 Y N N N N N 6.762 1.830 25.425 4.002 2.910 2.699 C8 WBE 35
WBE CL1 CL1 CL 0 0 N N N N N N 6.232 -2.633 25.415 -0.393 1.994 3.041 CL1 WBE 36
WBE CL2 CL2 CL 0 0 N N N N N N 4.284 2.250 26.444 3.688 5.523 3.336 CL2 WBE 37
WBE F1 F1 F 0 1 N N N N N N 8.565 -6.211 28.092 4.988 -4.699 0.128 F1 WBE 38
WBE N1 N2 N 0 1 N N N N N N 9.028 -0.321 22.204 2.377 0.008 -0.044 N1 WBE 39
WBE N2 N3 N 0 1 N N N N N N 8.959 -3.859 22.306 -0.460 -1.904 1.340 N2 WBE 40
WBE N3 N4 N 0 1 N N N N N N 10.639 -7.047 19.064 -4.609 -2.073 0.804 N3 WBE 41
WBE N4 N5 N 0 1 N N N N N N 8.096 2.525 20.611 4.475 2.789 -1.188 N4 WBE 42
WBE N5 N6 N 0 1 N N N N N N 6.720 -0.902 16.759 4.890 -2.097 -2.694 N5 WBE 43
WBE N6 N7 N 0 1 N N N N N N 8.932 -10.956 18.386 -8.998 -0.156 -0.188 N6 WBE 44
WBE N7 N8 N 0 1 Y N N N N N 9.070 -13.453 18.039 -9.604 1.443 -1.949 N7 WBE 45
WBE N8 N9 N 0 1 Y N N N N N 10.485 -13.567 16.397 -11.725 1.647 -1.564 N8 WBE 46
WBE N9 N10 N 0 1 Y N N N N N 10.285 -12.218 16.730 -11.180 0.751 -0.635 N9 WBE 47
WBE O1 O1 O 0 1 N N N N N N 7.352 -0.530 20.733 2.179 2.217 0.018 O1 WBE 48
WBE O2 O2 O 0 1 N N N N N N 11.929 -6.505 20.746 -2.705 -1.674 -0.263 O2 WBE 49
WBE O3 O3 O 0 1 N N N N N N 10.712 -2.553 22.594 1.091 -2.273 -0.203 O3 WBE 50
WBE H1 H1 H 0 1 N N N N N N 7.575 -1.757 22.734 0.488 0.607 0.643 H1 WBE 51
WBE H2 H2 H 0 1 N N N N N N 8.766 -2.220 24.984 0.858 -0.267 2.970 H2 WBE 52
WBE H3 H3 H 0 1 N N N N N N 9.751 -0.759 24.637 2.497 -0.763 2.486 H3 WBE 53
WBE H4 H4 H 0 1 N N N N N N 4.498 -0.559 26.246 1.066 4.413 3.414 H4 WBE 54
WBE H5 H5 H 0 1 N N N N N N 8.718 1.459 24.619 4.238 0.846 2.197 H5 WBE 55
WBE H6 H6 H 0 1 N N N N N N 10.233 -16.132 16.478 -10.106 3.196 -3.927 H6 WBE 56
WBE H7 H7 H 0 1 N N N N N N 9.931 -16.114 18.082 -11.749 3.343 -3.605 H7 WBE 57
WBE H8 H8 H 0 1 N N N N N N 10.721 -4.997 22.510 -0.980 -3.486 0.065 H8 WBE 58
WBE H9 H9 H 0 1 N N N N N N 10.751 -7.303 24.293 0.655 -5.924 0.058 H9 WBE 59
WBE H10 H10 H 0 1 N N N N N N 6.817 -5.213 26.434 4.168 -3.062 1.990 H10 WBE 60
WBE H11 H11 H 0 1 N N N N N N 10.499 -4.161 20.164 -2.949 -4.197 1.454 H11 WBE 61
WBE H12 H12 H 0 1 N N N N N N 9.064 -5.219 19.947 -2.610 -2.847 2.564 H12 WBE 62
WBE H13 H13 H 0 1 N N N N N N 12.458 -8.120 19.265 -5.264 -1.511 -1.107 H13 WBE 63
WBE H14 H14 H 0 1 N N N N N N 11.766 -8.101 17.607 -4.925 -0.161 0.002 H14 WBE 64
WBE H15 H15 H 0 1 N N N N N N 10.579 -9.614 20.019 -7.238 -2.137 0.257 H15 WBE 65
WBE H16 H16 H 0 1 N N N N N N 11.524 -10.359 18.686 -6.899 -0.787 1.366 H16 WBE 66
WBE H17 H17 H 0 1 N N N N N N 9.796 -9.586 17.029 -7.167 0.818 -0.505 H17 WBE 67
WBE H18 H18 H 0 1 N N N N N N 8.850 -8.845 18.364 -7.506 -0.532 -1.614 H18 WBE 68
