data_WBN # _chem_comp.id WBN _chem_comp.name "(3~{R},5~{R})-~{N}-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]-5-oxidanyl-2-oxidanylidene-1-pyridin-2-yl-piperidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H22 N4 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-10 _chem_comp.pdbx_modified_date 2023-05-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 422.500 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WBN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8P0F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WBN N3 N1 N 0 1 Y N N -0.639 -27.219 34.112 -7.472 -1.278 0.149 N3 WBN 1 WBN C4 C1 C 0 1 Y N N 0.449 -27.004 34.782 -7.502 -1.381 -1.138 C4 WBN 2 WBN C6 C2 C 0 1 Y N N -1.438 -27.089 36.289 -5.498 -0.289 -0.214 C6 WBN 3 WBN C7 C3 C 0 1 Y N N -2.330 -27.029 37.473 -4.220 0.388 0.096 C7 WBN 4 WBN C8 C4 C 0 1 Y N N -3.382 -27.925 37.621 -3.384 -0.116 1.092 C8 WBN 5 WBN C10 C5 C 0 1 Y N N -4.072 -26.860 39.675 -1.829 1.657 0.678 C10 WBN 6 WBN N12 N2 N 0 1 N N N -4.444 -26.260 42.068 0.538 1.788 0.159 N12 WBN 7 WBN C13 C6 C 0 1 N N N -3.728 -27.046 42.877 1.798 2.256 0.270 C13 WBN 8 WBN C15 C7 C 0 1 N N R -2.937 -26.387 43.992 2.894 1.680 -0.589 C15 WBN 9 WBN C17 C8 C 0 1 N N R -1.555 -24.514 45.031 5.353 1.615 -0.945 C17 WBN 10 WBN C21 C9 C 0 1 N N N -3.611 -26.553 45.338 3.026 0.210 -0.311 C21 WBN 11 WBN C26 C10 C 0 1 Y N N -2.669 -28.252 49.929 4.160 -4.476 0.470 C26 WBN 12 WBN C28 C11 C 0 1 Y N N -3.055 -28.279 47.565 4.256 -2.655 -1.062 C28 WBN 13 WBN C1 C12 C 0 1 N N N -3.077 -27.469 34.352 -6.253 -0.514 2.170 C1 WBN 14 WBN C2 C13 C 0 1 Y N N -1.731 -27.254 34.956 -6.419 -0.701 0.683 C2 WBN 15 WBN S5 S1 S 0 1 Y N N 0.269 -26.848 36.483 -6.090 -0.703 -1.822 S5 WBN 16 WBN C9 C14 C 0 1 Y N N -4.238 -27.839 38.705 -2.193 0.520 1.377 C9 WBN 17 WBN C11 C15 C 0 1 N N N -5.037 -26.756 40.833 -0.527 2.348 0.994 C11 WBN 18 WBN O14 O1 O 0 1 N N N -3.724 -28.267 42.737 2.048 3.140 1.062 O14 WBN 19 WBN C16 C16 C 0 1 N N N -2.453 -24.927 43.870 4.213 2.390 -0.274 C16 WBN 20 WBN O18 O2 O 0 1 N N N -1.297 -23.103 44.977 6.574 2.345 -0.814 O18 WBN 21 WBN C19 C17 C 0 1 N N N -2.220 -24.806 46.365 5.491 0.255 -0.259 C19 WBN 22 WBN N20 N3 N 0 1 N N N -2.827 -26.136 46.364 4.198 -0.413 -0.187 N20 WBN 23 WBN O22 O3 O 0 1 N N N -4.790 -26.823 45.472 2.012 -0.445 -0.193 O22 WBN 24 WBN C23 C18 C 0 1 Y N N -2.711 -26.925 47.540 4.186 -1.791 0.024 C23 WBN 25 WBN N24 N4 N 0 1 Y N N -2.531 -26.215 48.681 4.113 -2.264 1.258 N24 WBN 26 WBN C25 C19 C 0 1 Y N N -2.496 -26.892 49.839 4.099 -3.561 1.503 C25 WBN 27 WBN C27 C20 C 0 1 Y N N -2.933 -28.950 48.769 4.243 -4.021 -0.838 C27 WBN 28 WBN C29 C21 C 0 1 Y N N -3.027 -25.958 39.521 -2.651 2.159 -0.315 C29 WBN 29 WBN C30 C22 C 0 1 Y N N -2.157 -26.050 38.447 -3.844 1.532 -0.610 C30 WBN 30 WBN H4 H1 H 0 1 N N N 1.412 -26.927 34.299 -8.305 -1.832 -1.702 H4 WBN 31 WBN H8 H2 H 0 1 N N N -3.533 -28.697 36.881 -3.667 -1.003 1.639 H8 WBN 32 WBN H12 H3 H 0 1 N N N -4.577 -25.301 42.318 0.338 1.081 -0.474 H12 WBN 33 WBN H15 H4 H 0 1 N N N -2.012 -26.978 44.066 2.646 1.829 -1.640 H15 WBN 34 WBN H17 H5 H 0 1 N N N -0.611 -25.075 44.970 5.125 1.470 -2.001 H17 WBN 35 WBN H26 H6 H 0 1 N N N -2.600 -28.759 50.880 4.147 -5.536 0.680 H26 WBN 36 WBN H28 H7 H 0 1 N N N -3.404 -28.784 46.676 4.319 -2.266 -2.068 H28 WBN 37 WBN H1C H8 H 0 1 N N N -2.978 -27.572 33.261 -5.661 -1.334 2.575 H1C WBN 38 WBN H1A H9 H 0 1 N N N -3.523 -28.385 34.767 -5.745 0.431 2.363 H1A WBN 39 WBN H1B H10 H 0 1 N N N -3.723 -26.609 34.582 -7.234 -0.503 2.646 H1B WBN 40 WBN H9 H11 H 0 1 N N N -5.049 -28.546 38.798 -1.544 0.131 2.148 H9 WBN 41 WBN H11A H12 H 0 0 N N N -5.850 -26.074 40.543 -0.624 3.415 0.794 H11A WBN 42 WBN H11B H13 H 0 0 N N N -5.450 -27.757 41.027 -0.282 2.197 2.046 H11B WBN 43 WBN H16A H14 H 0 0 N N N -1.889 -24.819 42.932 4.183 3.409 -0.661 H16A WBN 44 WBN H16B H15 H 0 0 N N N -3.331 -24.264 43.849 4.369 2.412 0.805 H16B WBN 45 WBN H18 H16 H 0 1 N N N -0.737 -22.855 45.703 7.340 1.904 -1.207 H18 WBN 46 WBN H19A H17 H 0 0 N N N -1.465 -24.755 47.163 6.187 -0.365 -0.824 H19A WBN 47 WBN H19B H18 H 0 0 N N N -3.001 -24.054 46.551 5.875 0.399 0.751 H19B WBN 48 WBN H25 H19 H 0 1 N N N -2.322 -26.338 50.750 4.038 -3.910 2.523 H25 WBN 49 WBN H27 H20 H 0 1 N N N -3.045 -30.024 48.801 4.297 -4.716 -1.662 H27 WBN 50 WBN H29 H21 H 0 1 N N N -2.891 -25.173 40.250 -2.359 3.044 -0.861 H29 WBN 51 WBN H30 H22 H 0 1 N N N -1.335 -25.354 38.365 -4.485 1.924 -1.385 H30 WBN 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WBN N3 C4 DOUB Y N 1 WBN N3 C2 SING Y N 2 WBN C1 C2 SING N N 3 WBN C4 S5 SING Y N 4 WBN C2 C6 DOUB Y N 5 WBN C6 S5 SING Y N 6 WBN C6 C7 SING N N 7 WBN C7 C8 DOUB Y N 8 WBN C7 C30 SING Y N 9 WBN C8 C9 SING Y N 10 WBN C30 C29 DOUB Y N 11 WBN C9 C10 DOUB Y N 12 WBN C29 C10 SING Y N 13 WBN C10 C11 SING N N 14 WBN C11 N12 SING N N 15 WBN N12 C13 SING N N 16 WBN O14 C13 DOUB N N 17 WBN C13 C15 SING N N 18 WBN C16 C15 SING N N 19 WBN C16 C17 SING N N 20 WBN C15 C21 SING N N 21 WBN O18 C17 SING N N 22 WBN C17 C19 SING N N 23 WBN C21 O22 DOUB N N 24 WBN C21 N20 SING N N 25 WBN N20 C19 SING N N 26 WBN N20 C23 SING N N 27 WBN C23 C28 DOUB Y N 28 WBN C23 N24 SING Y N 29 WBN C28 C27 SING Y N 30 WBN N24 C25 DOUB Y N 31 WBN C27 C26 DOUB Y N 32 WBN C25 C26 SING Y N 33 WBN C4 H4 SING N N 34 WBN C8 H8 SING N N 35 WBN N12 H12 SING N N 36 WBN C15 H15 SING N N 37 WBN C17 H17 SING N N 38 WBN C26 H26 SING N N 39 WBN C28 H28 SING N N 40 WBN C1 H1C SING N N 41 WBN C1 H1A SING N N 42 WBN C1 H1B SING N N 43 WBN C9 H9 SING N N 44 WBN C11 H11A SING N N 45 WBN C11 H11B SING N N 46 WBN C16 H16A SING N N 47 WBN C16 H16B SING N N 48 WBN O18 H18 SING N N 49 WBN C19 H19A SING N N 50 WBN C19 H19B SING N N 51 WBN C25 H25 SING N N 52 WBN C27 H27 SING N N 53 WBN C29 H29 SING N N 54 WBN C30 H30 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WBN InChI InChI 1.06 "InChI=1S/C22H22N4O3S/c1-14-20(30-13-25-14)16-7-5-15(6-8-16)11-24-21(28)18-10-17(27)12-26(22(18)29)19-4-2-3-9-23-19/h2-9,13,17-18,27H,10-12H2,1H3,(H,24,28)/t17-,18-/m1/s1" WBN InChIKey InChI 1.06 LCYOGYSKPSKGLU-QZTJIDSGSA-N WBN SMILES_CANONICAL CACTVS 3.385 "Cc1ncsc1c2ccc(CNC(=O)[C@H]3C[C@@H](O)CN(C3=O)c4ccccn4)cc2" WBN SMILES CACTVS 3.385 "Cc1ncsc1c2ccc(CNC(=O)[CH]3C[CH](O)CN(C3=O)c4ccccn4)cc2" WBN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(scn1)c2ccc(cc2)CNC(=O)[C@H]3C[C@H](CN(C3=O)c4ccccn4)O" WBN SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(scn1)c2ccc(cc2)CNC(=O)C3CC(CN(C3=O)c4ccccn4)O" # _pdbx_chem_comp_identifier.comp_id WBN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{R},5~{R})-~{N}-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]-5-oxidanyl-2-oxidanylidene-1-pyridin-2-yl-piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WBN "Create component" 2023-05-10 PDBE WBN "Initial release" 2023-05-31 RCSB #