data_WCZ
#
_chem_comp.id WCZ
_chem_comp.name "2-cyano-D-phenylalanyl-2,4-dichloro-N-[(2S)-1-(4-fluorophenyl)-4-{[3-(4-methylpiperazin-1-yl)propyl]amino}-4-oxobutan-2-yl]-D-phenylalaninamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C37 H44 Cl2 F N7 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-10-02
_chem_comp.pdbx_modified_date 2024-12-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 724.695
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code WCZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8UDX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WCZ C1 C1 C 0 1 N N R N N N 10.545 0.725 20.306 -4.031 -1.069 -1.377 C1 WCZ 1
WCZ C2 C2 C 0 1 N N N N N N 10.052 -0.582 20.962 -2.789 -1.162 -0.529 C2 WCZ 2
WCZ C3 C3 C 0 1 N N R N N N 10.444 -2.447 22.400 -1.033 -0.135 0.812 C3 WCZ 3
WCZ C4 C4 C 0 1 N N N N N N 10.723 -2.308 23.922 -1.425 -0.435 2.260 C4 WCZ 4
WCZ C5 C5 C 0 1 Y N N N N N 9.784 -1.182 24.475 -2.062 -1.799 2.336 C5 WCZ 5
WCZ C6 C6 C 0 1 Y N N N N N 8.486 -1.497 24.854 -3.387 -1.964 1.973 C6 WCZ 6
WCZ C7 C7 C 0 1 Y N N N N N 7.645 -0.503 25.333 -3.972 -3.216 2.042 C7 WCZ 7
WCZ C8 C8 C 0 1 Y N N N N N 8.100 0.804 25.434 -3.231 -4.302 2.474 C8 WCZ 8
WCZ C9 C9 C 0 1 Y N N N N N 9.400 1.123 25.054 -1.906 -4.135 2.836 C9 WCZ 9
WCZ C10 C10 C 0 1 Y N N N N N 10.242 0.127 24.572 -1.321 -2.885 2.761 C10 WCZ 10
WCZ C11 C11 C 0 1 N N N N N N 11.221 -3.697 21.919 -0.286 1.173 0.754 C11 WCZ 11
WCZ C18 C12 C 0 1 Y N N N N N 9.912 -5.897 25.502 -2.753 3.426 2.217 C18 WCZ 12
WCZ C19 C13 C 0 1 Y N N N N N 9.800 -6.111 24.132 -1.447 3.118 2.547 C19 WCZ 13
WCZ C20 C14 C 0 1 N N N N N N 11.096 -6.150 19.652 3.071 2.349 1.681 C20 WCZ 14
WCZ C21 C15 C 0 1 N N N N N N 11.765 -7.479 19.157 3.668 1.501 0.588 C21 WCZ 15
WCZ C22 C16 C 0 1 N N N N N N 11.790 -9.368 17.648 5.550 0.331 -0.424 C22 WCZ 16
WCZ C23 C17 C 0 1 N N N N N N 10.725 -10.150 16.871 7.031 0.086 -0.128 C23 WCZ 17
WCZ C25 C18 C 0 1 N N N N N N 9.890 -11.697 14.546 9.618 -2.021 -1.862 C25 WCZ 18
WCZ C26 C19 C 0 1 N N N N N N 8.946 -12.734 13.921 11.076 -2.294 -1.483 C26 WCZ 19
WCZ C27 C20 C 0 1 N N N N N N 8.722 -14.972 13.064 13.264 -1.277 -1.274 C27 WCZ 20
WCZ C29 C21 C 0 1 N N N N N N 11.197 -13.489 15.495 9.826 0.242 -1.029 C29 WCZ 21
WCZ C30 C22 C 0 1 N N N N N N 10.346 0.674 18.755 -3.649 -0.647 -2.796 C30 WCZ 22
WCZ C12 C23 C 0 1 N N S N N N 11.236 -5.988 21.176 1.590 2.594 1.385 C12 WCZ 23
