data_WDJ # _chem_comp.id WDJ _chem_comp.name "8-{[2-(1,1-dioxo-1lambda~6~,4-thiazinan-4-yl)ethyl]sulfanyl}-1,3-dimethyl-3,7-dihydro-1H-purine-2,6-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H19 N5 O4 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-16 _chem_comp.pdbx_modified_date 2021-03-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 373.451 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WDJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KG7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WDJ C03 C1 C 0 1 N N N 24.024 -4.226 -1.102 -4.863 1.681 -0.082 C03 WDJ 1 WDJ C11 C2 C 0 1 N N N 30.180 -0.350 -0.317 2.438 -1.817 -0.185 C11 WDJ 2 WDJ C13 C3 C 0 1 N N N 30.099 -1.932 1.807 3.469 0.118 0.835 C13 WDJ 3 WDJ C17 C4 C 0 1 N N N 30.536 -2.836 -0.505 4.779 -1.362 -0.587 C17 WDJ 4 WDJ C21 C5 C 0 1 Y N N 26.331 -2.799 -0.469 -3.774 -0.818 0.067 C21 WDJ 5 WDJ C22 C6 C 0 1 N N N 26.355 -4.219 -0.201 -5.166 -0.634 0.127 C22 WDJ 6 WDJ C01 C7 C 0 1 N N N 24.992 -6.327 -0.346 -7.121 0.812 0.113 C01 WDJ 7 WDJ C05 C8 C 0 1 N N N 22.894 -2.172 -1.917 -2.678 2.736 -0.287 C05 WDJ 8 WDJ C06 C9 C 0 1 Y N N 25.227 -2.118 -1.020 -2.947 0.292 -0.070 C06 WDJ 9 WDJ C08 C10 C 0 1 Y N N 26.772 -0.626 -0.692 -1.664 -1.459 0.007 C08 WDJ 10 WDJ C10 C11 C 0 1 N N N 29.223 0.598 0.485 1.052 -1.170 -0.164 C10 WDJ 11 WDJ C14 C12 C 0 1 N N N 30.575 -3.263 2.436 4.217 1.411 0.497 C14 WDJ 12 WDJ C16 C13 C 0 1 N N N 31.232 -4.121 -0.019 5.726 -0.294 -1.143 C16 WDJ 13 WDJ N02 N1 N 0 1 N N N 25.149 -4.883 -0.548 -5.671 0.615 0.051 N02 WDJ 14 WDJ N04 N2 N 0 1 N N N 24.079 -2.818 -1.338 -3.524 1.549 -0.143 N04 WDJ 15 WDJ N07 N3 N 0 1 Y N N 25.499 -0.758 -1.164 -1.688 -0.146 -0.101 N07 WDJ 16 WDJ N12 N4 N 0 1 N N N 30.599 -1.668 0.415 3.463 -0.773 -0.327 N12 WDJ 17 WDJ N20 N5 N 0 1 Y N N 27.301 -1.832 -0.268 -2.938 -1.926 0.114 N20 WDJ 18 WDJ O18 O1 O 0 1 N N N 32.973 -3.328 1.635 6.559 2.128 -0.495 O18 WDJ 19 WDJ O19 O2 O 0 1 N N N 31.809 -5.434 2.023 6.545 0.420 1.266 O19 WDJ 20 WDJ O23 O3 O 0 1 N N N 27.298 -4.835 0.277 -5.910 -1.592 0.247 O23 WDJ 21 WDJ O24 O4 O 0 1 N N N 23.006 -4.848 -1.382 -5.353 2.792 -0.152 O24 WDJ 22 WDJ S09 S1 S 0 1 N N N 27.725 0.833 -0.590 -0.211 -2.455 0.011 S09 WDJ 23 WDJ S15 S2 S 0 1 N N N 31.782 -4.095 1.575 5.946 1.000 0.115 S15 WDJ 24 WDJ H112 H1 H 0 0 N N N 31.096 0.213 -0.550 2.600 -2.360 0.746 H112 WDJ 25 WDJ H111 H2 H 0 0 N N N 29.673 -0.629 -1.252 2.504 -2.507 -1.025 H111 WDJ 26 WDJ H132 H3 H 0 0 N N N 30.440 -1.109 2.453 3.963 -0.379 1.670 H132 WDJ 27 WDJ H131 H4 H 0 0 N N N 28.999 -1.944 1.777 2.442 0.356 1.113 H131 WDJ 28 WDJ H172 H5 H 0 0 N N N 31.003 -2.540 -1.456 4.677 -2.169 -1.313 H172 WDJ 29 WDJ H171 H6 H 0 0 N N N 29.475 -3.072 -0.675 5.187 -1.761 0.341 H171 WDJ 30 WDJ H013 H7 H 0 0 N N N 25.916 -6.740 0.086 -7.536 0.776 -0.894 H013 WDJ 31 WDJ H012 H8 H 0 0 N N N 24.152 -6.512 0.340 -7.569 0.025 0.719 H012 WDJ 32 WDJ H011 H9 H 0 0 N N N 24.790 -6.812 -1.312 -7.337 1.782 0.561 H011 WDJ 33 WDJ H051 H10 H 0 0 N N N 23.085 -1.096 -2.039 -3.305 3.627 -0.327 H051 WDJ 34 WDJ H052 H11 H 0 0 N N N 22.675 -2.619 -2.898 -2.001 2.806 0.564 H052 WDJ 35 WDJ H053 H12 H 0 0 N N N 22.033 -2.317 -1.248 -2.097 2.659 -1.207 H053 WDJ 36 WDJ H101 H13 H 0 0 N N N 29.713 1.564 0.676 0.986 -0.479 0.677 H101 WDJ 37 WDJ H102 H14 H 0 0 N N N 28.939 0.135 1.442 0.890 -0.627 -1.095 H102 WDJ 38 WDJ H142 H15 H 0 0 N N N 29.702 -3.927 2.522 3.754 1.886 -0.369 H142 WDJ 39 WDJ H141 H16 H 0 0 N N N 30.967 -3.041 3.439 4.179 2.089 1.349 H141 WDJ 40 WDJ H162 H17 H 0 0 N N N 30.516 -4.951 -0.116 6.691 -0.747 -1.375 H162 WDJ 41 WDJ H161 H18 H 0 0 N N N 32.098 -4.305 -0.672 5.298 0.141 -2.045 H161 WDJ 42 WDJ H201 H21 H 0 0 N N N 28.214 -1.978 0.113 -3.209 -2.853 0.206 H201 WDJ 43 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WDJ C05 N04 SING N N 1 WDJ O24 C03 DOUB N N 2 WDJ N04 C03 SING N N 3 WDJ N04 C06 SING N N 4 WDJ N07 C06 SING Y N 5 WDJ N07 C08 DOUB Y N 6 WDJ C03 N02 SING N N 7 WDJ C06 C21 DOUB Y N 8 WDJ C08 S09 SING N N 9 WDJ C08 N20 SING Y N 10 WDJ S09 C10 SING N N 11 WDJ N02 C01 SING N N 12 WDJ N02 C22 SING N N 13 WDJ C17 C16 SING N N 14 WDJ C17 N12 SING N N 15 WDJ C21 N20 SING Y N 16 WDJ C21 C22 SING N N 17 WDJ C11 N12 SING N N 18 WDJ C11 C10 SING N N 19 WDJ C22 O23 DOUB N N 20 WDJ C16 S15 SING N N 21 WDJ N12 C13 SING N N 22 WDJ S15 O18 DOUB N N 23 WDJ S15 O19 DOUB N N 24 WDJ S15 C14 SING N N 25 WDJ C13 C14 SING N N 26 WDJ C11 H112 SING N N 27 WDJ C11 H111 SING N N 28 WDJ C13 H132 SING N N 29 WDJ C13 H131 SING N N 30 WDJ C17 H172 SING N N 31 WDJ C17 H171 SING N N 32 WDJ C01 H013 SING N N 33 WDJ C01 H012 SING N N 34 WDJ C01 H011 SING N N 35 WDJ C05 H051 SING N N 36 WDJ C05 H052 SING N N 37 WDJ C05 H053 SING N N 38 WDJ C10 H101 SING N N 39 WDJ C10 H102 SING N N 40 WDJ C14 H142 SING N N 41 WDJ C14 H141 SING N N 42 WDJ C16 H162 SING N N 43 WDJ C16 H161 SING N N 44 WDJ N20 H201 SING N N 45 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WDJ SMILES ACDLabs 12.01 "C3(N(C(c2nc(SCCN1CCS(CC1)(=O)=O)nc2N3C)=O)C)=O" WDJ InChI InChI 1.03 "InChI=1S/C13H19N5O4S2/c1-16-10-9(11(19)17(2)13(16)20)14-12(15-10)23-6-3-18-4-7-24(21,22)8-5-18/h3-8H2,1-2H3,(H,14,15)" WDJ InChIKey InChI 1.03 YPZHYYKYMSTZFD-UHFFFAOYSA-N WDJ SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)N(C)c2nc([nH]c2C1=O)SCCN3CC[S](=O)(=O)CC3" WDJ SMILES CACTVS 3.385 "CN1C(=O)N(C)c2nc([nH]c2C1=O)SCCN3CC[S](=O)(=O)CC3" WDJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1c2c([nH]c(n2)SCCN3CCS(=O)(=O)CC3)C(=O)N(C1=O)C" WDJ SMILES "OpenEye OEToolkits" 2.0.7 "CN1c2c([nH]c(n2)SCCN3CCS(=O)(=O)CC3)C(=O)N(C1=O)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WDJ "SYSTEMATIC NAME" ACDLabs 12.01 "8-{[2-(1,1-dioxo-1lambda~6~,4-thiazinan-4-yl)ethyl]sulfanyl}-1,3-dimethyl-3,7-dihydro-1H-purine-2,6-dione" WDJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "8-[2-[1,1-bis(oxidanylidene)-1,4-thiazinan-4-yl]ethylsulfanyl]-1,3-dimethyl-7~{H}-purine-2,6-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WDJ "Create component" 2020-10-16 RCSB WDJ "Initial release" 2021-03-10 RCSB ##