data_WDM # _chem_comp.id WDM _chem_comp.name "1,3-dimethyl-8-{[2-(morpholin-4-yl)-2-oxoethyl]sulfanyl}-6-sulfanylidene-1,3,6,7-tetrahydro-2H-purin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H17 N5 O3 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-16 _chem_comp.pdbx_modified_date 2021-03-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 355.436 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WDM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KG8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WDM C11 C1 C 0 1 N N N 29.340 -0.149 -1.325 3.596 -0.975 0.242 C11 WDM 1 WDM C01 C2 C 0 1 N N N 24.355 6.428 0.081 -6.162 0.623 -0.125 C01 WDM 2 WDM C03 C3 C 0 1 N N N 23.491 4.241 0.933 -4.010 1.729 0.062 C03 WDM 3 WDM C05 C4 C 0 1 N N N 22.478 2.179 1.821 -1.948 3.012 0.251 C05 WDM 4 WDM C06 C5 C 0 1 Y N N 24.796 2.261 0.869 -1.958 0.548 0.079 C06 WDM 5 WDM C08 C6 C 0 1 Y N N 26.389 0.836 0.574 -0.498 -1.060 0.039 C08 WDM 6 WDM C10 C7 C 0 1 N N N 29.071 -0.367 0.159 2.172 -0.486 0.208 C10 WDM 7 WDM C13 C8 C 0 1 N N N 31.882 0.126 -1.121 4.350 1.352 0.441 C13 WDM 8 WDM C14 C9 C 0 1 N N N 33.136 -0.105 -2.062 5.227 2.066 -0.594 C14 WDM 9 WDM C16 C10 C 0 1 N N N 32.041 -0.472 -3.949 6.806 0.259 -0.645 C16 WDM 10 WDM C17 C11 C 0 1 N N N 30.836 0.268 -3.319 6.009 -0.548 0.388 C17 WDM 11 WDM C20 C12 C 0 1 Y N N 25.850 2.971 0.294 -2.664 -0.645 -0.038 C20 WDM 12 WDM C21 C13 C 0 1 N N N 25.742 4.363 0.004 -4.066 -0.608 -0.115 C21 WDM 13 WDM N02 N1 N 0 1 N N N 24.533 4.984 0.342 -4.700 0.581 -0.057 N02 WDM 14 WDM N04 N2 N 0 1 N N N 23.586 2.874 1.214 -2.665 1.740 0.127 N04 WDM 15 WDM N07 N3 N 0 1 Y N N 25.123 0.933 1.053 -0.659 0.245 0.122 N07 WDM 16 WDM N12 N4 N 0 1 N N N 30.598 0.038 -1.875 4.610 -0.094 0.352 N12 WDM 17 WDM N19 N5 N 0 1 Y N N 26.842 2.039 0.109 -1.716 -1.660 -0.062 N19 WDM 18 WDM O15 O1 O 0 1 N N N 32.857 -1.115 -2.962 6.585 1.654 -0.424 O15 WDM 19 WDM O18 O2 O 0 1 N N N 28.357 -0.153 -2.106 3.831 -2.164 0.176 O18 WDM 20 WDM O23 O3 O 0 1 N N N 22.421 4.824 1.230 -4.615 2.783 0.106 O23 WDM 21 WDM S09 S1 S 0 1 N N N 27.291 -0.652 0.578 1.051 -1.899 0.055 S09 WDM 22 WDM S22 S2 S 0 1 N N N 26.929 5.210 -0.663 -4.963 -2.059 -0.259 S22 WDM 23 WDM H013 H1 H 0 0 N N N 23.352 6.739 0.408 -6.551 -0.391 -0.219 H013 WDM 24 WDM H011 H2 H 0 0 N N N 25.115 6.997 0.636 -6.555 1.080 0.783 H011 WDM 25 WDM H012 H3 H 0 0 N N N 24.466 6.622 -0.996 -6.469 1.212 -0.990 H012 WDM 26 WDM H051 H4 H 0 0 N N N 21.651 2.884 1.991 -2.665 3.832 0.273 H051 WDM 27 WDM H052 H5 H 0 0 N N N 22.141 1.372 1.153 -1.366 3.013 1.172 H052 WDM 28 WDM H053 H6 H 0 0 N N N 22.797 1.750 2.782 -1.280 3.137 -0.601 H053 WDM 29 WDM H101 H7 H 0 0 N N N 29.647 -1.245 0.488 1.951 0.056 1.128 H101 WDM 30 WDM H102 H8 H 0 0 N N N 29.415 0.523 0.706 2.037 0.179 -0.646 H102 WDM 31 WDM H132 H9 H 0 0 N N N 31.884 -0.640 -0.331 4.597 