WBE H19 H19 H 0 1 N N N N N N 9.900 1.499 20.654 4.730 0.708 -1.057 H19 WBE 69
WBE H20 H20 H 0 1 N N N N N N 8.021 -6.343 21.981 -0.311 -3.958 3.004 H20 WBE 70
WBE H21 H21 H 0 1 N N N N N N 9.591 -7.203 22.132 -0.809 -5.231 1.864 H21 WBE 71
WBE H22 H22 H 0 1 N N N N N N 10.555 -7.269 26.757 2.975 -6.116 -0.743 H22 WBE 72
WBE H23 H23 H 0 1 N N N N N N 7.004 -5.267 23.974 1.847 -2.869 2.786 H23 WBE 73
WBE H24 H24 H 0 1 N N N N N N 9.284 1.853 18.299 3.042 0.206 -2.849 H24 WBE 74
WBE H25 H25 H 0 1 N N N N N N 7.820 0.835 18.518 2.799 1.956 -3.063 H25 WBE 75
WBE H26 H26 H 0 1 N N N N N N 9.415 -3.142 16.682 7.217 -0.715 -4.871 H26 WBE 76
WBE H27 H27 H 0 1 N N N N N N 11.696 -3.485 17.578 7.788 1.397 -5.996 H27 WBE 77
WBE H28 H28 H 0 1 N N N N N N 12.689 -1.763 19.044 6.404 3.399 -5.640 H28 WBE 78
WBE H29 H29 H 0 1 N N N N N N 11.428 0.260 19.641 4.436 3.301 -4.167 H29 WBE 79
WBE H30 H30 H 0 1 N N N N N N 6.878 2.904 25.429 5.057 3.129 2.621 H30 WBE 80
WBE H31 H31 H 0 1 N N N N N N 9.830 0.196 22.501 2.853 -0.768 -0.378 H31 WBE 81
WBE H32 H32 H 0 1 N N N N N N 7.962 -3.930 22.314 -0.840 -1.305 2.001 H32 WBE 82
WBE H33 H33 H 0 1 N N N N N N 9.810 -6.861 18.537 -5.074 -2.541 1.516 H33 WBE 83
WBE H34 H34 H 0 1 N N N N N N 8.106 2.722 21.591 5.306 2.914 -1.746 H34 WBE 84
WBE H35 H35 H 0 1 N N N N N N 8.503 3.291 20.113 3.772 3.472 -1.429 H35 WBE 85
WBE H37 H37 H 0 1 N N N N N N 7.963 -10.876 18.151 -9.302 -0.694 0.559 H37 WBE 86
WBE H38 H38 H 0 1 N N N N N N 8.429 -13.725 18.757 -8.729 1.556 -2.353 H38 WBE 87
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WBE N8 N9 SING Y N 1
WBE N8 C34 DOUB Y N 2
WBE N9 C33 DOUB Y N 3
WBE N5 C28 TRIP N N 4
WBE C28 C27 SING N N 5
WBE N10 C34 SING N N 6
WBE C34 N7 SING Y N 7
WBE C29 C27 DOUB Y N 8
WBE C29 C30 SING Y N 9
WBE C27 C26 SING Y N 10
WBE C33 N7 SING Y N 11
WBE C33 N6 SING N N 12
WBE C30 C31 DOUB Y N 13
WBE C23 N6 SING N N 14
WBE C23 C22 SING N N 15
WBE C26 C25 SING N N 16
WBE C26 C32 DOUB Y N 17
WBE C31 C32 SING Y N 18
WBE C21 C22 SING N N 19
WBE C21 N3 SING N N 20
WBE C25 C24 SING N N 21
WBE N3 C20 SING N N 22
WBE C20 C19 SING N N 23
WBE C20 O2 DOUB N N 24
WBE C24 N4 SING N N 25
WBE C24 C1 SING N N 26
WBE C19 C11 SING N N 27
WBE O1 C1 DOUB N N 28
WBE C1 N1 SING N N 29
WBE C11 N2 SING N N 30
WBE C11 C12 SING N N 31
WBE N1 C2 SING N N 32
WBE N2 C10 SING N N 33
WBE C12 C13 SING N N 34
WBE C10 O3 DOUB N N 35
WBE C10 C2 SING N N 36
WBE C2 C3 SING N N 37
WBE C13 C18 DOUB Y N 38
WBE C13 C14 SING Y N 39
WBE C3 C4 SING N N 40
WBE C18 C17 SING Y N 41
WBE C14 C15 DOUB Y N 42
WBE C9 C4 DOUB Y N 43
WBE C9 C8 SING Y N 44
WBE C4 C5 SING Y N 45
WBE CL1 C5 SING N N 46
WBE C5 C6 DOUB Y N 47
WBE C8 C7 DOUB Y N 48
