data_WDF # _chem_comp.id WDF _chem_comp.name "2,4-dichloro-Nalpha-[(2R)-2-chloro-3-(2-cyanophenyl)propanoyl]-N-[(2S)-4-{[4-(dimethylamino)butyl]amino}-1-(4-fluorophenyl)-4-oxobutan-2-yl]-D-phenylalaninamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H39 Cl3 F N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-02 _chem_comp.pdbx_modified_date 2025-01-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 703.073 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WDF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UE0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WDF C1 C1 C 0 1 N N N N N N 10.262 -0.576 20.897 2.897 0.812 1.048 C1 WDF 1 WDF C10 C2 C 0 1 N N N N N N 11.265 -3.468 22.332 0.281 -1.070 -0.700 C10 WDF 2 WDF C11 C3 C 0 1 N N S N N N 11.241 -5.699 21.364 -1.690 -1.889 -1.875 C11 WDF 3 WDF C12 C4 C 0 1 N N N N N N 10.487 -6.823 22.026 -1.404 -3.361 -2.177 C12 WDF 4 WDF C13 C5 C 0 1 Y N N N N N 10.631 -6.682 23.521 0.051 -3.527 -2.533 C13 WDF 5 WDF C14 C6 C 0 1 Y N N N N N 11.619 -7.387 24.201 0.956 -3.935 -1.570 C14 WDF 6 WDF C15 C7 C 0 1 Y N N N N N 11.750 -7.247 25.582 2.290 -4.089 -1.895 C15 WDF 7 WDF C16 C8 C 0 1 Y N N N N N 10.902 -6.402 26.291 2.721 -3.832 -3.186 C16 WDF 8 WDF C17 C9 C 0 1 Y N N N N N 9.918 -5.695 25.614 1.815 -3.423 -4.149 C17 WDF 9 WDF C18 C10 C 0 1 Y N N N N N 9.783 -5.840 24.238 0.480 -3.276 -3.823 C18 WDF 10 WDF C19 C11 C 0 1 N N N N N N 11.213 -5.806 19.865 -3.196 -1.689 -1.695 C19 WDF 11 WDF C2 C12 C 0 1 N N R N N N 10.516 -2.218 22.698 0.970 -0.595 0.554 C2 WDF 12 WDF C20 C13 C 0 1 N N N N N N 11.895 -7.047 19.364 -3.490 -0.221 -1.519 C20 WDF 13 WDF C21 C14 C 0 1 N N N N N N 11.741 -9.118 18.046 -5.046 1.622 -1.173 C21 WDF 14 WDF C22 C15 C 0 1 N N N N N N 10.736 -9.694 17.087 -6.552 1.822 -0.993 C22 WDF 15 WDF C23 C16 C 0 1 N N N N N N 11.247 -10.981 16.511 -6.851 3.312 -0.815 C23 WDF 16 WDF C24 C17 C 0 1 N N N N N N 10.121 -11.946 16.262 -8.358 3.512 -0.635 C24 WDF 17 WDF C25 C18 C 0 1 N N N N N N 10.783 -13.764 14.833 -8.336 5.692 -1.689 C25 WDF 18 WDF C26 C19 C 0 1 N N N N N N 9.832 -14.225 16.997 -10.039 5.154 -0.054 C26 WDF 19 WDF C27 C20 C 0 1 N N R N N N 10.868 0.576 20.133 4.296 1.287 0.751 C27 WDF 20 WDF C28 C21 C 0 1 N N N N N N 10.466 0.560 18.685 4.370 2.804 0.936 C28 WDF 21 WDF C29 C22 C 0 1 Y N N N N N 11.177 -0.580 18.019 5.733 3.295 0.521 C29 WDF 22 WDF C3 C23 C 0 1 N N N N N N 10.734 -1.912 24.162 1.142 -1.770 1.518 C3 WDF 23 WDF C30 C24 C 0 1 Y N N N N N 10.533 -1.288 17.014 5.995 3.585 -0.819 C30 WDF 24 WDF C31 C25 C 0 1 N N N N N N 9.148 -0.887 16.617 4.971 3.413 -1.805 C31 WDF 25 WDF C32 C26 C 0 1 Y N N N N N 11.171 -2.350 16.374 7.259 4.045 -1.194 C32 WDF 26 WDF C33 C27 C 0 1 Y N N N N N 12.459 -2.706 16.764 8.241 4.209 -0.239 C33 WDF 27 WDF C34 C28 C 0 1 Y N N N N N 13.103 -2.000 17.777 7.975 3.919 1.088 C34 WDF 28 WDF C35 C29 C 0 1 Y N N N N N 12.470 -0.932 18.405 6.724 3.463 1.466 C35 WDF 29 WDF C4 C30 C 0 1 Y N N N N N 9.742 -0.871 24.606 -0.210 -2.212 2.017 C4 WDF 30 WDF C5 C31 C 0 1 Y N N N N N 8.447 -1.234 24.981 -0.873 -1.462 2.972 C5 WDF 31 WDF C6 C32 C 0 1 Y N N N N N 7.535 -0.265 25.377 -2.114 -1.868 3.430 C6 WDF 32 WDF C7 C33 C 0 1 Y N N N N N 7.906 1.070 25.401 -2.691 -3.023 2.932 C7 WDF 33 WDF C8 C34 C 0 1 Y N N N N N 9.195 1.438 25.026 -2.026 -3.772 1.977 C8 WDF 34 WDF C9 C35 C 0 1 Y N N N N N 10.111 0.470 24.628 -0.788 -3.363 1.516 C9 WDF 35 WDF CL1 CL1 CL 0 0 N N N N N N 7.931 -2.887 24.959 -0.149 -0.014 3.597 CL1 WDF 36 WDF CL2 CL2 CL 0 0 N N N N N N 6.752 2.259 25.899 -4.247 -3.533 3.506 CL2 WDF 37 WDF CL3 CL3 CL 0 0 N N N N N N 10.411 2.133 20.870 5.454 0.488 1.879 CL3 WDF 38 WDF F1 F1 F 0 1 N N N N N N 11.025 -6.264 27.632 4.025 -3.981 -3.505 F1 WDF 39 WDF N1 N1 N 0 1 N N N N N N 10.984 -1.103 21.884 2.285 -0.048 0.211 N1 WDF 40 WDF N2 N2 N 0 1 N N N N N N 10.599 -4.445 21.737 -0.996 -1.499 -0.645 N2 WDF 41 WDF N3 N3 N 0 1 N N N N N N 11.190 -7.882 18.598 -4.760 0.195 -1.344 N3 WDF 42 WDF N4 N4 N 0 1 N N N N N N 10.660 -13.306 16.213 -8.644 4.943 -0.464 N4 WDF 43 WDF N5 N5 N 0 1 N N N N N N 8.119 -0.593 16.313 4.159 3.277 -2.588 N5 WDF 44 WDF O1 O1 O 0 1 N N N N N N 9.172 -1.015 20.627 2.323 1.201 2.044 O1 WDF 45 WDF O2 O2 O 0 1 N N N N N N 13.047 -7.268 19.639 -2.585 0.585 -1.536 O2 WDF 46 WDF O3 O3 O 0 1 N N N N N N 12.439 -3.588 22.578 0.875 -1.066 -1.757 O3 WDF 47 WDF H1 H1 H 0 1 N N N N N N 12.285 -5.706 21.711 -1.338 -1.273 -2.702 H1 WDF 48 WDF H2 H2 H 0 1 N N N N N N 9.424 -6.770 21.749 -1.634 -3.964 -1.299 H2 WDF 49 WDF H3 H3 H 0 1 N N N N N N 10.902 -7.789 21.703 -2.022 -3.687 -3.014 H3 WDF 50 WDF H4 H4 H 0 1 N N N N N N 12.284 -8.043 23.659 0.619 -4.135 -0.563 H4 WDF 51 WDF H5 H5 H 0 1 N N N N N N 12.516 -7.799 26.106 2.996 -4.407 -1.143 H5 WDF 52 WDF H6 H6 H 0 1 N N N N N N 9.258 -5.033 26.155 2.150 -3.223 -5.156 H6 WDF 53 WDF H7 H7 H 0 1 N N N N N N 9.011 -5.293 23.718 -0.228 -2.961 -4.575 H7 WDF 54 WDF H8 H8 H 0 1 N N N N N N 11.721 -4.928 19.439 -3.720 -2.061 -2.576 H8 WDF 55 WDF H9 H9 H 0 1 N N N N N N 10.165 -5.821 19.532 -3.533 -2.235 -0.814 H9 WDF 56 WDF H10 H10 H 0 1 N N N N N N 9.442 -2.379 22.523 0.368 0.180 1.028 H10 WDF 57 WDF H11 H11 H 0 1 N N N N N N 11.934 -9.835 18.858 -4.710 2.168 -2.054 H11 WDF 58 WDF H12 H12 H 0 1 N N N N N N 12.680 -8.903 17.516 -4.523 1.995 -0.292 H12 WDF 59 WDF H13 H13 H 0 1 N N N N N N 10.559 -8.977 16.272 -7.076 1.449 -1.873 H13 WDF 60 WDF H14 H14 H 0 1 N N N N N N 9.793 -9.884 17.620 -6.889 1.276 -0.112 H14 WDF 61 WDF H15 H15 H 0 1 N N N N N N 11.959 -11.433 17.217 -6.328 3.685 0.066 H15 WDF 62 WDF H16 H16 H 0 1 N N N N N N 11.758 -10.771 15.560 -6.515 3.858 -1.696 H16 WDF 63 WDF H17 H17 H 0 1 N N N N N N 9.636 -11.707 15.304 -8.881 3.139 -1.515 H17 WDF 64 WDF H18 H18 H 0 1 N N N N N N 9.384 -11.871 17.075 -8.694 2.966 0.246 H18 WDF 65 WDF H19 H19 H 0 1 N N N N N N 11.189 -14.786 14.820 -8.942 5.310 -2.511 H19 WDF 66 WDF H20 H20 H 0 1 N N N N N N 9.792 -13.757 14.355 -8.557 6.748 -1.535 H20 WDF 67 WDF H21 H21 H 0 1 N N N N N N 11.460 -13.094 14.283 -7.280 5.574 -1.931 H21 WDF 68 WDF H22 H22 H 0 1 N N N N N N 9.755 -13.858 18.031 -10.707 4.753 -0.817 H22 WDF 69 WDF H23 H23 H 0 1 N N N N N N 8.827 -14.283 16.553 -10.221 4.646 0.892 H23 WDF 70 WDF H24 H24 H 0 1 N N N N N N 10.292 -15.224 16.996 -10.224 6.222 0.065 H24 WDF 71 WDF H25 H25 H 0 1 N N N N N N 11.964 0.516 20.203 4.556 1.033 -0.276 H25 WDF 72 WDF H26 H26 H 0 1 N N N N N N 10.753 1.509 18.208 3.609 3.282 0.319 H26 WDF 73 WDF H27 H27 H 0 1 N N N N N N 9.378 0.421 18.601 4.198 3.052 1.983 H27 WDF 74 WDF H28 H28 H 0 1 N N N N N N 10.594 -2.829 24.754 1.627 -2.597 1.000 H28 WDF 75 WDF H29 H29 H 0 1 N N N N N N 11.756 -1.532 24.310 1.757 -1.460 2.363 H29 WDF 76 WDF H30 H30 H 0 1 N N N N