WCZ C13 C24 C 0 1 N N N N N N 10.620 -7.135 21.932 1.014 3.556 2.426 C13 WCZ 24
WCZ C14 C25 C 0 1 Y N N N N N 10.734 -6.896 23.454 -0.410 3.894 2.065 C14 WCZ 25
WCZ C15 C26 C 0 1 Y N N N N N 11.781 -7.474 24.169 -0.677 4.979 1.251 C15 WCZ 26
WCZ C16 C27 C 0 1 Y N N N N N 11.891 -7.264 25.542 -1.982 5.289 0.919 C16 WCZ 27
WCZ C17 C28 C 0 1 Y N N N N N 10.958 -6.476 26.213 -3.022 4.513 1.402 C17 WCZ 28
WCZ C24 C29 C 0 1 N N N N N N 11.403 -11.362 16.222 7.638 -0.775 -1.238 C24 WCZ 29
WCZ C28 C30 C 0 1 N N N N N N 10.252 -14.520 14.873 11.283 -0.031 -0.650 C28 WCZ 30
WCZ C31 C31 C 0 1 Y N N N N N 11.106 -0.492 18.179 -4.899 -0.435 -3.611 C31 WCZ 31
WCZ C32 C32 C 0 1 Y N N N N N 10.508 -1.285 17.203 -5.559 0.795 -3.573 C32 WCZ 32
WCZ C33 C33 C 0 1 N N N N N N 9.106 -0.958 16.758 -5.054 1.857 -2.756 C33 WCZ 33
WCZ C34 C34 C 0 1 Y N N N N N 11.180 -2.368 16.648 -6.713 0.985 -4.335 C34 WCZ 34
WCZ C35 C35 C 0 1 Y N N N N N 12.472 -2.659 17.084 -7.194 -0.042 -5.120 C35 WCZ 35
WCZ C36 C36 C 0 1 Y N N N N N 13.081 -1.866 18.055 -6.536 -1.259 -5.153 C36 WCZ 36
WCZ C37 C37 C 0 1 Y N N N N N 12.402 -0.780 18.603 -5.391 -1.454 -4.401 C37 WCZ 37
WCZ CL1 CL1 CL 0 0 N N N N N N 7.903 -3.121 24.722 -4.316 -0.601 1.432 CL1 WCZ 38
WCZ CL2 CL2 CL 0 0 N N N N N N 7.030 2.022 26.036 -3.964 -5.873 2.561 CL2 WCZ 39
WCZ F1 F1 F 0 1 N N N N N N 11.066 -6.268 27.550 -4.298 4.813 1.074 F1 WCZ 40
WCZ N1 N1 N 0 1 N N N N N N 9.790 1.802 20.863 -4.696 -2.379 -1.417 N1 WCZ 41
WCZ N2 N2 N 0 1 N N N N N N 10.872 -1.247 21.762 -2.240 -0.045 -0.012 N2 WCZ 42
WCZ N3 N3 N 0 1 N N N N N N 10.532 -4.771 21.585 0.864 1.323 1.441 N3 WCZ 43
WCZ N4 N4 N 0 1 N N N N N N 11.202 -8.126 18.143 4.970 1.156 0.638 N4 WCZ 44
WCZ N5 N5 N 0 1 N N N N N N 10.517 -12.211 15.780 9.060 -1.010 -0.954 N5 WCZ 45
WCZ N6 N6 N 0 1 N N N N N N 9.647 -13.995 13.637 11.842 -1.042 -1.558 N6 WCZ 46
WCZ N7 N7 N 0 1 N N N N N N 8.081 -0.725 16.423 -4.653 2.700 -2.108 N7 WCZ 47
WCZ O1 O1 O 0 1 N N N N N N 12.746 -7.906 19.672 2.977 1.129 -0.337 O1 WCZ 48
WCZ O2 O2 O 0 1 N N N N N N 12.418 -3.714 21.889 -0.720 2.090 0.090 O2 WCZ 49
WCZ O3 O3 O 0 1 N N N N N N 8.948 -0.990 20.746 -2.283 -2.243 -0.311 O3 WCZ 50
WCZ H1 H1 H 0 1 N N N N N N 11.616 0.852 20.521 -4.709 -0.331 -0.948 H1 WCZ 51
WCZ H2 H2 H 0 1 N N N N N N 9.367 -2.610 22.246 -0.394 -0.935 0.435 H2 WCZ 52
WCZ H3 H3 H 0 1 N N N N N N 10.508 -3.259 24.431 -0.535 -0.415 2.889 H3 WCZ 53
