data_WEL # _chem_comp.id WEL _chem_comp.name "(1S,2S)-2-{[N-({2-[(1H-benzimidazol-2-yl)sulfanyl]-2-methylpropoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H37 N5 O8 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-05 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 599.720 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WEL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8E64 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WEL C1 C1 C 0 1 N N N N N N -23.659 -3.191 -1.301 -4.775 -0.362 1.416 C1 WEL 1 WEL O1 O1 O 0 1 N N N N N N -21.826 -3.700 0.677 -2.148 0.484 0.561 O1 WEL 2 WEL C2 C2 C 0 1 N N N N N N -23.388 -2.141 -0.234 -4.558 0.579 0.229 C2 WEL 3 WEL O2 O2 O 0 1 N N N N N N -15.666 -1.428 4.590 2.906 1.370 -1.691 O2 WEL 4 WEL C3 C3 C 0 1 N N N N N N -21.967 -2.328 0.220 -3.278 1.388 0.448 C3 WEL 5 WEL O3 O3 O 0 1 N N N N N N -15.469 -6.825 6.156 4.534 -1.878 1.763 O3 WEL 6 WEL C4 C4 C 0 1 N N N N N N -21.042 -3.878 1.751 -0.938 1.041 0.758 C4 WEL 7 WEL O4 O4 O 0 1 N N N N N N -18.599 -6.208 2.413 2.267 -1.324 0.568 O4 WEL 8 WEL C5 C5 C 0 1 N N S N N N -20.637 -5.540 3.480 1.483 0.864 0.975 C5 WEL 9 WEL O5 O5 O 0 1 N N N N N N -20.295 -3.050 2.219 -0.829 2.249 0.832 O5 WEL 10 WEL C6 C6 C 0 1 N N N N N N -21.328 -6.819 3.952 1.737 1.293 2.422 C6 WEL 11 WEL C7 C7 C 0 1 N N N N N N -22.854 -6.760 3.948 3.088 2.003 2.514 C7 WEL 12 WEL C8 C8 C 0 1 N N N N N N -23.455 -8.041 4.500 3.039 3.300 1.704 C8 WEL 13 WEL C9 C9 C 0 1 N N N N N N -23.355 -5.559 4.732 3.395 2.328 3.977 C9 WEL 14 WEL C10 C10 C 0 1 N N N N N N -19.129 -5.761 3.427 2.527 -0.139 0.558 C10 WEL 15 WEL C11 C11 C 0 1 N N S N N N -17.030 -5.676 4.730 4.729 -0.685 -0.329 C11 WEL 16 WEL C12 C12 C 0 1 N N N N N N -16.271 -4.351 4.831 5.727 0.031 -1.242 C12 WEL 17 WEL C13 C13 C 0 1 N N S N N N -16.170 -3.586 3.515 5.012 0.501 -2.510 C13 WEL 18 WEL C14 C14 C 0 1 N N N N N N -15.476 -2.245 3.666 3.997 1.573 -2.179 C14 WEL 19 WEL C15 C15 C 0 1 N N N N N N -14.691 -3.159 1.665 5.834 2.685 -3.065 C15 WEL 20 WEL C16 C16 C 0 1 N N N N N N -15.347 -4.288 2.441 6.007 1.202 -3.464 C16 WEL 21 WEL C17 C17 C 0 1 N N S N N N -16.827 -6.532 5.970 5.476 -1.316 0.848 C17 WEL 22 WEL C18 C18 C 0 1 N N N N N N -24.310 -2.382 0.952 -4.430 -0.241 -1.056 C18 WEL 23 WEL C19 C19 C 0 1 Y N N N N N -22.485 -0.226 -2.165 -7.268 0.542 -0.151 C19 WEL 24 WEL C20 C20 C 0 1 Y N N N N N -21.431 0.144 -4.011 -9.278 -0.329 -0.484 C20 WEL 25 WEL C21 C21 C 0 1 Y N N N N N -21.032 0.348 -5.328 -10.612 -0.644 -0.693 C21 WEL 