N N 10.671 -2.891 15.584 7.468 4.271 -2.229 H30 WDF 77 WDF H31 H31 H 0 1 N N N N N N 12.960 -3.531 16.280 9.219 4.564 -0.527 H31 WDF 78 WDF H32 H32 H 0 1 N N N N N N 14.101 -2.284 18.077 8.747 4.049 1.832 H32 WDF 79 WDF H33 H33 H 0 1 N N N N N N 12.975 -0.381 19.184 6.522 3.243 2.504 H33 WDF 80 WDF H34 H34 H 0 1 N N N N N N 6.535 -0.552 25.667 -2.632 -1.284 4.176 H34 WDF 81 WDF H35 H35 H 0 1 N N N N N N 9.485 2.478 25.044 -2.476 -4.673 1.589 H35 WDF 82 WDF H36 H36 H 0 1 N N N N N N 11.110 0.760 24.336 -0.272 -3.945 0.768 H36 WDF 83 WDF H37 H37 H 0 1 N N N N N N 11.887 -0.717 22.075 2.716 -0.306 -0.620 H37 WDF 84 WDF H38 H38 H 0 1 N N N N N N 9.627 -4.319 21.538 -1.454 -1.549 0.208 H38 WDF 85 WDF H39 H39 H 0 1 N N N N N N 10.239 -7.651 18.392 -5.485 -0.450 -1.330 H39 WDF 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WDF C25 N4 SING N N 1 WDF N4 C24 SING N N 2 WDF N4 C26 SING N N 3 WDF C24 C23 SING N N 4 WDF N5 C31 TRIP N N 5 WDF C32 C33 DOUB Y N 6 WDF C32 C30 SING Y N 7 WDF C23 C22 SING N N 8 WDF C31 C30 SING N N 9 WDF C33 C34 SING Y N 10 WDF C30 C29 DOUB Y N 11 WDF C22 C21 SING N N 12 WDF C34 C35 DOUB Y N 13 WDF C29 C35 SING Y N 14 WDF C29 C28 SING N N 15 WDF C21 N3 SING N N 16 WDF N3 C20 SING N N 17 WDF C28 C27 SING N N 18 WDF C20 O2 DOUB N N 19 WDF C20 C19 SING N N 20 WDF C19 C11 SING N N 21 WDF C27 CL3 SING N N 22 WDF C27 C1 SING N N 23 WDF O1 C1 DOUB N N 24 WDF C1 N1 SING N N 25 WDF C11 N2 SING N N 26 WDF C11 C12 SING N N 27 WDF N2 C10 SING N N 28 WDF N1 C2 SING N N 29 WDF C12 C13 SING N N 30 WDF C10 O3 DOUB N N 31 WDF C10 C2 SING N N 32 WDF C2 C3 SING N N 33 WDF C13 C14 DOUB Y N 34 WDF C13 C18 SING Y N 35 WDF C3 C4 SING N N 36 WDF C14 C15 SING Y N 37 WDF C18 C17 DOUB Y N 38 WDF C4 C9 DOUB Y N 39 WDF C4 C5 SING Y N 40 WDF C9 C8 SING Y N 41 WDF CL1 C5 SING N N 42 WDF C5 C6 DOUB Y N 43 WDF C8 C7 DOUB Y N 44 WDF C6 C7 SING Y N 45 WDF C7 CL2 SING N N 46 WDF C15 C16 DOUB Y N 47 WDF C17 C16 SING Y N 48 WDF C16 F1 SING N N 49 WDF C11 H1 SING N N 50 WDF C12 H2 SING N N 51 WDF C12 H3 SING N N 52 WDF C14 H4 SING N N 53 WDF C15 H5 SING N N 54 WDF C17 H6 SING N N 55 WDF C18 H7 SING N N 56 WDF C19 H8 SING N N 57 WDF C19 H9 SING N N 58 WDF C2 H10 SING N N 59 WDF C21 H11 SING N N 60 WDF C21 H12 SING N N 61 WDF C22 H13 SING N N 62 WDF C22 H14 SING N N 63 WDF C23 H15 SING N N 64 WDF C23 H16 SING N N 65 WDF C24 H17 SING N N 66 WDF C24 H18 SING N N 67 WDF C25 H19 SING N N 68 WDF C25 H20 SING N N 69 WDF C25 H21 SING N N 70 WDF C26 H22 SING N N 71 WDF C26 H23 SING N N 72 WDF C26 H24 SING N N 73 WDF C27 H25 SING N N 74 WDF C28 H26 SING N N 75 WDF C28 H27 SING N N 76 WDF C3 H28 SING N N 77 WDF C3 H29 SING N N 78 WDF C32 H30 SING N N 79 WDF C33 H31 SING N N 80 WDF C34 H32 SING N N 81 WDF C35 H33 SING N N 82 WDF C6 H34 SING N N 83 WDF C8 H35 SING N N 84 WDF C9 H36 SING N N 85 WDF N1 H37 SING N N 86 WDF N2 H38 SING N N 87 WDF N3 H39 SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WDF SMILES ACDLabs 12.01 "Clc1cc(Cl)ccc1CC(NC(=O)C(Cl)Cc1ccccc1C#N)C(=O)NC(Cc1ccc(F)cc1)CC(=O)NCCCCN(C)C" WDF InChI InChI 1.06 "InChI=1S/C35H39Cl3FN5O3/c1-44(2)16-6-5-15-41-33(45)21-29(17-23-9-13-28(39)14-10-23)42-35(47)32(19-25-11-12-27(36)20-30(25)37)43-34(46)31(38)18-24-7-3-4-8-26(24)22-40/h3-4,7-14,20,29,31-32H,5-6,15-19,21H2,1-2H3,(H,41,45)(H,42,47)(H,43,46)/t29-,31+,32+/m0/s1" WDF InChIKey InChI 1.06 MNUPUCOFSLSMLT-JIZBBPSKSA-N WDF SMILES_CANONICAL CACTVS 3.385 "CN(C)CCCCNC(=O)C[C@H](Cc1ccc(F)cc1)NC(=O)[C@@H](Cc2ccc(Cl)cc2Cl)NC(=O)[C@H](Cl)Cc3ccccc3C#N" WDF SMILES CACTVS 3.385 "CN(C)CCCCNC(=O)C[CH](Cc1ccc(F)cc1)NC(=O)[CH](Cc2ccc(Cl)cc2Cl)NC(=O)[CH](Cl)Cc3ccccc3C#N" WDF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)CCCCNC(=O)C[C@H](Cc1ccc(cc1)F)NC(=O)[C@@H](Cc2ccc(cc2Cl)Cl)NC(=O)[C@@H](Cc3ccccc3C#N)Cl" WDF SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)CCCCNC(=O)CC(Cc1ccc(cc1)F)NC(=O)C(Cc2ccc(cc2Cl)Cl)NC(=O)C(Cc3ccccc3C#N)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WDF "SYSTEMATIC NAME" ACDLabs 12.01 "2,4-dichloro-Nalpha-[(2R)-2-chloro-3-(2-cyanophenyl)propanoyl]-N-[(2S)-4-{[4-(dimethylamino)butyl]amino}-1-(4-fluorophenyl)-4-oxobutan-2-yl]-D-phenylalaninamide" WDF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-[[(2~{R})-2-[[(2~{R})-2-chloranyl-3-(2-cyanophenyl)propanoyl]amino]-3-(2,4-dichlorophenyl)propanoyl]amino]-~{N}-[4-(dimethylamino)butyl]-4-(4-fluorophenyl)butanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WDF "Create component" 2023-10-02 RCSB WDF "Initial release" 2025-01-15 RCSB #