data_WDE # _chem_comp.id WDE _chem_comp.name "3-{[(E)-anilino(2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]sulfanyl}propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H16 N2 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-12 _chem_comp.pdbx_modified_date 2023-06-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 340.396 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WDE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7FZ1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WDE C11 C1 C 0 1 N N N 5.845 8.910 18.837 -0.244 0.053 -0.497 C11 WDE 1 WDE C15 C2 C 0 1 Y N N 5.869 8.103 21.189 0.945 -2.001 -0.169 C15 WDE 2 WDE C16 C3 C 0 1 Y N N 6.763 7.975 22.327 1.829 -2.963 -0.643 C16 WDE 3 WDE C17 C4 C 0 1 Y N N 6.410 7.225 23.383 2.219 -4.004 0.176 C17 WDE 4 WDE C18 C5 C 0 1 Y N N 5.123 6.561 23.352 1.731 -4.090 1.467 C18 WDE 5 WDE C19 C6 C 0 1 Y N N 4.305 6.663 22.303 0.851 -3.135 1.942 C19 WDE 6 WDE C20 C7 C 0 1 Y N N 4.692 7.487 21.167 0.456 -2.091 1.128 C20 WDE 7 WDE C21 C8 C 0 1 N N N 7.334 5.753 16.689 3.082 2.356 0.289 C21 WDE 8 WDE C22 C9 C 0 1 N N N 6.398 5.478 15.534 4.512 2.159 -0.143 C22 WDE 9 WDE C1 C10 C 0 1 Y N N 4.975 9.671 15.673 -2.545 2.133 0.577 C1 WDE 10 WDE C2 C11 C 0 1 Y N N 4.616 10.334 14.505 -3.697 2.797 0.942 C2 WDE 11 WDE C3 C12 C 0 1 Y N N 4.699 11.714 14.396 -4.935 2.209 0.739 C3 WDE 12 WDE C4 C13 C 0 1 Y N N 5.134 12.492 15.452 -5.032 0.955 0.171 C4 WDE 13 WDE C5 C14 C 0 1 Y N N 5.489 11.855 16.621 -3.882 0.271 -0.204 C5 WDE 14 WDE C6 C15 C 0 1 Y N N 5.438 10.424 16.745 -2.631 0.869 0.003 C6 WDE 15 WDE N7 N1 N 0 1 N N N 5.938 12.383 17.816 -3.676 -0.973 -0.784 N7 WDE 16 WDE C8 C16 C 0 1 N N N 6.121 11.432 18.732 -2.366 -1.209 -0.961 C8 WDE 17 WDE C9 C17 C 0 1 N N N 5.826 10.146 18.127 -1.629 -0.099 -0.492 C9 WDE 18 WDE O10 O1 O 0 1 N N N 6.480 11.633 19.921 -1.888 -2.220 -1.449 O10 WDE 19 WDE N12 N2 N 0 1 N N N 6.284 8.964 20.152 0.553 -0.943 -0.994 N12 WDE 20 WDE S13 S1 S 0 1 N N N 5.650 7.358 18.091 0.482 1.531 0.130 S13 WDE 21 WDE C14 C18 C 0 1 N N N 7.242 7.142 17.240 2.220 1.223 -0.272 C14 WDE 22 WDE O23 O2 O 0 1 N N N 6.061 4.276 15.278 4.831 1.160 -0.743 O23 WDE 23 WDE O24 O3 O 0 1 N N N 5.983 6.453 14.842 5.433 3.095 0.139 O24 WDE 24 WDE H33 H1 H 0 1 N N N 7.715 8.485 22.323 2.210 -2.896 -1.651 H33 WDE 25 WDE H34 H2 H 0 1 N N N 7.068 7.120 24.233 2.906 -4.752 -0.192 H34 WDE 26 WDE H35 H3 H 0 1 N N N 4.817 5.967 24.201 2.037 -4.905 2.105 H35 WDE 27 WDE H36 H4 H 0 1 N N N 3.361 6.137 22.297 0.471 -3.205 2.951 H36 WDE 28 WDE H37 H5 H 0 1 N N N 4.032 7.596 20.319 -0.231 -1.345 1.500 H37 WDE 29 WDE H39 H6 H 0 1 N N N 8.365 5.587 16.344 3.027 2.349 1.378 H39 WDE 30 WDE H38 H7 H 0 1 N N N 7.100 5.045 17.498 2.716 3.311 -0.088 H38 WDE 31 WDE H25 H8 H 