data_WC5 # _chem_comp.id WC5 _chem_comp.name "PROTOPORPHYRIN(CF3)2 CONTAINING FE" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H26 F6 Fe N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-22 _chem_comp.pdbx_modified_date 2024-06-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 700.409 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WC5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 8WF5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WC5 C4 C1 C 0 1 Y N N N N N -4.091 4.018 14.196 ? ? ? C4 WC5 1 WC5 C2 C2 C 0 1 Y N N N N N -1.897 3.741 14.108 ? ? ? C2 WC5 2 WC5 C1 C3 C 0 1 N N N N N N -0.657 3.090 13.847 ? ? ? C1 WC5 3 WC5 C3 C4 C 0 1 Y N N N N N -3.145 3.047 13.803 ? ? ? C3 WC5 4 WC5 C5 C5 C 0 1 Y N N N N N -3.314 5.147 14.693 ? ? ? C5 WC5 5 WC5 C14 C6 C 0 1 N N N N N N 3.170 8.434 16.040 ? ? ? C14 WC5 6 WC5 N1 N1 N 0 1 Y N N N N N -2.006 4.965 14.620 ? ? ? N1 WC5 7 WC5 C12 C7 C 0 1 N N N N N N 0.914 8.837 16.100 ? ? ? C12 WC5 8 WC5 O1 O1 O 0 1 N N N N N N -1.430 12.279 14.731 ? ? ? O1 WC5 9 WC5 C10 C8 C 0 1 N N N N N N -1.656 8.900 16.182 ? ? ? C10 WC5 10 WC5 C8 C9 C 0 1 N N N N N N -3.964 8.712 16.228 ? ? ? C8 WC5 11 WC5 C6 C10 C 0 1 N N N N N N -3.911 6.354 15.219 ? ? ? C6 WC5 12 WC5 C7 C11 C 0 1 N N N N N N -3.222 7.549 15.693 ? ? ? C7 WC5 13 WC5 C9 C12 C 0 1 N N N N N N -2.878 9.638 16.504 ? ? ? C9 WC5 14 WC5 C11 C13 C 0 1 N N N N N N -0.342 9.494 16.342 ? ? ? C11 WC5 15 WC5 C13 C14 C 0 1 N N N N N N 2.210 9.476 16.401 ? ? ? C13 WC5 16 WC5 O2 O2 O 0 1 N N N N N N -3.047 11.587 13.478 ? ? ? O2 WC5 17 WC5 C15 C15 C 0 1 N N N N N N 2.322 7.333 15.580 ? ? ? C15 WC5 18 WC5 F3 F1 F 0 1 N N N N N N -6.105 4.340 15.138 ? ? ? F3 WC5 19 WC5 F1 F2 F 0 1 N N N N N N -5.920 2.599 13.989 ? ? ? F1 WC5 20 WC5 F2 F3 F 0 1 N N N N N N -5.914 4.435 13.020 ? ? ? F2 WC5 21 WC5 C16 C16 C 0 1 N N N N N N 2.897 6.086 15.165 ? ? ? C16 WC5 22 WC5 C17 C17 C 0 1 N N N N N N 2.203 4.881 14.727 ? ? ? C17 WC5 23 WC5 C18 C18 C 0 1 N N N N N N 2.889 3.613 14.387 ? ? ? C18 WC5 24 WC5 C19 C19 C 0 1 N N N N N N 1.824 2.733 13.958 ? ? ? C19 WC5 25 WC5 C20 C20 C 0 1 N N N N N N 0.671 3.599 14.126 ? ? ? C20 WC5 26 WC5 C21 C21 C 0 1 N N N N N N -3.371 1.700 13.232 ? ? ? C21 WC5 27 WC5 C22 C22 C 0 1 N N N N N N -5.557 3.842 14.107 ? ? ? C22 WC5 28 WC5 C23 C23 C 0 1 N N N N N N -5.465 8.879 16.320 ? ? ? C23 WC5 29 WC5 C24 C24 C 0 1 N N N N N N 4.671 8.497 16.107 ? ? ? C24 WC5 30 WC5 C25 C25 C 0 1 N N N N N N 4.311 3.248 14.513 ? ? ? C25 WC5 31 WC5 C26 C26 C 0 1 N N N N N N 1.828 1.293 13.515 ? ? ? C26 WC5 32 WC5 C27 C27 C 0 1 N N N N N N -2.966 11.021 16.998 ? ? ? C27 WC5 33 WC5 C28 C28 C 0 1 N N N N N N -3.507 11.844 15.817 ? ? ? C28 WC5 34 WC5 C29 C29 C 0 1 N N N N N N -2.592 11.876 14.591 ? ? ? C29 WC5 35 WC5 C30 C30 C 0 1 N N N N N N 2.542 10.798 16.971 ? ? ? C30 WC5 36 WC5 C31 C31 C 0 1 N N N N N N 2.454 10.510 18.483 ? ? ? C31 WC5 37 WC5 C32 C32 C 0 1 N N N N N N 2.755 11.713 19.386 ? ? ? C32 WC5 38 WC5 N2 N2 N 0 1 N N N N N N -1.877 7.650 15.719 ? ? ? N2 WC5 39 WC5 N3 N3 N 0 1 N N R N N N 1.011 7.579 15.569 ? ? ? N3 WC5 40 WC5 N4 N4 N 0 1 N N N N N N 0.903 4.835 14.550 ? ? ? N4 WC5 41 WC5 O3 O3 O 0 1 N N N N N N 1.814 12.283 19.992 ? ? ? O3 WC5 42 WC5 O4 O4 O 0 1 N N N N N N 3.929 12.066 19.543 ? ? ? O4 WC5 43 WC5 F4 F4 F 0 1 N N N N N N 5.107 4.216 14.722 ? ? ? F4 WC5 44 WC5 F5 F5 F 0 1 N N N N N N 4.298 2.548 15.670 ? ? ? F5 WC5 45 WC5 F6 F6 F 0 1 N N N N N N 4.728 2.439 13.640 ? ? ? F6 WC5 46 WC5 FE1 FE1 FE 0 0 N N N N N N -0.494 6.281 15.071 ? ? ? FE1 WC5 47 WC5 H1 H1 H 0 1 N N N N N N -0.713 2.112 13.392 ? ? ? H1 WC5 48 WC5 H2 H2 H 0 1 N N N N N N -1.003 12.316 13.883 ? ? ? H2 WC5 49 WC5 H3 H3 H 0 1 N N N N N N -4.990 6.373 15.266 ? ? ? H3 WC5 50 WC5 H4 H4 H 0 1 N N N N N N -0.304 10.522 16.672 ? ? ? H4 WC5 51 WC5 H5 H5 H 0 1 N N N N N N 3.976 6.033 15.179 ? ? ? H5 WC5 52 WC5 H6 H6 H 0 1 N N N N N N -3.440 0.963 14.046 ? ? ? H6 WC5 53 WC5 H7 H7 H 0 1 N N N N N N -4.308 1.699 12.656 ? ? ? H7 WC5 54 WC5 H8 H8 H 0 1 N N N N N N -2.533 1.437 12.569 ? ? ? H8 WC5 55 WC5 H9 H9 H 0 1 N N N N N N -5.699 9.857 16.766 ? ? ? H9 WC5 56 WC5 H10 H10 H 0 1 N N N N N N -5.903 8.821 15.312 ? ? ? H10 WC5 57 WC5 H11 H11 H 0 1 N N N N N N -5.885 8.080 16.949 ? ? ? H11 WC5 58 WC5 H12 H12 H 0 1 N N N N N N 4.980 9.475 16.503 ? ? ? H12 WC5 59 WC5 H13 H13 H 0 1 N N N N N N 5.042 7.700 16.768 ? ? ? H13 WC5 60 WC5 H14 H14 H 0 1 N N N N N N 5.089 8.361 15.099 ? ? ? H14 WC5 61 WC5 H15 H15 H 0 1 N N N N N N 2.862 0.920 13.489 ? ? ? H15 WC5 62 WC5 H16 H16 H 0 1 N N N N N N 1.239 0.690 14.222 ? ? ? H16 WC5 63 WC5 H17 H17 H 0 1 N N N N N N 1.385 1.217 12.511 ? ? ? H17 WC5 64 WC5 H18 H18 H 0 1 N N N N N N -1.973 11.386 17.298 ? ? ? H18 WC5 65 WC5 H19 H19 H 0 1 N N N N N N -3.653 11.080 17.855 ? ? ? H19 WC5 66 WC5 H20 H20 H 0 1 N N N N N N -3.658 12.878 16.160 ? ? ? H20 WC5 67 WC5 H21 H21 H 0 1 N N N N N N -4.473 11.414 15.513 ? ? ? H21 WC5 68 WC5 H22 H22 H 0 1 N N N N N N 3.554 11.118 16.681 ? ? ? H22 WC5 69 WC5 H23 H23 H 0 1 N N N N N N 1.813 11.563 16.664 ? ? ? H23 WC5 70 WC5 H24 H24 H 0 1 N N N N N N 1.435 10.161 18.706 ? ? ? H24 WC5 71 WC5 H25 H25 H 0 1 N N N N N N 3.175 9.714 18.722 ? ? ? H25 WC5 72 WC5 H26 H26 H 0 1 N N N N N N 2.164 12.974 20.542 ? ? ? H26 WC5 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WC5 F2 C22 SING N N 1 WC5 C21 C3 SING N N 2 WC5 O2 C29 DOUB N N 3 WC5 C26 C19 SING N N 4 WC5 F6 C25 SING N N 5 WC5 C3 C2 DOUB Y N 6 WC5 C3 C4 SING Y N 7 WC5 C1 C2 SING N N 8 WC5 C1 C20 DOUB N N 9 WC5 C19 C20 SING N N 10 WC5 C19 C18 DOUB N N 11 WC5 F1 C22 SING N N 12 WC5 C22 C4 SING N N 13 WC5 C22 F3 SING N N 14 WC5 C2 N1 SING Y N 15 WC5 C20 N4 SING N N 16 WC5 C4 C5 DOUB Y N 17 WC5 C18 C25 SING N N 18 WC5 C18 C17 SING N N 19 WC5 C25 F4 SING N N 20 WC5 C25 F5 SING N N 21 WC5 N4 C17 DOUB N N 22 WC5 N4 FE1 SING N N 23 WC5 C29 O1 SING N N 24 WC5 C29 C28 SING N N 25 WC5 N1 C5 SING Y N 26 WC5 N1 FE1 SING N N 27 WC5 C5 C6 SING N N 28 WC5 C17 C16 SING N N 29 WC5 FE1 N3 SING N N 30 WC5 FE1 N2 SING N N 31 WC5 C16 C15 DOUB N N 32 WC5 C6 C7 DOUB N N 33 WC5 N3 C15 SING N N 34 WC5 N3 C12 SING N N 35 WC5 C15 C14 SING N N 36 WC5 C7 N2 SING N N 37 WC5 C7 C8 SING N N 38 WC5 N2 C10 DOUB N N 39 WC5 C28 C27 SING N N 40 WC5 C14 C24 SING N N 41 WC5 C14 C13 DOUB N N 42 WC5 C12 C11 DOUB N N 43 WC5 C12 C13 SING N N 44 WC5 C10 C11 SING N N 45 WC5 C10 C9 SING N N 46 WC5 C8 C23 SING N N 47 WC5 C8 C9 DOUB N N 48 WC5 C13 C30 SING N N 49 WC5 C9 C27 SING N N 50 WC5 C30 C31 SING N N 51 WC5 C31 C32 SING N N 52 WC5 C32 O4 DOUB N N 53 WC5 C32 O3 SING N N 54 WC5 C1 H1 SING N N 55 WC5 O1 H2 SING N N 56 WC5 C6 H3 SING N N 57 WC5 C11 H4 SING N N 58 WC5 C16 H5 SING N N 59 WC5 C21 H6 SING N N 60 WC5 C21 H7 SING N N 61 WC5 C21 H8 SING N N 62 WC5 C23 H9 SING N N 63 WC5 C23 H10 SING N N 64 WC5 C23 H11 SING N N 65 WC5 C24 H12 SING N N 66 WC5 C24 H13 SING N N 67 WC5 C24 H14 SING N N 68 WC5 C26 H15 SING N N 69 WC5 C26 H16 SING N N 70 WC5 C26 H17 SING N N 71 WC5 C27 H18 SING N N 72 WC5 C27 H19 SING N N 73 WC5 C28 H20 SING N N 74 WC5 C28 H21 SING N N 75 WC5 C30 H22 SING N N 76 WC5 C30 H23 SING N N 77 WC5 C31 H24 SING N N 78 WC5 C31 H25 SING N N 79 WC5 O3 H26 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WC5 InChI InChI 1.06 "InChI=1S/C32H28F6N4O4.Fe/c1-13-17(5-7-27(43)44)23-12-24-18(6-8-28(45)46)14(2)20(40-24)11-26-30(32(36,37)38)16(4)22(42-26)9-21-15(3)29(31(33,34)35)25(41-21)10-19(13)39-23;/h9-12H,5-8H2,1-4H3,(H4,39,40,41,42,43,44,45,46);/q;+2/p-2/b19-10-,20-11-,21-9-,22-9-,23-12-,24-12-,25-10-,26-11-;" WC5 InChIKey InChI 1.06 JUYXUDVNSZZNQY-NYFTZVNFSA-L WC5 SMILES_CANONICAL CACTVS 3.385 "CC1=C(CCC(O)=O)C2=NC1=Cc3n4[Fe][N@@]5C(=CC6=NC(=Cc4c(C)c3C(F)(F)F)C(=C6C(F)(F)F)C)C(=C(CCC(O)=O)C5=C2)C" WC5 SMILES CACTVS 3.385 "CC1=C(CCC(O)=O)C2=NC1=Cc3n4[Fe][N]5C(=CC6=NC(=Cc4c(C)c3C(F)(F)F)C(=C6C(F)(F)F)C)C(=C(CCC(O)=O)C5=C2)C" WC5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c2n3c(c1C(F)(F)F)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)CCC(=O)O)C(=C(C7=C2)C)C(F)(F)F)CCC(=O)O)C" WC5 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c2n3c(c1C(F)(F)F)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)CCC(=O)O)C(=C(C7=C2)C)C(F)(F)F)CCC(=O)O)C" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WC5 "Create component" 2023-09-22 PDBJ WC5 "Initial release" 2024-06-12 RCSB #