26 WEL C22 C22 C 0 1 Y N N N N N -19.694 0.560 -5.567 -10.995 -1.964 -0.815 C22 WEL 27 WEL C23 C23 C 0 1 Y N N N N N -18.757 0.575 -4.533 -10.054 -2.979 -0.729 C23 WEL 28 WEL C24 C24 C 0 1 Y N N N N N -19.129 0.381 -3.221 -8.725 -2.685 -0.522 C24 WEL 29 WEL C25 C25 C 0 1 Y N N N N N -20.480 0.168 -2.983 -8.321 -1.354 -0.393 C25 WEL 30 WEL S1 S1 S 0 1 N N N N N N -23.698 -0.500 -0.943 -5.968 1.706 0.087 S1 WEL 31 WEL N1 N1 N 0 1 N N N N N N -21.193 -5.132 2.206 0.154 0.258 0.872 N1 WEL 32 WEL N2 N2 N 0 1 N N N N N N -18.456 -5.435 4.535 3.749 0.280 0.175 N2 WEL 33 WEL N3 N3 N 0 1 N N N N N N -14.629 -2.085 2.650 4.481 2.784 -2.505 N3 WEL 34 WEL N4 N4 N 0 1 Y N N N N N -22.702 -0.067 -3.476 -8.585 0.860 -0.325 N4 WEL 35 WEL N5 N5 N 0 1 Y N N N N N -21.186 -0.053 -1.821 -7.116 -0.759 -0.194 N5 WEL 36 WEL S2 S2 S 0 1 N Y N N N N -17.488 -5.720 7.451 6.578 -2.620 0.236 S2 WEL 37 WEL H1 H1 H 0 1 N N N N N N -23.475 -4.193 -0.885 -4.867 0.222 2.331 H1 WEL 38 WEL H2 H2 H 0 1 N N N N N N -24.706 -3.117 -1.630 -5.688 -0.938 1.260 H2 WEL 39 WEL H3 H3 H 0 1 N N N N N N -22.992 -3.022 -2.159 -3.927 -1.041 1.501 H3 WEL 40 WEL H4 H4 H 0 1 N N N N N N -21.278 -2.139 -0.617 -3.370 1.973 1.363 H4 WEL 41 WEL H5 H5 H 0 1 N N N N N N -21.742 -1.634 1.043 -3.124 2.059 -0.398 H5 WEL 42 WEL H6 H6 H 0 1 N N N N N N -15.287 -6.907 7.085 3.912 -1.237 2.131 H6 WEL 43 WEL H7 H7 H 0 1 N N N N N N -20.837 -4.754 4.223 1.536 1.736 0.324 H7 WEL 44 WEL H8 H8 H 0 1 N N N N N N -21.015 -7.641 3.291 0.947 1.971 2.744 H8 WEL 45 WEL H9 H9 H 0 1 N N N N N N -20.996 -7.028 4.980 1.744 0.413 3.066 H9 WEL 46 WEL H10 H10 H 0 1 N N N N N N -23.186 -6.649 2.905 3.868 1.355 2.115 H10 WEL 47 WEL H11 H11 H 0 1 N N N N N N -24.552 -7.968 4.484 2.310 3.979 2.148 H11 WEL 48 WEL H12 H12 H 0 1 N N N N N N -23.135 -8.892 3.881 4.023 3.769 1.709 H12 WEL 49 WEL H13 H13 H 0 1 N N N N N N -23.112 -8.191 5.535 2.748 3.076 0.677 H13 WEL 50 WEL H14 H14 H 0 1 N N N N N N -24.455 -5.541 4.713 3.431 1.404 4.555 H14 WEL 51 WEL H15 H15 H 0 1 N N N N N N -23.008 -5.630 5.773 4.358 2.835 4.043 H15 WEL 52 WEL H16 H16 H 0 1 N N N N N N -22.965 -4.636 4.278 2.616 2.977 4.377 H16 WEL 53 WEL H17 H17 H 0 1 N N N N N N -16.638 -6.229 3.863 4.216 -1.464 -0.893 H17 WEL 54 WEL H18 H18 H 0 1 N N N N N N -15.252 -4.564 5.185 6.144 0.892 -0.719 H18 WEL 55 WEL H19 H19 H 0 1 N N N N N N -16.788 -3.712 5.562 6.531 -0.655 -1.510 H19 WEL 56 WEL H20 H20 H 0 1 N N N N N N -17.185 -3.417 3.127 4.530 -0.339 -3.009 H20 WEL 57 WEL H21 H21 H 0 1 N N N N N N -13.684 -3.444 1.325 6.574 2.963 -2.315 H21 WEL 58 WEL H22 H22 H 0 1 N N N N N N -15.302 -2.867 0.798 5.927 3.325 -3.943 H22 WEL 59 WEL H23 H23 H 0 1 N N N N N N -15.995 -4.886 1.784 7.027 0.865 -3.280 H23 WEL 60 WEL H24 H24 H 0 1 N N N N N N -14.587 -4.939 2.897 5.727 1.043 -4.505 H24 WEL 61 WEL H25 H25 H 0 1 N N N N N N -17.407 -7.460 5.857 6.065 -0.552 1.356 H25 WEL 62 WEL H26 H26 H 0 1 N N N N N N -24.118 -1.625 1.726 -5.342 -0.817 -1.212 H26 WEL 63 WEL H27 H27 H 0 1 N N N N N N -25.357 -2.311 0.623 -4.275 0.430 -1.901 H27 WEL 64 WEL H28 H28 H 0 1 N N N N N N -24.122 -3.384 1.365 -3.582 -0.920 -0.971 H28 WEL 65 WEL H29 H29 H 0 1 N N N N N N -21.749 0.340 -6.136 -11.349 0.142 -0.760 H29 WEL 66 WEL H30 H30 H 0 1 N N N N N N -19.360 0.719 -6.582 -12.034 -2.208 -0.977 H30 WEL 67 WEL H31 H31 H 0 1 N N N N N N -17.716 0.743 -4.767 -10.366 -4.009 -0.826 H31 WEL 68 WEL H32 H32 H 0 1 N N N N N N -18.406 0.394 -2.418 -7.998 -3.480 -0.456 H32 WEL 69 WEL H33 H33 H 0 1 N N N N N N -21.698 -5.796 1.656 0.058 -0.708 0.885 H33 WEL 70 WEL H34 H34 H 0 1 N N N N N N -18.962 -4.998 5.278 3.980 1.220 0.233 H34 WEL 71 WEL H35 H35 H 0 1 N N N N N N -14.010 -1.304 2.570 3.998 3.617 -2.385 H35 WEL 72 WEL H36 H36 H 0 1 N N N N N N -23.576 -0.093 -3.961 -8.965 1.753 -0.335 H36 WEL 73 WEL O6 O6 O 0 1 N Y N N N N -16.818 -6.668 8.824 7.239 -3.262 1.317 O6 WEL 74 WEL O7 O7 O 0 1 N Y N N N N ? ? ? 5.939 -3.375 -0.784 O7 WEL 75 WEL O8 O8 O 0 1 N Y N N N N ? ? ? 7.687 -1.871 -0.491 O8 WEL 76 WEL H37 H37 H 0 1 N Y N N N N ? ? ? 8.361 -2.446 -0.877 H37 WEL 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WEL C22 C21 DOUB Y N 1 WEL C22 C23 SING Y N 2 WEL C21 C20 SING Y N 3 WEL C23 C24 DOUB Y N 4 WEL C20 N4 SING Y N 5 WEL C20 C25 DOUB Y N 6 WEL N4 C19 SING Y N 7 WEL C24 C25 SING Y N 8 WEL C25 N5 SING Y N 9 WEL C19 N5 DOUB Y N 10 WEL C19 S1 SING N N 11 WEL C1 C2 SING N N 12 WEL S1 C2 SING N N 13 WEL C2 C3 SING N N 14 WEL C2 C18 SING N N 15 WEL C3 O1 SING N N 16 WEL O1 C4 SING N N 17 WEL C15 C16 SING N N 18 WEL C15 N3 SING N N 19 WEL C4 N1 SING N N 20 WEL C4 O5 DOUB N N 21 WEL N1 C5 SING N N 22 WEL O4 C10 DOUB N N 23 WEL C16 C13 SING N N 24 WEL N3 C14 SING N N 25 WEL C10 C5 SING N N 26 WEL C10 N2 SING N N 27 WEL C5 C6 SING N N 28 WEL C13 C14 SING N N 29 WEL C13 C12 SING N N 30 WEL C14 O2 DOUB N N 31 WEL C7 C6 SING N N 32 WEL C7 C8 SING N N 33 WEL C7 C9 SING N N 34 WEL N2 C11 SING N N 35 WEL C11 C12 SING N N 36 WEL C11 C17 SING N N 37 WEL C17 O3 SING N N 38 WEL C17 S2 SING N N 39 WEL C1 H1 SING N N 40 WEL C1 H2 SING