0 1 N N N 4.896 8.596 15.745 -1.580 2.594 0.731 H25 WDE 32 WDE H26 H9 H 0 1 N N N 4.263 9.760 13.661 -3.635 3.779 1.388 H26 WDE 33 WDE H27 H10 H 0 1 N N N 4.418 12.190 13.468 -5.832 2.736 1.028 H27 WDE 34 WDE H28 H11 H 0 1 N N N 5.194 13.567 15.364 -6.002 0.505 0.017 H28 WDE 35 WDE H29 H12 H 0 1 N N N 6.105 13.356 17.974 -4.384 -1.590 -1.028 H29 WDE 36 WDE H30 H13 H 0 1 N N N 6.950 9.673 20.384 0.844 -0.915 -1.919 H30 WDE 37 WDE H31 H14 H 0 1 N N N 7.318 7.868 16.417 2.340 1.177 -1.354 H31 WDE 38 WDE H32 H15 H 0 1 N N N 8.063 7.308 17.953 2.532 0.276 0.169 H32 WDE 39 WDE H1 H16 H 0 1 N N N 5.416 6.132 14.150 6.337 2.925 -0.159 H1 WDE 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WDE C1 C2 DOUB Y N 1 WDE C2 C3 SING Y N 2 WDE C3 C4 DOUB Y N 3 WDE C4 C5 SING Y N 4 WDE C1 C6 SING Y N 5 WDE C5 C6 DOUB Y N 6 WDE C5 N7 SING N N 7 WDE N7 C8 SING N N 8 WDE C6 C9 SING N N 9 WDE C8 C9 SING N N 10 WDE C8 O10 DOUB N N 11 WDE C9 C11 DOUB N E 12 WDE C11 N12 SING N N 13 WDE C11 S13 SING N N 14 WDE S13 C14 SING N N 15 WDE N12 C15 SING N N 16 WDE C15 C16 DOUB Y N 17 WDE C16 C17 SING Y N 18 WDE C17 C18 DOUB Y N 19 WDE C18 C19 SING Y N 20 WDE C15 C20 SING Y N 21 WDE C19 C20 DOUB Y N 22 WDE C14 C21 SING N N 23 WDE C21 C22 SING N N 24 WDE C22 O23 DOUB N N 25 WDE C22 O24 SING N N 26 WDE C16 H33 SING N N 27 WDE C17 H34 SING N N 28 WDE C18 H35 SING N N 29 WDE C19 H36 SING N N 30 WDE C20 H37 SING N N 31 WDE C21 H39 SING N N 32 WDE C21 H38 SING N N 33 WDE C1 H25 SING N N 34 WDE C2 H26 SING N N 35 WDE C3 H27 SING N N 36 WDE C4 H28 SING N N 37 WDE N7 H29 SING N N 38 WDE N12 H30 SING N N 39 WDE C14 H31 SING N N 40 WDE C14 H32 SING N N 41 WDE O24 H1 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WDE SMILES ACDLabs 12.01 "O=C(O)CCSC(\Nc1ccccc1)=C1/c2ccccc2NC1=O" WDE InChI InChI 1.06 "InChI=1S/C18H16N2O3S/c21-15(22)10-11-24-18(19-12-6-2-1-3-7-12)16-13-8-4-5-9-14(13)20-17(16)23/h1-9,19H,10-11H2,(H,20,23)(H,21,22)/b18-16+" WDE InChIKey InChI 1.06 VLBFEZPJDMZRDQ-FBMGVBCBSA-N WDE SMILES_CANONICAL CACTVS 3.385 "OC(=O)CCSC(\Nc1ccccc1)=C/2C(=O)Nc3ccccc/23" WDE SMILES CACTVS 3.385 "OC(=O)CCSC(Nc1ccccc1)=C2C(=O)Nc3ccccc23" WDE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)N/C(=C\2/c3ccccc3NC2=O)/SCCC(=O)O" WDE SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)NC(=C2c3ccccc3NC2=O)SCCC(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WDE "SYSTEMATIC NAME" ACDLabs 12.01 "3-{[(E)-anilino(2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]sulfanyl}propanoic acid" WDE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[(~{E})-(2-oxidanylidene-1~{H}-indol-3-ylidene)-phenylazanyl-methyl]sulfanylpropanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WDE "Create component" 2023-05-12 RCSB WDE "Initial release" 2023-06-14 RCSB #