WBE C7 C6 SING Y N 49
WBE C7 CL2 SING N N 50
WBE C17 C16 DOUB Y N 51
WBE C15 C16 SING Y N 52
WBE C16 F1 SING N N 53
WBE C2 H1 SING N N 54
WBE C3 H2 SING N N 55
WBE C3 H3 SING N N 56
WBE C6 H4 SING N N 57
WBE C9 H5 SING N N 58
WBE N10 H6 SING N N 59
WBE N10 H7 SING N N 60
WBE C11 H8 SING N N 61
WBE C14 H9 SING N N 62
WBE C17 H10 SING N N 63
WBE C19 H11 SING N N 64
WBE C19 H12 SING N N 65
WBE C21 H13 SING N N 66
WBE C21 H14 SING N N 67
WBE C22 H15 SING N N 68
WBE C22 H16 SING N N 69
WBE C23 H17 SING N N 70
WBE C23 H18 SING N N 71
WBE C24 H19 SING N N 72
WBE C12 H20 SING N N 73
WBE C12 H21 SING N N 74
WBE C15 H22 SING N N 75
WBE C18 H23 SING N N 76
WBE C25 H24 SING N N 77
WBE C25 H25 SING N N 78
WBE C29 H26 SING N N 79
WBE C30 H27 SING N N 80
WBE C31 H28 SING N N 81
WBE C32 H29 SING N N 82
WBE C8 H30 SING N N 83
WBE N1 H31 SING N N 84
WBE N2 H32 SING N N 85
WBE N3 H33 SING N N 86
WBE N4 H34 SING N N 87
WBE N4 H35 SING N N 88
WBE N6 H37 SING N N 89
WBE N7 H38 SING N N 90
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WBE SMILES ACDLabs 12.01 "N#Cc1ccccc1CC(N)C(=O)NC(Cc1ccc(Cl)cc1Cl)C(=O)NC(Cc1ccc(F)cc1)CC(=O)NCCCNc1nnc(N)[NH]1"
WBE InChI InChI 1.06 "InChI=1S/C34H37Cl2FN10O3/c35-24-9-8-22(27(36)17-24)16-29(44-31(49)28(39)15-21-4-1-2-5-23(21)19-38)32(50)43-26(14-20-6-10-25(37)11-7-20)18-30(48)41-12-3-13-42-34-45-33(40)46-47-34/h1-2,4-11,17,26,28-29H,3,12-16,18,39H2,(H,41,48)(H,43,50)(H,44,49)(H4,40,42,45,46,47)/t26-,28+,29+/m0/s1"
WBE InChIKey InChI 1.06 GOXLDBPLZBPIRM-WIIGKZCBSA-N
WBE SMILES_CANONICAL CACTVS 3.385 "N[C@H](Cc1ccccc1C#N)C(=O)N[C@H](Cc2ccc(Cl)cc2Cl)C(=O)N[C@H](CC(=O)NCCCNc3[nH]c(N)nn3)Cc4ccc(F)cc4"
WBE SMILES CACTVS 3.385 "N[CH](Cc1ccccc1C#N)C(=O)N[CH](Cc2ccc(Cl)cc2Cl)C(=O)N[CH](CC(=O)NCCCNc3[nH]c(N)nn3)Cc4ccc(F)cc4"
WBE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C[C@H](C(=O)N[C@H](Cc2ccc(cc2Cl)Cl)C(=O)N[C@@H](Cc3ccc(cc3)F)CC(=O)NCCCNc4[nH]c(nn4)N)N)C#N"
WBE SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CC(C(=O)NC(Cc2ccc(cc2Cl)Cl)C(=O)NC(Cc3ccc(cc3)F)CC(=O)NCCCNc4[nH]c(nn4)N)N)C#N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WBE "SYSTEMATIC NAME" ACDLabs 12.01 "2-cyano-D-phenylalanyl-N-[(2S)-4-({3-[(5-amino-4H-1,2,4-triazol-3-yl)amino]propyl}amino)-1-(4-fluorophenyl)-4-oxobutan-2-yl]-2,4-dichloro-D-phenylalaninamide"
WBE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-[[(2~{R})-2-[[(2~{R})-2-azanyl-3-(2-cyanophenyl)propanoyl]amino]-3-(2,4-dichlorophenyl)propanoyl]amino]-~{N}-[3-[(5-azanyl-4~{H}-1,2,4-triazol-3-yl)amino]propyl]-4-(4-fluorophenyl)butanamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WBE "Create component" 2023-09-29 RCSB
WBE "Initial release" 2025-01-01 RCSB
#