1.709 1.441 H132 WDM 32 WDM H131 H10 H 0 0 N N N 31.959 1.124 -0.664 3.299 1.549 0.230 H131 WDM 33 WDM H142 H11 H 0 0 N N N 34.006 -0.388 -1.451 4.890 1.806 -1.598 H142 WDM 34 WDM H141 H12 H 0 0 N N N 33.359 0.823 -2.610 5.152 3.144 -0.453 H141 WDM 35 WDM H161 H13 H 0 0 N N N 31.663 -1.233 -4.647 7.868 0.037 -0.539 H161 WDM 36 WDM H162 H14 H 0 0 N N N 32.656 0.256 -4.498 6.476 -0.007 -1.649 H162 WDM 37 WDM H171 H15 H 0 0 N N N 30.994 1.347 -3.464 6.057 -1.609 0.142 H171 WDM 38 WDM H172 H16 H 0 0 N N N 29.931 -0.046 -3.861 6.423 -0.383 1.383 H172 WDM 39 WDM H191 H18 H 0 0 N N N 27.740 2.211 -0.296 -1.889 -2.611 -0.136 H191 WDM 40 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WDM C16 C17 SING N N 1 WDM C16 O15 SING N N 2 WDM C17 N12 SING N N 3 WDM O15 C14 SING N N 4 WDM O18 C11 DOUB N N 5 WDM C14 C13 SING N N 6 WDM N12 C11 SING N N 7 WDM N12 C13 SING N N 8 WDM C11 C10 SING N N 9 WDM S22 C21 DOUB N N 10 WDM C21 C20 SING N N 11 WDM C21 N02 SING N N 12 WDM C01 N02 SING N N 13 WDM N19 C20 SING Y N 14 WDM N19 C08 SING Y N 15 WDM C10 S09 SING N N 16 WDM C20 C06 DOUB Y N 17 WDM N02 C03 SING N N 18 WDM C08 S09 SING N N 19 WDM C08 N07 DOUB Y N 20 WDM C06 N07 SING Y N 21 WDM C06 N04 SING N N 22 WDM C03 N04 SING N N 23 WDM C03 O23 DOUB N N 24 WDM N04 C05 SING N N 25 WDM C01 H013 SING N N 26 WDM C01 H011 SING N N 27 WDM C01 H012 SING N N 28 WDM C05 H051 SING N N 29 WDM C05 H052 SING N N 30 WDM C05 H053 SING N N 31 WDM C10 H101 SING N N 32 WDM C10 H102 SING N N 33 WDM C13 H132 SING N N 34 WDM C13 H131 SING N N 35 WDM C14 H142 SING N N 36 WDM C14 H141 SING N N 37 WDM C16 H161 SING N N 38 WDM C16 H162 SING N N 39 WDM C17 H171 SING N N 40 WDM C17 H172 SING N N 41 WDM N19 H191 SING N N 42 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WDM SMILES ACDLabs 12.01 "C(CSc2nc1N(C(=O)N(C)C(c1n2)=S)C)(N3CCOCC3)=O" WDM InChI InChI 1.03 "InChI=1S/C13H17N5O3S2/c1-16-10-9(11(22)17(2)13(16)20)14-12(15-10)23-7-8(19)18-3-5-21-6-4-18/h3-7H2,1-2H3,(H,14,15)" WDM InChIKey InChI 1.03 KRPVEFPMIUNCJW-UHFFFAOYSA-N WDM SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)N(C)c2nc([nH]c2C1=S)SCC(=O)N3CCOCC3" WDM SMILES CACTVS 3.385 "CN1C(=O)N(C)c2nc([nH]c2C1=S)SCC(=O)N3CCOCC3" WDM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1c2c([nH]c(n2)SCC(=O)N3CCOCC3)C(=S)N(C1=O)C" WDM SMILES "OpenEye OEToolkits" 2.0.7 "CN1c2c([nH]c(n2)SCC(=O)N3CCOCC3)C(=S)N(C1=O)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WDM "SYSTEMATIC NAME" ACDLabs 12.01 "1,3-dimethyl-8-{[2-(morpholin-4-yl)-2-oxoethyl]sulfanyl}-6-sulfanylidene-1,3,6,7-tetrahydro-2H-purin-2-one" WDM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1,3-dimethyl-8-(2-morpholin-4-yl-2-oxidanylidene-ethyl)sulfanyl-6-sulfanylidene-7~{H}-purin-2-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WDM "Create component" 2020-10-16 RCSB WDM "Initial release" 2021-03-10 RCSB ##