data_WD2 # _chem_comp.id WD2 _chem_comp.name "1-[4-(trifluoromethyl)pyridin-2-yl]piperazine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H12 F3 N3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-12 _chem_comp.pdbx_modified_date 2024-05-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 231.218 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WD2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8P1E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WD2 F2 F1 F 0 1 N N N N N N 8.574 34.255 -61.021 3.496 0.544 1.363 F2 WD2 1 WD2 C9 C1 C 0 1 N N N N N N 9.018 34.096 -59.770 2.996 0.552 0.056 C9 WD2 2 WD2 F F2 F 0 1 N N N N N N 8.369 34.967 -58.987 2.693 1.866 -0.319 F WD2 3 WD2 F1 F3 F 0 1 N N N N N N 10.308 34.374 -59.732 3.958 0.029 -0.814 F1 WD2 4 WD2 C2 C2 C 0 1 Y N N N N N 8.797 32.639 -59.371 1.748 -0.290 -0.009 C2 WD2 5 WD2 C1 C3 C 0 1 Y N N N N N 9.240 31.626 -60.214 1.822 -1.647 -0.294 C1 WD2 6 WD2 C3 C4 C 0 1 Y N N N N N 8.113 32.284 -58.199 0.504 0.271 0.217 C3 WD2 7 WD2 C4 C5 C 0 1 Y N N N N N 7.916 30.939 -57.861 -0.625 -0.539 0.148 C4 WD2 8 WD2 N N1 N 0 1 Y N N N N N 8.362 29.984 -58.732 -0.514 -1.828 -0.130 N WD2 9 WD2 C C6 C 0 1 Y N N N N N 9.013 30.302 -59.857 0.660 -2.391 -0.346 C WD2 10 WD2 N1 N2 N 0 1 N N N N N N 7.212 30.532 -56.695 -1.882 0.011 0.374 N1 WD2 11 WD2 C8 C7 C 0 1 N N N N N N 6.746 31.514 -55.676 -2.136 1.135 -0.538 C8 WD2 12 WD2 C7 C8 C 0 1 N N N N N N 6.406 30.882 -54.320 -3.492 1.762 -0.205 C7 WD2 13 WD2 N2 N3 N 0 1 N N N N N N 5.679 29.611 -54.516 -4.543 0.742 -0.325 N2 WD2 14 WD2 C6 C9 C 0 1 N N N N N N 6.599 28.677 -55.183 -4.288 -0.382 0.587 C6 WD2 15 WD2 C5 C10 C 0 1 N N N N N N 6.894 29.103 -56.604 -2.932 -1.009 0.254 C5 WD2 16 WD2 H1 H1 H 0 1 N N N N N N 9.753 31.865 -61.134 2.778 -2.116 -0.472 H1 WD2 17 WD2 H2 H2 H 0 1 N N N N N N 7.733 33.058 -57.549 0.411 1.322 0.445 H2 WD2 18 WD2 H3 H3 H 0 1 N N N N N N 9.370 29.513 -60.502 0.713 -3.447 -0.567 H3 WD2 19 WD2 H4 H4 H 0 1 N N N N N N 7.541 32.259 -55.522 -1.352 1.883 -0.422 H4 WD2 20 WD2 H5 H5 H 0 1 N N N N N N 5.845 32.014 -56.062 -2.145 0.774 -1.566 H5 WD2 21 WD2 H6 H6 H 0 1 N N N N N N 7.337 30.686 -53.767 -3.474 2.147 0.814 H6 WD2 22 WD2 H7 H7 H 0 1 N N N N N N 5.776 31.576 -53.744 -3.696 2.578 -0.899 H7 WD2 23 WD2 H8 H8 H 0 1 N N N N N N 4.872 29.763 -55.087 -4.629 0.421 -1.278 H8 WD2 24 WD2 H10 H10 H 0 1 N N N N N N 6.142 27.676 -55.198 -4.280 -0.021 1.615 H10 WD2 25 WD2 H11 H11 H 0 1 N N N N N N 7.542 28.641 -54.618 -5.073 -1.130 0.471 H11 WD2 26 WD2 H12 H12 H 0 1 N N N N N N 6.012 28.895 -57.227 -2.950 -1.394 -0.765 H12 WD2 27 WD2 H13 H13 H 0 1 N N N N N N 7.751 28.524 -56.977 -2.728 -1.824 0.948 H13 WD2 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WD2 F2 C9 SING N N 1 WD2 C1 C DOUB Y N 2 WD2 C1 C2 SING Y N 3 WD2 C N SING Y N 4 WD2 C9 F1 SING N N 5 WD2 C9 C2 SING N N 6 WD2 C9 F SING N N 7 WD2 C2 C3 DOUB Y N 8 WD2 N C4 DOUB Y N 9 WD2 C3 C4 SING Y N 10 WD2 C4 N1 SING N N 11 WD2 N1 C5 SING N N 12 WD2 N1 C8 SING N N 13 WD2 C5 C6 SING N N 14 WD2 C8 C7 SING N N 15 WD2 C6 N2 SING N N 16 WD2 N2 C7 SING N N 17 WD2 C1 H1 SING N N 18 WD2 C3 H2 SING N N 19 WD2 C H3 SING N N 20 WD2 C8 H4 SING N N 21 WD2 C8 H5 SING N N 22 WD2 C7 H6 SING N N 23 WD2 C7 H7 SING N N 24 WD2 N2 H8 SING N N 25 WD2 C6 H10 SING N N 26 WD2 C6 H11 SING N N 27 WD2 C5 H12 SING N N 28 WD2 C5 H13 SING N N 29 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WD2 InChI InChI 1.06 "InChI=1S/C10H12F3N3/c11-10(12,13)8-1-2-15-9(7-8)16-5-3-14-4-6-16/h1-2,7,14H,3-6H2" WD2 InChIKey InChI 1.06 GRKRSFCFKGOSNB-UHFFFAOYSA-N WD2 SMILES_CANONICAL CACTVS 3.385 "FC(F)(F)c1ccnc(c1)N2CCNCC2" WD2 SMILES CACTVS 3.385 "FC(F)(F)c1ccnc(c1)N2CCNCC2" WD2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cnc(cc1C(F)(F)F)N2CCNCC2" WD2 SMILES "OpenEye OEToolkits" 2.0.7 "c1cnc(cc1C(F)(F)F)N2CCNCC2" # _pdbx_chem_comp_identifier.comp_id WD2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[4-(trifluoromethyl)pyridin-2-yl]piperazine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WD2 "Create component" 2023-05-12 PDBE WD2 "Initial release" 2024-05-08 RCSB #