WCZ H4 H4 H 0 1 N N N N N N 11.775 -2.033 24.087 -2.133 0.317 2.608 H4 WCZ 54
WCZ H5 H5 H 0 1 N N N N N N 6.635 -0.747 25.628 -5.006 -3.345 1.760 H5 WCZ 55
WCZ H6 H6 H 0 1 N N N N N N 9.754 2.140 25.133 -1.328 -4.983 3.172 H6 WCZ 56
WCZ H7 H7 H 0 1 N N N N N N 11.251 0.370 24.273 -0.286 -2.756 3.040 H7 WCZ 57
WCZ H8 H8 H 0 1 N N N N N N 9.187 -5.281 26.014 -3.563 2.817 2.590 H8 WCZ 58
WCZ H9 H9 H 0 1 N N N N N N 8.981 -5.665 23.587 -1.237 2.270 3.182 H9 WCZ 59
WCZ H10 H10 H 0 1 N N N N N N 11.582 -5.297 19.155 3.170 1.834 2.636 H10 WCZ 60
WCZ H11 H11 H 0 1 N N N N N N 10.028 -6.167 19.390 3.595 3.304 1.727 H11 WCZ 61
WCZ H12 H12 H 0 1 N N N N N N 12.145 -9.972 18.496 5.451 0.847 -1.380 H12 WCZ 62
WCZ H13 H13 H 0 1 N N N N N N 12.635 -9.136 16.983 5.027 -0.623 -0.470 H13 WCZ 63
WCZ H14 H14 H 0 1 N N N N N N 10.285 -9.508 16.094 7.555 1.041 -0.082 H14 WCZ 64
WCZ H15 H15 H 0 1 N N N N N N 9.935 -10.488 17.558 7.131 -0.429 0.827 H15 WCZ 65
WCZ H16 H16 H 0 1 N N N N N N 10.679 -11.449 13.821 9.572 -1.654 -2.887 H16 WCZ 66
WCZ H17 H17 H 0 1 N N N N N N 9.316 -10.790 14.788 9.042 -2.942 -1.779 H17 WCZ 67
WCZ H18 H18 H 0 1 N N N N N N 8.542 -12.330 12.981 11.120 -2.687 -0.467 H18 WCZ 68
WCZ H19 H19 H 0 1 N N N N N N 8.120 -12.933 14.620 11.500 -3.023 -2.173 H19 WCZ 69
WCZ H20 H20 H 0 1 N N N N N N 9.260 -15.909 12.857 13.669 -1.980 -2.003 H20 WCZ 70
WCZ H21 H21 H 0 1 N N N N N N 7.907 -15.167 13.776 13.807 -0.335 -1.337 H21 WCZ 71
WCZ H22 H22 H 0 1 N N N N N N 8.303 -14.575 12.127 13.370 -1.692 -0.272 H22 WCZ 72
WCZ H23 H23 H 0 1 N N N N N N 11.595 -13.896 16.436 9.401 0.971 -0.339 H23 WCZ 73
WCZ H24 H24 H 0 1 N N N N N N 12.026 -13.301 14.797 9.781 0.635 -2.045 H24 WCZ 74
WCZ H25 H25 H 0 1 N N N N N N 10.718 1.608 18.309 -3.079 0.281 -2.758 H25 WCZ 75
WCZ H26 H26 H 0 1 N N N N N N 9.276 0.560 18.528 -3.043 -1.427 -3.257 H26 WCZ 76
WCZ H27 H27 H 0 1 N N N N N N 12.303 -5.911 21.432 1.485 3.029 0.391 H27 WCZ 77
WCZ H28 H28 H 0 1 N N N N N N 9.559 -7.223 21.657 1.038 3.085 3.409 H28 WCZ 78
WCZ H29 H29 H 0 1 N N N N N N 11.145 -8.066 21.670 1.610 4.469 2.446 H29 WCZ 79
WCZ H30 H30 H 0 1 N N N N N N 12.509 -8.086 23.658 0.134 5.585 0.875 H30 WCZ 80
WCZ H31 H31 H 0 1 N N N N N N 12.705 -7.715 26.090 -2.191 6.137 0.284 H31 WCZ 81
WCZ H32 H32 H 0 1 N N N N N N 12.039 -11.861 16.968 7.114 -1.730 -1.284 H32 WCZ 82
WCZ H33 H33 H 0 1 N N N N N N 12.024 -11.020 15.381 7.539 -0.259 -2.193 H33 WCZ 83
WCZ H34 H34 H 0 1 N N N N N N 9.454 -14.758 15.592 11.859 0.890 -0.733 H34 WCZ 84
WCZ H35 H35 H 0 1 N N N N N N 10.819 -15.433 14.638 11.330 -0.398 0.375 H35 WCZ 85
WCZ H36 H36 H 0 1 N N N N N N 10.708 -2.975 15.890 -7.229 1.934 -4.310 H36 WCZ 86
WCZ H37 H37 H 0 1 N N N N N N 13.003 -3.502 16.668 -8.087 0.103 -5.710 H37 WCZ 87
WCZ H38 H38 H 0 1 N N N N N N 14.084 -2.094 18.384 -6.916 -2.060 -5.770 H38 WCZ 88
WCZ H39 H39 H 0 1 N N N N N N 12.877 -0.165 19.352 -4.879 -2.404 -4.435 H39 WCZ 89
WCZ H40 H40 H 0 1 N N N N N N 9.924 1.826 21.854 -4.087 -3.081 -1.811 H40 WCZ 90
WCZ H41 H41 H 0 1 N N N N N N 10.098 2.666 20.464 -5.015 -2.651 -0.500 H41 WCZ 91
WCZ H43 H43 H 0 1 N N N N N N 11.798 -0.904 21.919 -2.645 0.819 -0.187 H43 WCZ 92
WCZ H44 H44 H 0 1 N N N N N N 9.532 -4.754 21.611 1.211 0.589 1.972 H44 WCZ 93
WCZ H45 H45 H 0 1 N N N N N N 10.374 -7.762 17.717 5.523 1.454 1.378 H45 WCZ 94
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WCZ C27 N6 SING N N 1
WCZ N6 C26 SING N N 2
WCZ N6 C28 SING N N 3
WCZ C26 C25 SING N N 4
WCZ C25 N5 SING N N 5
WCZ C28 C29 SING N N 6
WCZ C29 N5 SING N N 7
WCZ N5 C24 SING N N 8
WCZ C24 C23 SING N N 9
WCZ N7 C33 TRIP N N 10
WCZ C34 C35 DOUB Y N 11
WCZ C34 C32 SING Y N 12
WCZ C33 C32 SING N N 13
WCZ C23 C22 SING N N 14
WCZ C35 C36 SING Y N 15
WCZ C32 C31 DOUB Y N 16
WCZ C22 N4 SING N N 17
WCZ C36 C37 DOUB Y N 18
WCZ N4 C21 SING N N 19
WCZ C31 C37 SING Y N 20
WCZ C31 C30 SING N N 21
WCZ C30 C1 SING N N 22
WCZ C21 C20 SING N N 23
WCZ C21 O1 DOUB N N 24
WCZ C20 C12 SING N N 25
WCZ C1 N1 SING N N 26
WCZ C1 C2 SING N N 27
WCZ O3 C2 DOUB N N 28
WCZ C2 N2 SING N N 29
WCZ C12 N3 SING N N 30
WCZ C12 C13 SING N N 31
WCZ N3 C11 SING N N 32
WCZ N2 C3 SING N N 33
WCZ O2 C11 DOUB N N 34
WCZ C11 C3 SING N N 35
WCZ C13 C14 SING N N 36
WCZ C3 C4 SING N N 37
WCZ C14 C19 DOUB Y N 38
WCZ C14 C15 SING Y N 39
WCZ C4 C5 SING N N 40
WCZ C19 C18 SING Y N 41
WCZ C15 C16 DOUB Y N 42
WCZ C5 C10 DOUB Y N 43
WCZ C5 C6 SING Y N 44
WCZ C10 C9 SING Y N 45
WCZ CL1 C6 SING N N 46
WCZ C6 C7 DOUB Y N 47
WCZ C9 C8 DOUB Y N 48
WCZ C7 C8 SING Y N 49
WCZ C8 CL2 SING N N 50
WCZ C18 C17 DOUB Y N 51
WCZ C16 C17 SING Y N 52
WCZ C17 F1 SING N N 53
WCZ C1 H1 SING N N 54
WCZ C3 H2 SING N N 55
WCZ C4 H3 SING N N 56
WCZ C4 H4 SING N N 57
WCZ C7 H5 SING N N 58
WCZ C9 H6 SING N N 59
WCZ C10 H7 SING N N 60
WCZ C18 H8 SING N N 61
WCZ C19 H9 SING N N 62
WCZ C20 H10 SING N N 63
WCZ C20 H11 SING N N 64
