data_WC0
#
_chem_comp.id WC0
_chem_comp.name "2-cyano-D-phenylalanyl-2,4-dichloro-N-[(2S)-4-{[2-(dimethylamino)ethyl]amino}-1-(4-fluorophenyl)-4-oxobutan-2-yl]-D-phenylalaninamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C33 H37 Cl2 F N6 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-09-29
_chem_comp.pdbx_modified_date 2024-12-20
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 655.590
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code WC0
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8UDQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WC0 C1 C1 C 0 1 N N N N N N -11.265 13.076 68.109 2.013 0.788 -0.612 C1 WC0 1
WC0 C2 C2 C 0 1 N N R N N N -10.732 11.179 69.537 -0.064 0.317 0.572 C2 WC0 2
WC0 O2 O1 O 0 1 N N N N N N -8.076 6.429 66.421 -3.966 -0.839 -0.987 O2 WC0 3
WC0 C3 C3 C 0 1 N N N N N N -10.472 11.340 71.037 0.123 0.954 1.951 C3 WC0 4
WC0 O3 O2 O 0 1 N N N N N N -8.753 10.015 68.878 -0.556 -1.982 0.370 O3 WC0 5
WC0 C4 C4 C 0 1 Y N N N N N -11.496 12.431 71.559 0.921 2.226 1.812 C4 WC0 6
WC0 C5 C5 C 0 1 Y N N N N N -12.741 12.035 72.046 0.282 3.412 1.497 C5 WC0 7
WC0 C6 C6 C 0 1 Y N N N N N -13.635 13.000 72.489 1.014 4.579 1.370 C6 WC0 8
WC0 C11 C7 C 0 1 N N S N N N -9.954 7.568 68.349 -3.094 -1.914 1.276 C11 WC0 9
WC0 C12 C8 C 0 1 N N N N N N -10.569 6.387 69.089 -2.834 -2.613 2.612 C12 WC0 10
WC0 C13 C9 C 0 1 Y N N N N N -10.502 6.577 70.649 -1.430 -3.161 2.627 C13 WC0 11
WC0 C14 C10 C 0 1 Y N N N N N -9.475 5.988 71.382 -1.184 -4.441 2.167 C14 WC0 12
WC0 C15 C11 C 0 1 Y N N N N N -9.418 6.156 72.764 0.103 -4.945 2.180 C15 WC0 13
WC0 C16 C12 C 0 1 Y N N N N N -10.389 6.911 73.418 1.146 -4.167 2.654 C16 WC0 14
WC0 C17 C13 C 0 1 Y N N N N N -11.417 7.498 72.689 0.897 -2.885 3.115 C17 WC0 15
WC0 C18 C14 C 0 1 Y N N N N N -11.473 7.326 71.311 -0.389 -2.382 3.096 C18 WC0 16
WC0 C19 C15 C 0 1 N N N N N N -10.200 7.408 66.851 -4.556 -1.466 1.211 C19 WC0 17
WC0 C21 C16 C 0 1 N N N N N N -8.834 4.261 65.091 -6.356 0.136 -1.763 C21 WC0 18
WC0 C22 C17 C 0 1 N N N N N N -9.431 3.559 63.853 -7.818 0.583 -1.829 C22 WC0 19
WC0 C23 C18 C 0 1 N N N N N N -7.073 3.647 63.197 -8.001 0.115 -4.198 C23 WC0 20
WC0 C24 C19 C 0 1 N N N N N N -8.534 2.027 62.238 -9.413 1.800 -3.184 C24 WC0 21
WC0 C25 C20 C 0 1 N N R N N N -10.859 14.427 67.472 3.353 0.362 -1.154 C25 WC0 22
WC0 C26 C21 C 0 1 N N N N N N -10.925 14.373 65.938 3.154 -0.386 -2.474 C26 WC0 23
WC0 C10 C22 C 0 1 N N N N N N -9.924 9.943 69.034 -0.963 -0.886 0.693 C10 WC0 24
WC0 C20 C23 C 0 1 N N N N N N -9.250 6.318 66.277 -4.843 -0.888 -0.151 C20 WC0 25
WC0 C27 C24 C 0 1 Y N N N N N -10.087 13.149 65.439 4.480 -0.919 -2.954 C27 WC0 26