N N 41 WEL C1 H3 SING N N 42 WEL C3 H4 SING N N 43 WEL C3 H5 SING N N 44 WEL O3 H6 SING N N 45 WEL C5 H7 SING N N 46 WEL C6 H8 SING N N 47 WEL C6 H9 SING N N 48 WEL C7 H10 SING N N 49 WEL C8 H11 SING N N 50 WEL C8 H12 SING N N 51 WEL C8 H13 SING N N 52 WEL C9 H14 SING N N 53 WEL C9 H15 SING N N 54 WEL C9 H16 SING N N 55 WEL C11 H17 SING N N 56 WEL C12 H18 SING N N 57 WEL C12 H19 SING N N 58 WEL C13 H20 SING N N 59 WEL C15 H21 SING N N 60 WEL C15 H22 SING N N 61 WEL C16 H23 SING N N 62 WEL C16 H24 SING N N 63 WEL C17 H25 SING N N 64 WEL C18 H26 SING N N 65 WEL C18 H27 SING N N 66 WEL C18 H28 SING N N 67 WEL C21 H29 SING N N 68 WEL C22 H30 SING N N 69 WEL C23 H31 SING N N 70 WEL C24 H32 SING N N 71 WEL N1 H33 SING N N 72 WEL N2 H34 SING N N 73 WEL N3 H35 SING N N 74 WEL N4 H36 SING N N 75 WEL S2 O6 DOUB N N 76 WEL S2 O7 DOUB N N 77 WEL S2 O8 SING N N 78 WEL O8 H37 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WEL SMILES ACDLabs 12.01 "CC(C)CC(NC(=O)OCC(C)(C)Sc1nc2ccccc2[NH]1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O" WEL InChI InChI 1.06 "InChI=1S/C25H37N5O8S2/c1-14(2)11-18(21(32)27-19(22(33)40(35,36)37)12-15-9-10-26-20(15)31)30-24(34)38-13-25(3,4)39-23-28-16-7-5-6-8-17(16)29-23/h5-8,14-15,18-19,22,33H,9-13H2,1-4H3,(H,26,31)(H,27,32)(H,28,29)(H,30,34)(H,35,36,37)/t15-,18-,19-,22-/m0/s1" WEL InChIKey InChI 1.06 NRGPZDKZNYWRRP-BCSOYYNPSA-N WEL SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OCC(C)(C)Sc1[nH]c2ccccc2n1)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O" WEL SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OCC(C)(C)Sc1[nH]c2ccccc2n1)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O" WEL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@@H](O)S(=O)(=O)O)NC(=O)OCC(C)(C)Sc2[nH]c3ccccc3n2" WEL SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC(C)(C)Sc2[nH]c3ccccc3n2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WEL "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-2-{[N-({2-[(1H-benzimidazol-2-yl)sulfanyl]-2-methylpropoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" WEL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S},2~{S})-2-[[(2~{S})-2-[[2-(1~{H}-benzimidazol-2-ylsulfanyl)-2-methyl-propoxy]carbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WEL "Create component" 2022-09-05 RCSB WEL "Initial release" 2022-09-14 RCSB WEL "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id WEL _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C17 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #