data_WD3 # _chem_comp.id WD3 _chem_comp.name "3-[2-[[5-chloranyl-2-[(3-fluorophenyl)methylamino]phenyl]methyl]-4-oxidanylidene-3~{H}-quinazolin-7-yl]prop-2-enoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H19 Cl F N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-29 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 463.888 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WD3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8WKF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WD3 C1 C1 C 0 1 Y N N N N N 27.060 -16.774 -21.397 1.758 3.496 -0.502 C1 WD3 1 WD3 C2 C2 C 0 1 Y N N N N N 27.972 -15.775 -21.068 2.093 2.159 -0.592 C2 WD3 2 WD3 C3 C3 C 0 1 N N N N N N 29.411 -16.138 -20.786 2.037 1.455 -1.923 C3 WD3 3 WD3 C4 C4 C 0 1 N N N N N N 29.696 -16.275 -19.329 0.707 0.761 -2.068 C4 WD3 4 WD3 C5 C5 C 0 1 Y N N N N N 30.312 -15.312 -17.306 -1.366 0.264 -1.158 C5 WD3 5 WD3 C6 C6 C 0 1 Y N N N N N 30.717 -14.183 -16.596 -2.283 0.369 -0.113 C6 WD3 6 WD3 C7 C7 C 0 1 Y N N N N N 30.935 -14.246 -15.215 -3.518 -0.267 -0.219 C7 WD3 7 WD3 C8 C8 C 0 1 N N N N N N 31.354 -13.051 -14.477 -4.493 -0.161 0.879 C8 WD3 8 WD3 C9 C9 C 0 1 N N N N N N 31.387 -12.898 -13.158 -5.689 -0.775 0.781 C9 WD3 9 WD3 C10 C10 C 0 1 N N N N N N 31.079 -11.607 -12.505 -6.659 -0.669 1.873 C10 WD3 10 WD3 C11 C11 C 0 1 Y N N N N N 30.743 -15.463 -14.561 -3.839 -1.008 -1.367 C11 WD3 11 WD3 C12 C12 C 0 1 Y N N N N N 30.343 -16.592 -15.252 -2.948 -1.116 -2.395 C12 WD3 12 WD3 C13 C13 C 0 1 Y N N N N N 30.124 -16.523 -16.628 -1.706 -0.486 -2.306 C13 WD3 13 WD3 C14 C14 C 0 1 N N N N N N 29.687 -17.705 -17.384 -0.714 -0.575 -3.390 C14 WD3 14 WD3 C15 C15 C 0 1 Y N N N N N 27.520 -14.453 -20.960 2.483 1.464 0.546 C15 WD3 15 WD3 C16 C16 C 0 1 N N N N N N 27.956 -12.131 -20.259 3.234 -0.619 1.660 C16 WD3 16 WD3 C17 C17 C 0 1 Y N N N N N 27.211 -12.020 -18.951 3.543 -2.049 1.296 C17 WD3 17 WD3 C18 C18 C 0 1 Y N N N N N 25.912 -11.533 -18.916 4.825 -2.405 0.922 C18 WD3 18 WD3 C19 C19 C 0 1 Y N N N N N 25.210 -11.472 -17.723 5.110 -3.716 0.588 C19 WD3 19 WD3 C20 C20 C 0 1 Y N N N N N 25.796 -11.893 -16.541 4.114 -4.672 0.627 C20 WD3 20 WD3 C21 C21 C 0 1 Y N N N N N 27.079 -12.362 -16.600 2.829 -4.317 1.003 C21 WD3 21 WD3 C22 C22 C 0 1 Y N N N N N 27.804 -12.438 -17.764 2.546 -3.005 1.343 C22 WD3 22 WD3 C23 C23 C 0 1 Y N N N N N 26.178 -14.155 -21.198 2.534 2.117 1.771 C23 WD3 23 WD3 C24 C24 C 0 1 Y N N N N N 25.283 -15.160 -21.519 2.197 3.454 1.855 C24 WD3 24 WD3 O1 O1 O 0 1 N N N N N N 30.907 -11.538 -11.294 -7.856 -1.284 1.774 O1 WD3 25 WD3 O2 O2 O 0 1 N N N N N N 29.490 -18.808 -16.884 -0.943 -1.204 -4.406 O2 WD3 26 WD3 N N1 N 0 1 N N N N N N 30.097 -15.190 -18.677 -0.149 0.861 -1.098 N WD3 27 WD3 C C25 C 0 1 Y N N N N N 25.734 -16.456 -21.602 1.815 4.144 0.719 C WD3 28 WD3 O O3 O 0 1 N N N N N N 31.000 -10.570 -13.289 -6.385 -0.029 2.869 O WD3 29 WD3 CL CL1 CL 0 0 N N N N N N 24.596 -17.737 -21.913 1.393 5.825 0.828 CL WD3 30 WD3 N1 N2 N 0 1 N N N N N N 29.500 -17.490 -18.728 0.464 0.066 -3.210 N1 WD3 31 WD3 N2 N3 N 0 1 N N N N N N 28.396 -13.487 -20.538 2.822 0.112 0.459 N2 WD3 32 WD3 F F1 F 0 1 N N N N N N 27.671 -12.775 -15.449 1.854 -5.251 1.042 F WD3 33 WD3 H1 H1 H 0 1 N N N N N N 27.391 -17.798 -21.492 1.455 4.036 -1.387 H1 WD3 34 WD3 H2 H2 H 0 1 N N N N N N 29.636 -17.095 -21.280 2.155 2.184 -2.725 H2 WD3 35 WD3 H3 H3 H 0 1 N N N N N N 30.060 -15.351 -21.199 2.839 0.719 -1.979 H3 WD3 36 WD3 H4 H4 H 0 1 N N N N N N 30.864 -13.249 -17.118 -2.039 0.938 0.772 H4 WD3 37 WD3 H5 H5 H 0 1 N N N N N N 31.670 -12.205 -15.069 -4.250 0.408 1.764 H5 WD3 38 WD3 H7 H7 H 0 1 N N N N N N 31.648 -13.745 -12.541 -5.933 -1.344 -0.104 H7 WD3 39 WD3 H9 H9 H 0 1 N N N N N N 30.910 -15.525 -13.496 -4.800 -1.497 -1.438 H9 WD3 40 WD3 H10 H10 H 0 1 N N N N N N 30.200 -17.525 -14.728 -3.203 -1.688 -3.274 H10 WD3 41 WD3 H11 H11 H 0 1 N N N N N N 28.838 -11.476 -20.219 2.427 -0.598 2.392 H11 WD3 42 WD3 H12 H12 H 0 1 N N N N N N 27.292 -11.802 -21.072 4.122 -0.152 2.084 H12 WD3 43 WD3 H13 H13 H 0 1 N N N N N N 25.443 -11.198 -19.829 5.605 -1.658 0.890 H13 WD3 44 WD3 H14 H14 H 0 1 N N N N N N 24.199 -11.093 -17.715 6.113 -3.992 0.295 H14 WD3 45 WD3 H15 H15 H 0 1 N N N N N N 25.258 -11.852 -15.605 4.337 -5.695 0.366 H15 WD3 46 WD3 H16 H16 H 0 1 N N N N N N 28.816 -12.815 -17.758 1.545 -2.728 1.640 H16 WD3 47 WD3 H17 H17 H 0 1 N N N N N N 25.835 -13.133 -21.131 2.837 1.579 2.658 H17 WD3 48 WD3 H18 H18 H 0 1 N N N N N N 24.244 -14.929 -21.702 2.237 3.961 2.807 H18 WD3 49 WD3 H19 H19 H 0 1 N N N N N N 30.717 -10.639 -11.051 -8.462 -1.185 2.521 H19 WD3 50 WD3 H20 H20 H 0 1 N N N N N N 29.206 -18.259 -19.296 1.142 0.029 -3.903 H20 WD3 51 WD3 H21 H21 H 0 1 N N N N N N 28.807 -13.829 -19.693 2.786 -0.343 -0.397 H21 WD3 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WD3 CL C SING N N 1 WD3 C C24 DOUB Y N 2 WD3 C C1 SING Y N 3 WD3 C24 C23 SING Y N 4 WD3 C1 C2 DOUB Y N 5 WD3 C23 C15 DOUB Y N 6 WD3 C2 C15 SING Y N 7 WD3 C2 C3 SING N N 8 WD3 C15 N2 SING N N 9 WD3 C3 C4 SING N N 10 WD3 N2 C16 SING N N 11 WD3 C16 C17 SING N N 12 WD3 C4 N1 SING N N 13 WD3 C4 N DOUB N N 14 WD3 C17 C18 DOUB Y N 15 WD3 C17 C22 SING Y N 16 WD3 C18 C19 SING Y N 17 WD3 N1 C14 SING N N 18 WD3 N C5 SING N N 19 WD3 C22 C21 DOUB Y N 20 WD3 C19 C20 DOUB Y N 21 WD3 C14 O2 DOUB N N 22 WD3 C14 C13 SING N N 23 WD3 C5 C13 DOUB Y N 24 WD3 C5 C6 SING Y N 25 WD3 C13 C12 SING Y N 26 WD3 C21 C20 SING Y N 27 WD3 C21 F SING N N 28 WD3 C6 C7 DOUB Y N 29 WD3 C12 C11 DOUB Y N 30 WD3 C7 C11 SING Y N 31 WD3 C7 C8 SING N N 32 WD3 C8 C9 DOUB N E 33 WD3 O C10 DOUB N N 34 WD3 C9 C10 SING N N 35 WD3 C10 O1 SING N N 36 WD3 C1 H1 SING N N 37 WD3 C3 H2 SING N N 38 WD3 C3 H3 SING N N 39 WD3 C6 H4 SING N N 40 WD3 C8 H5 SING N N 41 WD3 C9 H7 SING N N 42 WD3 C11 H9 SING N N 43 WD3 C12 H10 SING N N 44 WD3 C16 H11 SING N N 45 WD3 C16 H12 SING N N 46 WD3 C18 H13 SING N N 47 WD3 C19 H14 SING N N 48 WD3 C20 H15 SING N N 49 WD3 C22 H16 SING N N 50 WD3 C23 H17 SING N N 51 WD3 C24 H18 SING N N 52 WD3 O1 H19 SING N N 53 WD3 N1 H20 SING N N 54 WD3 N2 H21 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WD3 InChI InChI 1.06 "InChI=1S/C25H19ClFN3O3/c26-18-6-8-21(28-14-16-2-1-3-19(27)10-16)17(12-18)13-23-29-22-11-15(5-9-24(31)32)4-7-20(22)25(33)30-23/h1-12,28H,13-14H2,(H,31,32)(H,29,30,33)/b9-5+" WD3 InChIKey InChI 1.06 GAOVVHYYICHQJM-WEVVVXLNSA-N WD3 SMILES_CANONICAL CACTVS 3.385 "OC(=O)/C=C/c1ccc2C(=O)NC(=Nc2c1)Cc3cc(Cl)ccc3NCc4cccc(F)c4" WD3 SMILES CACTVS 3.385 "OC(=O)C=Cc1ccc2C(=O)NC(=Nc2c1)Cc3cc(Cl)ccc3NCc4cccc(F)c4" WD3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)F)CNc2ccc(cc2CC3=Nc4cc(ccc4C(=O)N3)C=CC(=O)O)Cl" WD3 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)F)CNc2ccc(cc2CC3=Nc4cc(ccc4C(=O)N3)C=CC(=O)O)Cl" # _pdbx_chem_comp_identifier.comp_id WD3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[2-[[5-chloranyl-2-[(3-fluorophenyl)methylamino]phenyl]methyl]-4-oxidanylidene-3~{H}-quinazolin-7-yl]prop-2-enoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WD3 "Create component" 2023-09-29 PDBJ WD3 "Initial release" 2024-10-02 RCSB #