WC0 C28 C25 C 0 1 Y N N N N N -10.686 12.258 64.566 4.949 -2.149 -2.489 C28 WC0 27
WC0 C29 C26 C 0 1 N N N N N N -12.125 12.531 64.158 4.176 -2.906 -1.551 C29 WC0 28
WC0 C30 C27 C 0 1 Y N N N N N -9.993 11.148 64.094 6.176 -2.638 -2.943 C30 WC0 29
WC0 C31 C28 C 0 1 Y N N N N N -8.681 10.939 64.508 6.915 -1.904 -3.847 C31 WC0 30
WC0 C32 C29 C 0 1 Y N N N N N -8.076 11.838 65.385 6.444 -0.686 -4.304 C32 WC0 31
WC0 C33 C30 C 0 1 Y N N N N N -8.775 12.946 65.861 5.230 -0.195 -3.858 C33 WC0 32
WC0 C7 C31 C 0 1 Y N N N N N -13.295 14.345 72.439 2.385 4.559 1.559 C7 WC0 33
WC0 C8 C32 C 0 1 Y N N N N N -12.055 14.741 71.945 3.022 3.372 1.874 C8 WC0 34
WC0 C9 C33 C 0 1 Y N N N N N -11.153 13.781 71.508 2.289 2.207 2.006 C9 WC0 35
WC0 CL1 CL1 CL 0 0 N N N N N N -13.199 10.361 72.113 -1.438 3.436 1.261 CL1 WC0 36
WC0 CL2 CL2 CL 0 0 N N N N N N -14.436 15.520 72.998 3.304 6.023 1.399 CL2 WC0 37
WC0 F1 F1 F 0 1 N N N N N N -10.340 7.079 74.757 2.404 -4.659 2.668 F1 WC0 38
WC0 N1 N1 N 0 1 N N N N N N -10.393 12.425 68.883 1.239 -0.098 0.045 N1 WC0 39
WC0 N2 N2 N 0 1 N N N N N N -10.599 8.814 68.812 -2.220 -0.744 1.159 N2 WC0 40
WC0 N3 N3 N 0 1 N N N N N N -9.749 5.269 65.621 -6.076 -0.426 -0.440 N3 WC0 41
WC0 N4 N4 N 0 1 N N N N N N -8.448 3.388 62.767 -8.098 1.147 -3.156 N4 WC0 42
WC0 N5 N5 N 0 1 N N N N N N -11.743 15.460 67.936 4.188 1.548 -1.385 N5 WC0 43
WC0 N6 N6 N 0 1 N N N N N N -13.175 12.740 63.863 3.562 -3.507 -0.807 N6 WC0 44
WC0 O1 O3 O 0 1 N N N N N N -12.344 12.619 67.900 1.633 1.930 -0.763 O1 WC0 45
WC0 H1 H1 H 0 1 N N N N N N -11.802 10.968 69.391 -0.515 1.042 -0.105 H1 WC0 46
WC0 H2 H2 H 0 1 N N N N N N -10.638 10.384 71.556 -0.852 1.182 2.381 H2 WC0 47
WC0 H3 H3 H 0 1 N N N N N N -9.439 11.676 71.209 0.655 0.261 2.602 H3 WC0 48
WC0 H4 H4 H 0 1 N N N N N N -14.599 12.703 72.874 0.516 5.505 1.124 H4 WC0 49
WC0 H5 H5 H 0 1 N N N N N N -8.872 7.604 68.544 -2.888 -2.604 0.459 H5 WC0 50
WC0 H6 H6 H 0 1 N N N N N N -11.622 6.287 68.787 -2.953 -1.898 3.426 H6 WC0 51
WC0 H7 H7 H 0 1 N N N N N N -10.021 5.472 68.818 -3.545 -3.430 2.739 H7 WC0 52
WC0 H8 H8 H 0 1 N N N N N N -8.722 5.400 70.879 -1.997 -5.048 1.797 H8 WC0 53
WC0 H9 H9 H 0 1 N N N N N N -8.619 5.700 73.330 0.295 -5.945 1.820 H9 WC0 54
WC0 H10 H10 H 0 1 N N N N N N -12.170 8.086 73.192 1.710 -2.278 3.486 H10 WC0 55
WC0 H11 H11 H 0 1 N N N N N N -12.277 7.777 70.748 -0.582 -1.380 3.452 H11 WC0 56
WC0 H12 H12 H 0 1 N N N N N N -10.007 8.365 66.344 -5.206 -2.323 1.387 H12 WC0 57
WC0 H13 H13 H 0 1 N N N N N N -11.245 7.108 66.682 -4.738 -0.709 1.973 H13 WC0 58
WC0 H14 H14 H 0 1 N N N N N N -8.638 3.509 65.870 -6.173 -0.622 -2.526 H14 WC0 59
WC0 H15 H15 H 0 1 N N N N N N -7.890 4.748 64.806 -5.705 0.993 -1.939 H15 WC0 60