WCZ C22 H12 SING N N 65
WCZ C22 H13 SING N N 66
WCZ C23 H14 SING N N 67
WCZ C23 H15 SING N N 68
WCZ C25 H16 SING N N 69
WCZ C25 H17 SING N N 70
WCZ C26 H18 SING N N 71
WCZ C26 H19 SING N N 72
WCZ C27 H20 SING N N 73
WCZ C27 H21 SING N N 74
WCZ C27 H22 SING N N 75
WCZ C29 H23 SING N N 76
WCZ C29 H24 SING N N 77
WCZ C30 H25 SING N N 78
WCZ C30 H26 SING N N 79
WCZ C12 H27 SING N N 80
WCZ C13 H28 SING N N 81
WCZ C13 H29 SING N N 82
WCZ C15 H30 SING N N 83
WCZ C16 H31 SING N N 84
WCZ C24 H32 SING N N 85
WCZ C24 H33 SING N N 86
WCZ C28 H34 SING N N 87
WCZ C28 H35 SING N N 88
WCZ C34 H36 SING N N 89
WCZ C35 H37 SING N N 90
WCZ C36 H38 SING N N 91
WCZ C37 H39 SING N N 92
WCZ N1 H40 SING N N 93
WCZ N1 H41 SING N N 94
WCZ N2 H43 SING N N 95
WCZ N3 H44 SING N N 96
WCZ N4 H45 SING N N 97
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WCZ SMILES ACDLabs 12.01 "N#Cc1ccccc1CC(N)C(=O)NC(Cc1ccc(Cl)cc1Cl)C(=O)NC(Cc1ccc(F)cc1)CC(=O)NCCCN1CCN(C)CC1"
WCZ InChI InChI 1.06 "InChI=1S/C37H44Cl2FN7O3/c1-46-15-17-47(18-16-46)14-4-13-43-35(48)23-31(19-25-7-11-30(40)12-8-25)44-37(50)34(21-27-9-10-29(38)22-32(27)39)45-36(49)33(42)20-26-5-2-3-6-28(26)24-41/h2-3,5-12,22,31,33-34H,4,13-21,23,42H2,1H3,(H,43,48)(H,44,50)(H,45,49)/t31-,33+,34+/m0/s1"
WCZ InChIKey InChI 1.06 IZNMENYKHLOWEH-HEAIWMBWSA-N
WCZ SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CCCNC(=O)C[C@H](Cc2ccc(F)cc2)NC(=O)[C@@H](Cc3ccc(Cl)cc3Cl)NC(=O)[C@H](N)Cc4ccccc4C#N)CC1"
WCZ SMILES CACTVS 3.385 "CN1CCN(CCCNC(=O)C[CH](Cc2ccc(F)cc2)NC(=O)[CH](Cc3ccc(Cl)cc3Cl)NC(=O)[CH](N)Cc4ccccc4C#N)CC1"
WCZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)CCCNC(=O)C[C@H](Cc2ccc(cc2)F)NC(=O)[C@@H](Cc3ccc(cc3Cl)Cl)NC(=O)[C@@H](Cc4ccccc4C#N)N"
WCZ SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)CCCNC(=O)CC(Cc2ccc(cc2)F)NC(=O)C(Cc3ccc(cc3Cl)Cl)NC(=O)C(Cc4ccccc4C#N)N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WCZ "SYSTEMATIC NAME" ACDLabs 12.01 "2-cyano-D-phenylalanyl-2,4-dichloro-N-[(2S)-1-(4-fluorophenyl)-4-{[3-(4-methylpiperazin-1-yl)propyl]amino}-4-oxobutan-2-yl]-D-phenylalaninamide"
WCZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-[[(2~{R})-2-[[(2~{R})-2-azanyl-3-(2-cyanophenyl)propanoyl]amino]-3-(2,4-dichlorophenyl)propanoyl]amino]-4-(4-fluorophenyl)-~{N}-[3-(4-methylpiperazin-1-yl)propyl]butanamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WCZ "Create component" 2023-10-02 RCSB
WCZ "Initial release" 2025-01-01 RCSB
#