data_WC4 # _chem_comp.id WC4 _chem_comp.name "(1S)-1,4-anhydro-1-(3-methoxynaphthalen-2-yl)-5-O-phosphono-D-ribitol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H19 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-12 _chem_comp.pdbx_modified_date 2021-06-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 370.291 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WC4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KEF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WC4 C01 C1 C 0 1 N N N 170.003 -5.635 51.085 4.457 2.611 1.579 C01 WC4 1 WC4 C03 C2 C 0 1 Y N N 170.083 -3.291 50.694 3.033 0.923 0.701 C03 WC4 2 WC4 C04 C3 C 0 1 Y N N 169.027 -2.346 51.268 1.778 0.450 0.304 C04 WC4 3 WC4 C05 C4 C 0 1 N N S 167.613 -2.817 51.289 0.573 1.346 0.431 C05 WC4 4 WC4 C07 C5 C 0 1 N N R 166.355 -1.569 49.661 -1.661 1.299 -0.178 C07 WC4 5 WC4 C08 C6 C 0 1 N N N 167.190 -0.459 49.008 -2.787 0.370 -0.635 C08 WC4 6 WC4 C14 C7 C 0 1 N N S 165.941 -1.193 51.173 -0.933 1.916 -1.399 C14 WC4 7 WC4 C16 C8 C 0 1 N N R 166.810 -2.096 52.101 0.460 2.250 -0.812 C16 WC4 8 WC4 C18 C9 C 0 1 Y N N 169.430 -0.957 51.787 1.630 -0.807 -0.195 C18 WC4 9 WC4 C19 C10 C 0 1 Y N N 170.923 -0.504 51.733 2.752 -1.645 -0.315 C19 WC4 10 WC4 C20 C11 C 0 1 Y N N 171.970 -1.450 51.162 4.025 -1.169 0.087 C20 WC4 11 WC4 C21 C12 C 0 1 Y N N 173.478 -0.995 51.111 5.145 -2.009 -0.035 C21 WC4 12 WC4 C22 C13 C 0 1 Y N N 173.879 0.380 51.628 4.993 -3.266 -0.535 C22 WC4 13 WC4 C23 C14 C 0 1 Y N N 172.813 1.344 52.209 3.741 -3.734 -0.930 C23 WC4 14 WC4 C24 C15 C 0 1 Y N N 171.330 0.897 52.260 2.635 -2.949 -0.827 C24 WC4 15 WC4 C25 C16 C 0 1 Y N N 171.573 -2.835 50.640 4.144 0.134 0.598 C25 WC4 16 WC4 O02 O1 O 0 1 N N N 169.697 -4.587 50.210 3.150 2.185 1.190 O02 WC4 17 WC4 O06 O2 O 0 1 N N N 166.999 -2.716 49.747 -0.623 0.551 0.490 O06 WC4 18 WC4 O15 O3 O 0 1 N N N 164.650 -1.433 51.380 -1.596 3.101 -1.844 O15 WC4 19 WC4 O17 O4 O 0 1 N N N 165.945 -3.014 52.870 0.527 3.628 -0.436 O17 WC4 20 WC4 "O5'" O5 O 0 1 N N N 168.475 -0.906 48.427 -3.514 -0.093 0.505 "O5'" WC4 21 WC4 OP1 O6 O 0 1 N N N 167.311 -1.177 46.101 -5.424 -1.296 1.854 OP1 WC4 22 WC4 OP2 O7 O 0 1 N N N 168.316 -3.159 47.191 -5.782 -0.516 -0.520 OP2 WC4 23 WC4 P P1 P 0 1 N N N 168.469 -1.670 46.952 -4.772 -1.092 0.396 P WC4 24 WC4 H1 H1 H 0 1 N N N 169.677 -6.589 50.644 4.410 3.635 1.951 H1 WC4 25 WC4 H2 H2 H 0 1 N N N 171.089 -5.663 51.258 4.834 1.956 2.365 H2 WC4 26 WC4 H3 H3 H 0 1 N N N 169.483 -5.477 52.042 5.125 2.568 0.719 H3 WC4 27 WC4 H4 H4 H 0 1 N N N 167.598 -3.881 51.568 0.659 1.958 1.328 H4 WC4 28 WC4 H6 H6 H 0 1 N N N 165.423 -1.678 49.086 -2.051 2.083 0.472 H6 WC4 29 WC4 H7 H7 H 0 1 N N N 166.590 -0.008 48.204 -3.459 0.913 -1.299 H7 WC4 30 WC4 H8 H8 H 0 1 N N N 167.407 0.301 49.773 -2.362 -0.482 -1.165 H8 WC4 31 WC4 H9 H9 H 0 1 N N N 166.205 -0.140 51.351 -0.849 1.191 -2.209 H9 WC4 32 WC4 H10 H10 H 0 1 N N N 167.384 -1.456 52.787 1.245 2.012 -1.530 H10 WC4 33 WC4 H11 H11 H 0 1 N N N 168.679 -0.293 52.190 0.655 -1.158 -0.497 H11 WC4 34 WC4 