WC0 H16 H16 H 0 1 N N N N N N -10.270 4.163 63.477 -8.468 -0.274 -1.653 H16 WC0 61
WC0 H17 H17 H 0 1 N N N N N N -9.799 2.567 64.154 -8.000 1.340 -1.067 H17 WC0 62
WC0 H18 H18 H 0 1 N N N N N N -7.000 4.669 63.596 -8.144 0.572 -5.177 H18 WC0 63
WC0 H19 H19 H 0 1 N N N N N N -6.792 2.927 63.979 -7.018 -0.353 -4.155 H19 WC0 64
WC0 H20 H20 H 0 1 N N N N N N -6.394 3.539 62.338 -8.770 -0.640 -4.033 H20 WC0 65
WC0 H21 H21 H 0 1 N N N N N N -9.565 1.824 61.912 -10.187 1.071 -2.943 H21 WC0 66
WC0 H22 H22 H 0 1 N N N N N N -7.852 1.923 61.381 -9.434 2.606 -2.450 H22 WC0 67
WC0 H23 H23 H 0 1 N N N N N N -8.250 1.310 63.022 -9.596 2.208 -4.177 H23 WC0 68
WC0 H24 H24 H 0 1 N N N N N N -9.825 14.656 67.771 3.843 -0.294 -0.435 H24 WC0 69
WC0 H25 H25 H 0 1 N N N N N N -10.510 15.301 65.517 2.463 -1.215 -2.322 H25 WC0 70
WC0 H26 H26 H 0 1 N N N N N N -11.971 14.260 65.617 2.745 0.295 -3.220 H26 WC0 71
WC0 H27 H27 H 0 1 N N N N N N -10.468 10.456 63.414 6.545 -3.589 -2.588 H27 WC0 72
WC0 H28 H28 H 0 1 N N N N N N -8.132 10.081 64.150 7.864 -2.281 -4.199 H28 WC0 73
WC0 H29 H29 H 0 1 N N N N N N -7.056 11.674 65.699 7.027 -0.115 -5.011 H29 WC0 74
WC0 H30 H30 H 0 1 N N N N N N -8.307 13.637 66.547 4.866 0.754 -4.222 H30 WC0 75
WC0 H31 H31 H 0 1 N N N N N N -11.797 15.789 71.902 4.092 3.356 2.021 H31 WC0 76
WC0 H32 H32 H 0 1 N N N N N N -10.187 14.080 71.129 2.787 1.282 2.256 H32 WC0 77
WC0 H33 H33 H 0 1 N N N N N N -9.479 12.809 69.015 1.544 -1.010 0.169 H33 WC0 78
WC0 H34 H34 H 0 1 N N N N N N -11.587 8.811 68.966 -2.545 0.133 1.417 H34 WC0 79
WC0 H35 H35 H 0 1 N N N N N N -10.736 5.174 65.494 -6.778 -0.466 0.228 H35 WC0 80
WC0 H37 H37 H 0 1 N N N N N N -11.709 15.505 68.934 3.755 2.172 -2.048 H37 WC0 81
WC0 H38 H38 H 0 1 N N N N N N -11.459 16.339 67.553 4.387 2.024 -0.517 H38 WC0 82
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WC0 C24 N4 SING N N 1
WC0 N4 C23 SING N N 2
WC0 N4 C22 SING N N 3
WC0 C22 C21 SING N N 4
WC0 N6 C29 TRIP N N 5
WC0 C30 C31 DOUB Y N 6
WC0 C30 C28 SING Y N 7
WC0 C29 C28 SING N N 8
WC0 C31 C32 SING Y N 9
WC0 C28 C27 DOUB Y N 10
WC0 C21 N3 SING N N 11
WC0 C32 C33 DOUB Y N 12
WC0 C27 C33 SING Y N 13
WC0 C27 C26 SING N N 14
WC0 N3 C20 SING N N 15
WC0 C26 C25 SING N N 16
WC0 C20 O2 DOUB N N 17
WC0 C20 C19 SING N N 18
WC0 C19 C11 SING N N 19
WC0 C25 N5 SING N N 20
WC0 C25 C1 SING N N 21
WC0 O1 C1 DOUB N N 22
WC0 C1 N1 SING N N 23
WC0 C11 N2 SING N N 24
WC0 C11 C12 SING N N 25
WC0 N2 C10 SING N N 26
WC0 O3 C10 DOUB N N 27
WC0 N1 C2 SING N N 28
WC0 C10 C2 SING N N 29
WC0 C12 C13 SING N N 30
WC0 C2 C3 SING N N 31
WC0 C13 C18 DOUB Y N 32
WC0 C13 C14 SING Y N 33
WC0 C3 C4 SING N N 34
WC0 C18 C17 SING Y N 35
WC0 C14 C15 DOUB Y N 36
WC0 C9 C4 DOUB Y N 37
WC0 C9 C8 SING Y N 38
WC0 C4 C5 SING Y N 39
WC0 C8 C7 DOUB Y N 40
WC0 C5 CL1 SING N N 41
WC0 C5 C6 DOUB Y N 42
WC0 C7 C6 SING Y N 43
WC0 C7 CL2 SING N N 44
WC0 C17 C16 DOUB Y N 45
WC0 C15 C16 SING Y N 46
WC0 C16 F1 SING N N 47
WC0 C2 H1 SING N N 48
WC0 C3 H2 SING N N 49
WC0 C3 H3 SING N N 50
WC0 C6 H4 SING N N 51
WC0 C11 H5 SING N N 52
WC0 C12 H6 SING N N 53
WC0 C12 H7 SING N N 54
WC0 C14 H8 SING N N 55
WC0 C15 H9 SING N N 56
WC0 C17 H10 SING N N 57
WC0 C18 H11 SING N N 58
WC0 C19 H12 SING N N 59
WC0 C19 H13 SING N N 60
WC0 C21 H14 SING N N 61
WC0 C21 H15 SING N N 62
WC0 C22 H16 SING N N 63
WC0 C22 H17 SING N N 64
WC0 C23 H18 SING N N 65
WC0 C23 H19 SING N N 66
WC0 C23 H20 SING N N 67
WC0 C24 H21 SING N N 68
WC0 C24 H22 SING N N 69
WC0 C24 H23 SING N N 70
WC0 C25 H24 SING N N 71
WC0 C26 H25 SING N N 72
WC0 C26 H26 SING N N 73
WC0 C30 H27 SING N N 74
WC0 C31 H28 SING N N 75
WC0 C32 H29 SING N N 76
WC0 C33 H30 SING N N 77
WC0 C8 H31 SING N N 78
WC0 C9 H32 SING N N 79
WC0 N1 H33 SING N N 80
WC0 N2 H34 SING N N 81
WC0 N3 H35 SING N N 82
WC0 N5 H37 SING N N 83
WC0 N5 H38 SING N N 84
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WC0 SMILES ACDLabs 12.01 "Clc1cc(Cl)ccc1CC(NC(=O)C(N)Cc1ccccc1C#N)C(=O)NC(Cc1ccc(F)cc1)CC(=O)NCCN(C)C"
WC0 InChI InChI 1.06 "InChI=1S/C33H37Cl2FN6O3/c1-42(2)14-13-39-31(43)19-27(15-21-7-11-26(36)12-8-21)40-33(45)30(17-23-9-10-25(34)18-28(23)35)41-32(44)29(38)16-22-5-3-4-6-24(22)20-37/h3-12,18,27,29-30H,13-17,19,38H2,1-2H3,(H,39,43)(H,40,45)(H,41,44)/t27-,29+,30+/m0/s1"
WC0 InChIKey InChI 1.06 NNAGTYPHQJODGQ-GNSPLJBXSA-N
WC0 SMILES_CANONICAL CACTVS 3.385 "CN(C)CCNC(=O)C[C@H](Cc1ccc(F)cc1)NC(=O)[C@@H](Cc2ccc(Cl)cc2Cl)NC(=O)[C@H](N)Cc3ccccc3C#N"
WC0 SMILES CACTVS 3.385 "CN(C)CCNC(=O)C[CH](Cc1ccc(F)cc1)NC(=O)[CH](Cc2ccc(Cl)cc2Cl)NC(=O)[CH](N)Cc3ccccc3C#N"
WC0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)CCNC(=O)C[C@H](Cc1ccc(cc1)F)NC(=O)[C@@H](Cc2ccc(cc2Cl)Cl)NC(=O)[C@@H](Cc3ccccc3C#N)N"
WC0 SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)CCNC(=O)CC(Cc1ccc(cc1)F)NC(=O)C(Cc2ccc(cc2Cl)Cl)NC(=O)C(Cc3ccccc3C#N)N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WC0 "SYSTEMATIC NAME" ACDLabs 12.01 "2-cyano-D-phenylalanyl-2,4-dichloro-N-[(2S)-4-{[2-(dimethylamino)ethyl]amino}-1-(4-fluorophenyl)-4-oxobutan-2-yl]-D-phenylalaninamide"
WC0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-[[(2~{R})-2-[[(2~{R})-2-azanyl-3-(2-cyanophenyl)propanoyl]amino]-3-(2,4-dichlorophenyl)propanoyl]amino]-~{N}-[2-(dimethylamino)ethyl]-4-(4-fluorophenyl)butanamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WC0 "Create component" 2023-09-29 RCSB
WC0 "Initial release" 2024-12-25 RCSB
#