data_WDG # _chem_comp.id WDG _chem_comp.name "1-{2-[(1,3-dimethyl-2,6-dioxo-2,3,6,7-tetrahydro-1H-purin-8-yl)sulfanyl]ethyl}piperidine-4-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H21 N5 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-16 _chem_comp.pdbx_modified_date 2021-03-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 367.423 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WDG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KG6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WDG C10 C1 C 0 1 N N N 29.294 -0.486 -0.344 -0.992 1.310 -0.110 C10 WDG 1 WDG N12 N1 N 0 1 N N N 31.555 -1.631 -1.032 -3.420 1.022 -0.266 N12 WDG 2 WDG C13 C2 C 0 1 N N N 32.517 -2.671 -0.625 -4.713 1.676 -0.503 C13 WDG 3 WDG C15 C3 C 0 1 N N N 34.466 -1.780 -1.935 -5.878 -0.352 0.373 C15 WDG 4 WDG C20 C4 C 0 1 N N N 32.336 -0.390 -1.386 -3.483 0.124 0.895 C20 WDG 5 WDG C22 C5 C 0 1 Y N N 26.131 2.782 0.505 3.815 0.742 0.077 C22 WDG 6 WDG C01 C6 C 0 1 N N N 24.670 6.313 0.387 7.087 -1.033 0.059 C01 WDG 7 WDG C03 C7 C 0 1 N N N 23.782 4.076 1.240 4.792 -1.798 -0.142 C03 WDG 8 WDG C05 C8 C 0 1 N N N 22.811 1.919 2.136 2.562 -2.751 -0.360 C05 WDG 9 WDG C06 C9 C 0 1 Y N N 25.097 2.046 1.110 2.939 -0.327 -0.082 C06 WDG 10 WDG C08 C10 C 0 1 Y N N 26.721 0.635 0.715 1.734 1.476 0.048 C08 WDG 11 WDG C11 C11 C 0 1 N N N 30.560 -1.275 0.107 -2.349 2.016 -0.105 C11 WDG 12 WDG C14 C12 C 0 1 N N N 33.625 -3.005 -1.625 -5.773 0.615 -0.809 C14 WDG 13 WDG C16 C13 C 0 1 N N N 35.408 -2.104 -3.176 -6.878 -1.432 0.054 C16 WDG 14 WDG C19 C14 C 0 1 N N N 33.631 -0.545 -2.226 -4.506 -0.982 0.630 C19 WDG 15 WDG C23 C15 C 0 1 N N N 26.073 4.195 0.228 5.198 0.496 0.123 C23 WDG 16 WDG N02 N2 N 0 1 N N N 24.852 4.817 0.613 5.647 -0.771 0.011 N02 WDG 17 WDG N04 N3 N 0 1 N N N 23.922 2.672 1.474 3.461 -1.606 -0.192 N04 WDG 18 WDG N07 N4 N 0 1 Y N N 25.462 0.709 1.243 1.700 0.166 -0.094 N07 WDG 19 WDG N21 N5 N 0 1 Y N N 27.153 1.869 0.265 3.027 1.883 0.163 N21 WDG 20 WDG O17 O1 O 0 1 N N N 35.525 -3.309 -3.496 -7.134 -2.397 0.951 O17 WDG 21 WDG O18 O2 O 0 1 N N N 35.957 -1.142 -3.759 -7.450 -1.430 -1.011 O18 WDG 22 WDG O24 O3 O 0 1 N N N 26.962 4.850 -0.296 5.983 1.417 0.262 O24 WDG 23 WDG O25 O4 O 0 1 N N N 22.741 4.631 1.567 5.233 -2.927 -0.240 O25 WDG 24 WDG S09 S1 S 0 1 N N N 27.698 -0.842 0.602 0.326 2.534 0.088 S09 WDG 25 WDG H101 H1 H 0 0 N N N 29.513 0.587 -0.238 -0.951 0.595 0.712 H101 WDG 26 WDG H102 H2 H 0 0 N N N 29.114 -0.720 -1.404 -0.860 0.783 -1.056 H102 WDG 27 WDG H132 H4 H 0 0 N N N 31.950 -3.594 -0.434 -5.005 2.235 0.386 H132 WDG 28 WDG H131 H5 H 0 0 N N N 32.997 -2.336 0.306 -4.626 2.357 -1.349 H131 WDG 29 WDG H151 H6 H 0 0 N N N 35.112 -1.570 -1.070 -6.200 0.192 1.261 H151 WDG 30 WDG H201 H7 H 0 0 N N N 32.618 0.097 -0.441 -2.502 -0.320 1.063 H201 WDG 31 WDG H202 H8 H 0 0 N N N 31.660 0.269 -1.950 -3.781 0.691 1.777 H202 WDG 32 WDG H012 H9 H 0 0 N N N 23.675 6.619 0.741 7.623 -0.093 0.187 H012 WDG 33 WDG H013 H10 H 0 0 N N N 25.443 6.864 0.943 7.309 -1.695 0.896 H013 WDG 34 WDG H011 H11 H 0 0 N N N 24.761 6.535 -0.686 7.402 -1.507 -0.871 H011 WDG 35 WDG H051 H12 H 0 0 N N N 21.974 2.603 2.339 3.149 -3.667 -0.426 H051 WDG 36 WDG H052 H13 H 0 0 N N N 22.471 1.110 1.473 1.888 -2.812 0.494 H052 WDG 37 WDG H053 H14 H 0 0 N N N 23.172 1.490 3.083 1.980 -2.625 -1.273 H053 WDG 38 WDG H111 H15 H 0 0 N N N 30.228 -2.213 0.575 -2.481 2.542 0.840 H111 WDG 39 WDG H112 H16 H 0 0 N N N 31.096 -0.665 0.849 -2.391 2.730 -0.927 H112 WDG 40 WDG H141 H17 H 0 0 N N N 33.170 -3.374 -2.556 -6.736 1.099 -0.970 H141 WDG 41 WDG H142 H18 H 0 0 N N N 34.271 -3.786 -1.198 -5.488 0.064 -1.706 H142 WDG 42 WDG H191 H19 H 0 0 N N N 34.260 0.338 -2.042 -4.564 -1.640 1.497 H191 WDG 43 WDG H192 H20 H 0 0 N N N 33.343 -0.575 -3.287 -4.201 -1.558 -0.244 H192 WDG 44 WDG H211 H22 H 0 0 N N N 28.038 2.069 -0.156 3.339 2.794 0.278 H211 WDG 45 WDG H3 H23 H 0 1 N N N 36.096 -3.382 -4.252 -7.783 -3.068 0.701 H3 WDG 46 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WDG O18 C16 DOUB N N 1 WDG O17 C16 SING N N 2 WDG C16 C15 SING N N 3 WDG C19 C15 SING N N 4 WDG C19 C20 SING N N 5 WDG C15 C14 SING N N 6 WDG C14 C13 SING N N 7 WDG C20 N12 SING N N 8 WDG N12 C13 SING N N 9 WDG N12 C11 SING N N 10 WDG C10 C11 SING N N 11 WDG C10 S09 SING N N 12 WDG O24 C23 DOUB N N 13 WDG C23 C22 SING N N 14 WDG C23 N02 SING N N 15 WDG N21 C22 SING Y N 16 WDG N21 C08 SING Y N 17 WDG C01 N02 SING N N 18 WDG C22 C06 DOUB Y N 19 WDG S09 C08 SING N N 20 WDG N02 C03 SING N N 21 WDG C08 N07 DOUB Y N 22 WDG C06 N07 SING Y N 23 WDG C06 N04 SING N N 24 WDG C03 N04 SING N N 25 WDG C03 O25 DOUB N N 26 WDG N04 C05 SING N N 27 WDG C10 H101 SING N N 28 WDG C10 H102 SING N N 29 WDG C13 H132 SING N N 30 WDG C13 H131 SING N N 31 WDG C15 H151 SING N N 32 WDG C20 H201 SING N N 33 WDG C20 H202 SING N N 34 WDG C01 H012 SING N N 35 WDG C01 H013 SING N N 36 WDG C01 H011 SING N N 37 WDG C05 H051 SING N N 38 WDG C05 H052 SING N N 39 WDG C05 H053 SING N N 40 WDG C11 H111 SING N N 41 WDG C11 H112 SING N N 42 WDG C14 H141 SING N N 43 WDG C14 H142 SING N N 44 WDG C19 H191 SING N N 45 WDG C19 H192 SING N N 46 WDG N21 H211 SING N N 47 WDG O17 H3 SING N N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WDG SMILES ACDLabs 12.01 "C(CN1CCC(C(O)=O)CC1)Sc3nc2c(C(N(C)C(N2C)=O)=O)n3" WDG InChI InChI 1.03 "InChI=1S/C15H21N5O4S/c1-18-11-10(12(21)19(2)15(18)24)16-14(17-11)25-8-7-20-5-3-9(4-6-20)13(22)23/h9H,3-8H2,1-2H3,(H,16,17)(H,22,23)" WDG InChIKey InChI 1.03 SRBZGKUKUDZIDS-UHFFFAOYSA-N WDG SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)N(C)c2nc([nH]c2C1=O)SCCN3CCC(CC3)C(O)=O" WDG SMILES CACTVS 3.385 "CN1C(=O)N(C)c2nc([nH]c2C1=O)SCCN3CCC(CC3)C(O)=O" WDG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1c2c([nH]c(n2)SCCN3CCC(CC3)C(=O)O)C(=O)N(C1=O)C" WDG SMILES "OpenEye OEToolkits" 2.0.7 "CN1c2c([nH]c(n2)SCCN3CCC(CC3)C(=O)O)C(=O)N(C1=O)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WDG "SYSTEMATIC NAME" ACDLabs 12.01 "1-{2-[(1,3-dimethyl-2,6-dioxo-2,3,6,7-tetrahydro-1H-purin-8-yl)sulfanyl]ethyl}piperidine-4-carboxylic acid" WDG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[2-[[1,3-dimethyl-2,6-bis(oxidanylidene)-7~{H}-purin-8-yl]sulfanyl]ethyl]piperidine-4-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WDG "Create component" 2020-10-16 RCSB WDG "Initial release" 2021-03-10 RCSB ##