data_WDA # _chem_comp.id WDA _chem_comp.name "5-({4-[(1,3-dimethyl-2,6-dioxo-1,2,3,6-tetrahydro-7H-purin-7-yl)methyl]phenyl}methyl)pyrimidine-2,4,6(1H,3H,5H)-trione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H18 N6 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-16 _chem_comp.pdbx_modified_date 2021-03-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 410.383 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WDA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KG0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WDA C10 C1 C 0 1 N N N 5.901 2.569 -25.033 -1.842 2.374 -1.307 C10 WDA 1 WDA C13 C2 C 0 1 Y N N 3.420 -0.050 -23.701 1.074 1.841 1.031 C13 WDA 2 WDA C15 C3 C 0 1 N N N 3.313 -1.479 -21.592 3.510 1.410 0.648 C15 WDA 3 WDA C17 C4 C 0 1 N N N 3.524 -1.613 -19.163 3.503 -0.759 -0.527 C17 WDA 4 WDA C21 C5 C 0 1 N N N 1.459 -0.563 -20.151 5.094 -0.304 1.447 C21 WDA 5 WDA C26 C6 C 0 1 Y N N 5.774 1.135 -22.928 0.592 1.933 -1.690 C26 WDA 6 WDA C28 C7 C 0 1 N N N 3.953 5.238 -24.953 -3.477 0.629 0.891 C28 WDA 7 WDA C01 C8 C 0 1 N N N 2.016 6.735 -25.267 -4.470 -0.050 3.004 C01 WDA 8 WDA C03 C9 C 0 1 N N N 4.117 7.576 -24.120 -4.673 -1.385 0.986 C03 WDA 9 WDA C05 C10 C 0 1 N N N 6.215 8.473 -22.962 -4.983 -2.856 -0.929 C05 WDA 10 WDA C06 C11 C 0 1 Y N N 6.021 6.091 -23.809 -3.714 -0.744 -1.081 C06 WDA 11 WDA C08 C12 C 0 1 Y N N 7.303 4.337 -23.853 -2.640 0.370 -2.593 C08 WDA 12 WDA C11 C13 C 0 1 Y N N 5.235 1.541 -24.150 -0.446 2.126 -0.797 C11 WDA 13 WDA C12 C14 C 0 1 Y N N 4.038 0.914 -24.512 -0.206 2.075 0.563 C12 WDA 14 WDA C14 C15 C 0 1 Y N N 3.965 -0.461 -22.475 2.113 1.659 0.138 C14 WDA 15 WDA C16 C16 C 0 1 N N N 2.775 -1.233 -20.373 3.730 -0.095 0.817 C16 WDA 16 WDA C19 C17 C 0 1 N N N 1.731 -0.727 -17.667 5.694 -1.604 -0.417 C19 WDA 17 WDA C25 C18 C 0 1 Y N N 5.158 0.174 -22.122 1.872 1.705 -1.222 C25 WDA 18 WDA C27 C19 C 0 1 Y N N 5.305 5.044 -24.449 -3.219 0.405 -0.479 C27 WDA 19 WDA N02 N1 N 0 1 N N N 3.395 6.512 -24.767 -4.199 -0.277 1.582 N02 WDA 20 WDA N04 N2 N 0 1 N N N 5.472 7.336 -23.635 -4.448 -1.637 -0.317 N04 WDA 21 WDA N07 N3 N 0 1 Y N N 7.274 5.641 -23.438 -3.334 -0.715 -2.361 N07 WDA 22 WDA N09 N4 N 0 1 Y N N 6.136 3.925 -24.464 -2.540 1.095 -1.463 N09 WDA 23 WDA N18 N5 N 0 1 N N N 2.975 -1.350 -17.897 4.522 -1.475 -1.049 N18 WDA 24 WDA N20 N6 N 0 1 N N N 1.010 -0.353 -18.817 5.986 -1.056 0.768 N20 WDA 25 WDA O22 O1 O 0 1 N N N 0.732 -0.185 -21.048 5.373 0.185 2.521 O22 WDA 26 WDA O23 O2 O 0 1 N N N 1.314 -0.527 -16.538 6.556 -2.267 -0.959 O23 WDA 27 WDA O24 O3 O 0 1 N N N 4.606 -2.157 -19.212 2.445 -0.655 -1.109 O24 WDA 28 WDA O29 O4 O 0 1 N N N 3.297 4.374 -25.510 -3.049 1.627 1.443 O29 WDA 29 WDA O30 O5 O 0 1 N N N 3.600 8.675 -23.977 -5.319 -2.180 1.641 O30 WDA 30 WDA H1 H1 H 0 1 N N N 5.270 2.693 -25.926 -2.383 2.999 -0.596 H1 WDA 31 WDA H2 H2 H 0 1 N N N 6.880 2.163 -25.329 -1.792 2.881 -2.271 H2 WDA 32 WDA H3 H3 H 0 1 N N N 2.492 -0.491 -24.032 1.262 1.805 2.094 H3 WDA 33 WDA H4 H4 H 0 1 N N N 2.494 -1.902 -22.192 4.233 1.805 -0.065 H4 WDA 34 WDA H5 H5 H 0 1 N N N 4.079 -2.250 -21.422 3.639 1.906 1.610 H5 WDA 35 WDA H6 H6 H 0 1 N N N 6.700 1.579 -22.594 0.404 1.969 -2.753 H6 WDA 36 WDA H7 H7 H 0 1 N N N 1.711 7.770 -25.054 -5.401 0.507 3.112 H7 WDA 37 WDA H8 H8 H 0 1 N N N 1.987 6.560 -26.353 -4.560 -1.009 3.514 H8 WDA 38 WDA H9 H9 H 0 1 N N N 1.327 6.040 -24.765 -3.652 0.521 3.444 H9 WDA 39 WDA H10 H10 H 0 1 N N N 7.215 8.129 -22.658 -5.530 -3.429 -0.179 H10 WDA 40 WDA H11 H11 H 0 1 N N N 6.315 9.313 -23.665 -5.656 -2.589 -1.743 H11 WDA 41 WDA H12 H12 H 0 1 N N N 5.655 8.802 -22.075 -4.162 -3.457 -1.318 H12 WDA 42 WDA H13 H13 H 0 1 N N N 8.158 3.692 -23.715 -2.212 0.642 -3.547 H13 WDA 43 WDA H14 H14 H 0 1 N N N 3.573 1.181 -25.449 -1.018 2.217 1.261 H14 WDA 44 WDA H15 H15 H 0 1 N N N 2.281 -2.216 -20.384 2.978 -0.470 1.512 H15 WDA 45 WDA H16 H16 H 0 1 N N N 5.625 -0.089 -21.185 2.683 1.555 -1.919 H16 WDA 46 WDA H17 H17 H 0 1 N N N 3.508 -1.626 -17.097 4.400 -1.909 -1.908 H17 WDA 47 WDA H18 H18 H 0 1 N N N 0.123 0.090 -18.688 6.865 -1.204 1.151 H18 WDA 48 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WDA O29 C28 DOUB N N 1 WDA C01 N02 SING N N 2 WDA C10 N09 SING N N 3 WDA C10 C11 SING N N 4 WDA C28 N02 SING N N 5 WDA C28 C27 SING N N 6 WDA N02 C03 SING N N 7 WDA C12 C11 DOUB Y N 8 WDA C12 C13 SING Y N 9 WDA N09 C27 SING Y N 10 WDA N09 C08 SING Y N 11 WDA C27 C06 DOUB Y N 12 WDA C11 C26 SING Y N 13 WDA C03 O30 DOUB N N 14 WDA C03 N04 SING N N 15 WDA C08 N07 DOUB Y N 16 WDA C06 N04 SING N N 17 WDA C06 N07 SING Y N 18 WDA C13 C14 DOUB Y N 19 WDA N04 C05 SING N N 20 WDA C26 C25 DOUB Y N 21 WDA C14 C25 SING Y N 22 WDA C14 C15 SING N N 23 WDA C15 C16 SING N N 24 WDA O22 C21 DOUB N N 25 WDA C16 C21 SING N N 26 WDA C16 C17 SING N N 27 WDA C21 N20 SING N N 28 WDA O24 C17 DOUB N N 29 WDA C17 N18 SING N N 30 WDA N20 C19 SING N N 31 WDA N18 C19 SING N N 32 WDA C19 O23 DOUB N N 33 WDA C10 H1 SING N N 34 WDA C10 H2 SING N N 35 WDA C13 H3 SING N N 36 WDA C15 H4 SING N N 37 WDA C15 H5 SING N N 38 WDA C26 H6 SING N N 39 WDA C01 H7 SING N N 40 WDA C01 H8 SING N N 41 WDA C01 H9 SING N N 42 WDA C05 H10 SING N N 43 WDA C05 H11 SING N N 44 WDA C05 H12 SING N N 45 WDA C08 H13 SING N N 46 WDA C12 H14 SING N N 47 WDA C16 H15 SING N N 48 WDA C25 H16 SING N N 49 WDA N18 H17 SING N N 50 WDA N20 H18 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WDA SMILES ACDLabs 12.01 "C(n2cnc1N(C(=O)N(C(c12)=O)C)C)c3ccc(cc3)CC4C(NC(=O)NC4=O)=O" WDA InChI InChI 1.03 "InChI=1S/C19H18N6O5/c1-23-14-13(17(28)24(2)19(23)30)25(9-20-14)8-11-5-3-10(4-6-11)7-12-15(26)21-18(29)22-16(12)27/h3-6,9,12H,7-8H2,1-2H3,(H2,21,22,26,27,29)" WDA InChIKey InChI 1.03 LTIPFOPSFABABS-UHFFFAOYSA-N WDA SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)N(C)c2ncn(Cc3ccc(CC4C(=O)NC(=O)NC4=O)cc3)c2C1=O" WDA SMILES CACTVS 3.385 "CN1C(=O)N(C)c2ncn(Cc3ccc(CC4C(=O)NC(=O)NC4=O)cc3)c2C1=O" WDA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1c2c(n(cn2)Cc3ccc(cc3)CC4C(=O)NC(=O)NC4=O)C(=O)N(C1=O)C" WDA SMILES "OpenEye OEToolkits" 2.0.7 "CN1c2c(n(cn2)Cc3ccc(cc3)CC4C(=O)NC(=O)NC4=O)C(=O)N(C1=O)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WDA "SYSTEMATIC NAME" ACDLabs 12.01 "5-({4-[(1,3-dimethyl-2,6-dioxo-1,2,3,6-tetrahydro-7H-purin-7-yl)methyl]phenyl}methyl)pyrimidine-2,4,6(1H,3H,5H)-trione" WDA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[[4-[[1,3-dimethyl-2,6-bis(oxidanylidene)purin-7-yl]methyl]phenyl]methyl]-1,3-diazinane-2,4,6-trione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WDA "Create component" 2020-10-16 RCSB WDA "Initial release" 2021-03-10 RCSB ##