data_WDD # _chem_comp.id WDD _chem_comp.name "1,3-dimethyl-8-{[2-(morpholin-4-yl)ethyl]amino}-3,7-dihydro-1H-purine-2,6-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H20 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-16 _chem_comp.pdbx_modified_date 2021-03-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 308.336 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WDD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KG1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WDD C10 C1 C 0 1 N N N 31.263 1.018 6.160 2.055 -0.423 0.176 C10 WDD 1 WDD C11 C2 C 0 1 N N N 31.795 0.738 4.679 3.378 -1.192 0.147 C11 WDD 2 WDD C13 C3 C 0 1 N N N 32.035 3.221 4.578 4.591 0.640 -0.872 C13 WDD 3 WDD C14 C4 C 0 1 N N N 32.550 4.429 3.723 5.728 1.641 -0.652 C14 WDD 4 WDD C16 C5 C 0 1 N N N 32.749 3.029 1.823 6.888 0.053 0.716 C16 WDD 5 WDD C17 C6 C 0 1 N N N 32.118 1.859 2.513 5.762 -0.965 0.510 C17 WDD 6 WDD C19 C7 C 0 1 Y N N 26.947 1.849 3.885 -2.109 0.436 0.097 C19 WDD 7 WDD C20 C8 C 0 1 N N N 25.603 1.806 3.323 -3.074 1.456 0.163 C20 WDD 8 WDD C01 C9 C 0 1 N N N 24.193 2.153 1.289 -5.391 2.195 0.144 C01 WDD 9 WDD C03 C10 C 0 1 N N N 26.580 2.692 1.162 -4.772 -0.142 -0.072 C03 WDD 10 WDD C05 C11 C 0 1 N N N 28.920 3.210 0.923 -4.347 -2.529 -0.308 C05 WDD 11 WDD C06 C12 C 0 1 Y N N 28.020 2.296 3.122 -2.524 -0.882 -0.062 C06 WDD 12 WDD C08 C13 C 0 1 Y N N 28.894 1.744 5.179 -0.354 -0.898 0.026 C08 WDD 13 WDD N02 N1 N 0 1 N N N 25.448 2.210 1.916 -4.382 1.135 0.076 N02 WDD 14 WDD N04 N2 N 0 1 N N N 27.841 2.729 1.774 -3.881 -1.149 -0.146 N04 WDD 15 WDD N07 N3 N 0 1 Y N N 29.205 2.217 3.913 -1.431 -1.646 -0.099 N07 WDD 16 WDD N09 N4 N 0 1 N N N 29.860 1.552 6.264 0.941 -1.362 0.029 N09 WDD 17 WDD N12 N5 N 0 1 N N N 32.483 1.902 4.006 4.495 -0.250 0.294 N12 WDD 18 WDD N18 N6 N 0 1 Y N N 27.495 1.501 5.176 -0.722 0.405 0.151 N18 WDD 19 WDD O15 O1 O 0 1 N N N 32.205 4.219 2.353 6.945 0.928 -0.413 O15 WDD 20 WDD O21 O2 O 0 1 N N N 24.596 1.403 3.904 -2.733 2.618 0.297 O21 WDD 21 WDD O22 O3 O 0 1 N N N 26.411 3.066 -0.015 -5.960 -0.395 -0.139 O22 WDD 22 WDD H101 H1 H 0 0 N N N 31.306 0.071 6.718 1.963 0.105 1.125 H101 WDD 23 WDD H102 H2 H 0 0 N N N 31.938 1.750 6.628 2.035 0.295 -0.644 H102 WDD 24 WDD H112 H3 H 0 0 N N N 30.934 0.448 4.059 3.398 -1.911 0.967 H112 WDD 25 WDD H111 H4 H 0 0 N N N 32.510 -0.097 4.728 3.470 -1.721 -0.802 H111 WDD 26 WDD H132 H5 H 0 0 N N N 32.426 3.317 5.602 3.651 1.178 -0.997 H132 WDD 27 WDD H131 H6 H 0 0 N N N 30.935 3.244 4.602 4.794 0.049 -1.765 H131 WDD 28 WDD H142 H7 H 0 0 N N N 33.643 4.507 3.819 5.840 2.265 -1.538 H142 WDD 29 WDD H141 H8 H 0 0 N N N 32.083 5.358 4.081 5.499 2.269 0.209 H141 WDD 30 WDD H162 H9 H 0 0 N N N 32.542 2.977 0.744 6.692 0.634 1.617 H162 WDD 31 WDD H161 H10 H 0 0 N N N 33.836 3.014 1.989 7.838 -0.471 0.819 H161 WDD 32 WDD H172 H11 H 0 0 N N N 31.025 1.909 2.399 5.984 -1.582 -0.361 H172 WDD 33 WDD H171 H12 H 0 0 N N N 32.491 0.924 2.069 5.677 -1.599 1.393 H171 WDD 34 WDD H013 H13 H 0 0 N N N 23.446 1.766 1.998 -5.683 2.353 1.182 H013 WDD 35 WDD H011 H14 H 0 0 N N N 23.900 3.162 0.962 -4.976 3.118 -0.261 H011 WDD 36 WDD H012 H15 H 0 0 N N N 24.250 1.487 0.416 -6.264 1.903 -0.440 H012 WDD 37 WDD H051 H16 H 0 0 N N N 29.864 3.203 1.488 -5.437 -2.542 -0.347 H051 WDD 38 WDD H052 H17 H 0 0 N N N 29.014 2.555 0.044 -3.945 -2.942 -1.232 H052 WDD 39 WDD H053 H18 H 0 0 N N N 28.698 4.236 0.594 -4.007 -3.128 0.537 H053 WDD 40 WDD H091 H20 H 0 0 N N N 29.962 2.457 6.678 1.116 -2.312 -0.066 H091 WDD 41 WDD H181 H22 H 0 0 N N N 26.970 1.144 5.948 -0.130 1.166 0.253 H181 WDD 42 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WDD O22 C03 DOUB N N 1 WDD C05 N04 SING N N 2 WDD C03 N04 SING N N 3 WDD C03 N02 SING N N 4 WDD C01 N02 SING N N 5 WDD N04 C06 SING N N 6 WDD C16 O15 SING N N 7 WDD C16 C17 SING N N 8 WDD N02 C20 SING N N 9 WDD O15 C14 SING N N 10 WDD C17 N12 SING N N 11 WDD C06 C19 DOUB Y N 12 WDD C06 N07 SING Y N 13 WDD C20 C19 SING N N 14 WDD C20 O21 DOUB N N 15 WDD C14 C13 SING N N 16 WDD C19 N18 SING Y N 17 WDD N07 C08 DOUB Y N 18 WDD N12 C13 SING N N 19 WDD N12 C11 SING N N 20 WDD C11 C10 SING N N 21 WDD N18 C08 SING Y N 22 WDD C08 N09 SING N N 23 WDD C10 N09 SING N N 24 WDD C10 H101 SING N N 25 WDD C10 H102 SING N N 26 WDD C11 H112 SING N N 27 WDD C11 H111 SING N N 28 WDD C13 H132 SING N N 29 WDD C13 H131 SING N N 30 WDD C14 H142 SING N N 31 WDD C14 H141 SING N N 32 WDD C16 H162 SING N N 33 WDD C16 H161 SING N N 34 WDD C17 H172 SING N N 35 WDD C17 H171 SING N N 36 WDD C01 H013 SING N N 37 WDD C01 H011 SING N N 38 WDD C01 H012 SING N N 39 WDD C05 H051 SING N N 40 WDD C05 H052 SING N N 41 WDD C05 H053 SING N N 42 WDD N09 H091 SING N N 43 WDD N18 H181 SING N N 44 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WDD SMILES ACDLabs 12.01 "C(Nc1nc2c(n1)C(=O)N(C)C(N2C)=O)CN3CCOCC3" WDD InChI InChI 1.03 "InChI=1S/C13H20N6O3/c1-17-10-9(11(20)18(2)13(17)21)15-12(16-10)14-3-4-19-5-7-22-8-6-19/h3-8H2,1-2H3,(H2,14,15,16)" WDD InChIKey InChI 1.03 BAASUQZVWLHLKR-UHFFFAOYSA-N WDD SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)N(C)c2nc(NCCN3CCOCC3)[nH]c2C1=O" WDD SMILES CACTVS 3.385 "CN1C(=O)N(C)c2nc(NCCN3CCOCC3)[nH]c2C1=O" WDD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1c2c([nH]c(n2)NCCN3CCOCC3)C(=O)N(C1=O)C" WDD SMILES "OpenEye OEToolkits" 2.0.7 "CN1c2c([nH]c(n2)NCCN3CCOCC3)C(=O)N(C1=O)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WDD "SYSTEMATIC NAME" ACDLabs 12.01 "1,3-dimethyl-8-{[2-(morpholin-4-yl)ethyl]amino}-3,7-dihydro-1H-purine-2,6-dione" WDD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1,3-dimethyl-8-(2-morpholin-4-ylethylamino)-7~{H}-purine-2,6-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WDD "Create component" 2020-10-16 RCSB WDD "Initial release" 2021-03-10 RCSB ##