H12 H12 H 0 1 N N N 174.228 -1.660 50.709 6.121 -1.659 0.267 H12 WC4 35 WC4 H13 H13 H 0 1 N N N 174.914 0.686 51.590 5.856 -3.909 -0.628 H13 WC4 36 WC4 H14 H14 H 0 1 N N N 173.101 2.318 52.575 3.648 -4.736 -1.324 H14 WC4 37 WC4 H15 H15 H 0 1 N N N 170.580 1.561 52.663 1.671 -3.326 -1.137 H15 WC4 38 WC4 H16 H16 H 0 1 N N N 172.325 -3.495 50.235 5.108 0.510 0.907 H16 WC4 39 WC4 H18 H18 H 0 1 N N N 164.425 -1.206 52.275 -1.178 3.523 -2.607 H18 WC4 40 WC4 H19 H19 H 0 1 N N N 165.378 -2.511 53.443 0.460 4.242 -1.179 H19 WC4 41 WC4 H20 H20 H 0 1 N N N 166.735 -1.904 45.898 -6.188 -1.887 1.864 H20 WC4 42 WC4 OP3 OP3 O 0 1 N N N 170.017 -1.725 46.493 -4.279 -2.515 -0.175 OP3 WC4 43 WC4 H5 H5 H 0 1 N N N 170.323 -2.624 46.517 -3.615 -2.951 0.377 H5 WC4 44 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WC4 C01 O02 SING N N 1 WC4 C03 C04 DOUB Y N 2 WC4 C03 C25 SING Y N 3 WC4 C03 O02 SING N N 4 WC4 C04 C05 SING N N 5 WC4 C04 C18 SING Y N 6 WC4 C05 C16 SING N N 7 WC4 C07 C08 SING N N 8 WC4 C07 C14 SING N N 9 WC4 C07 O06 SING N N 10 WC4 C08 "O5'" SING N N 11 WC4 C14 C16 SING N N 12 WC4 C14 O15 SING N N 13 WC4 C16 O17 SING N N 14 WC4 C18 C19 DOUB Y N 15 WC4 C19 C20 SING Y N 16 WC4 C19 C24 SING Y N 17 WC4 C20 C21 SING Y N 18 WC4 C20 C25 DOUB Y N 19 WC4 C21 C22 DOUB Y N 20 WC4 C22 C23 SING Y N 21 WC4 C23 C24 DOUB Y N 22 WC4 "O5'" P SING N N 23 WC4 OP1 P SING N N 24 WC4 OP2 P DOUB N N 25 WC4 C01 H1 SING N N 26 WC4 C01 H2 SING N N 27 WC4 C01 H3 SING N N 28 WC4 C05 H4 SING N N 29 WC4 C07 H6 SING N N 30 WC4 C08 H7 SING N N 31 WC4 C08 H8 SING N N 32 WC4 C14 H9 SING N N 33 WC4 C16 H10 SING N N 34 WC4 C18 H11 SING N N 35 WC4 C21 H12 SING N N 36 WC4 C22 H13 SING N N 37 WC4 C23 H14 SING N N 38 WC4 C24 H15 SING N N 39 WC4 C25 H16 SING N N 40 WC4 O15 H18 SING N N 41 WC4 O17 H19 SING N N 42 WC4 OP1 H20 SING N N 43 WC4 C05 O06 SING N N 44 WC4 P OP3 SING N N 45 WC4 OP3 H5 SING N N 46 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WC4 SMILES ACDLabs 12.01 "COc3c(C1C(C(C(COP(O)(=O)O)O1)O)O)cc2c(cccc2)c3" WC4 InChI InChI 1.03 "InChI=1S/C16H19O8P/c1-22-12-7-10-5-3-2-4-9(10)6-11(12)16-15(18)14(17)13(24-16)8-23-25(19,20)21/h2-7,13-18H,8H2,1H3,(H2,19,20,21)/t13-,14-,15-,16+/m1/s1" WC4 InChIKey InChI 1.03 JKJYMBPWCSVIAM-FPCVCCKLSA-N WC4 SMILES_CANONICAL CACTVS 3.385 "COc1cc2ccccc2cc1[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O" WC4 SMILES CACTVS 3.385 "COc1cc2ccccc2cc1[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O" WC4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc2ccccc2cc1C3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O" WC4 SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc2ccccc2cc1C3C(C(C(O3)COP(=O)(O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WC4 "SYSTEMATIC NAME" ACDLabs 12.01 "(1S)-1,4-anhydro-1-(3-methoxynaphthalen-2-yl)-5-O-phosphono-D-ribitol" WC4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R})-5-(3-methoxynaphthalen-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WC4 "Create component" 2020-10-12 RCSB WC4 "Initial release" 2021-06-23 RCSB ##