data_WFH # _chem_comp.id WFH _chem_comp.name "(2S)-2-{[(R)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]amino}propanoic acid (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H19 N6 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;Alanyl-5'-O-adenosine phosphoramidate ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-02 _chem_comp.pdbx_modified_date 2024-10-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 418.299 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WFH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UAX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WFH C8 C1 C 0 1 Y N N N N N -38.188 -12.479 16.901 1.999 -1.137 -0.477 C8 WFH 1 WFH C6 C2 C 0 1 Y N N N N N -36.782 -14.473 14.441 5.452 -1.716 0.155 C6 WFH 2 WFH C4 C3 C 0 1 Y N N N N N -36.707 -12.248 15.302 3.721 -0.053 0.373 C4 WFH 3 WFH OA O1 O 0 1 N N N N N N -35.180 -14.443 22.640 -3.030 -2.501 -1.976 OA WFH 4 WFH C C4 C 0 1 N N N N N N -35.697 -13.400 23.024 -2.896 -2.747 -0.800 C WFH 5 WFH O O2 O 0 1 N N N N N N -35.048 -12.328 23.237 -2.146 -3.792 -0.415 O WFH 6 WFH CA C5 C 0 1 N N S N N N -37.174 -13.528 23.190 -3.573 -1.883 0.232 CA WFH 7 WFH CB C6 C 0 1 N N N N N N -37.561 -14.755 24.013 -4.530 -2.738 1.066 CB WFH 8 WFH N N1 N 0 1 N N N N N N -37.691 -13.664 21.836 -4.327 -0.817 -0.440 N WFH 9 WFH P P1 P 0 1 N N N N N N -38.732 -12.509 21.323 -4.290 0.606 0.458 P WFH 10 WFH O1P O3 O 0 1 N N N N N N -39.626 -13.028 20.056 -5.059 1.655 -0.249 O1P WFH 11 WFH O2P O4 O 0 1 N N N N N N -39.557 -12.249 22.584 -4.943 0.345 1.906 O2P WFH 12 WFH "O5'" O5 O 0 1 N N N N N N -37.982 -11.119 20.960 -2.764 1.088 0.637 "O5'" WFH 13 WFH "C5'" C7 C 0 1 N N N N N N -37.044 -10.984 19.903 -2.010 1.693 -0.416 "C5'" WFH 14 WFH "C4'" C8 C 0 1 N N R N N N -37.177 -9.717 19.043 -0.605 2.027 0.089 "C4'" WFH 15 WFH "C3'" C9 C 0 1 N N S N N N -38.578 -9.332 18.499 0.200 2.760 -1.006 "C3'" WFH 16 WFH "O3'" O6 O 0 1 N N N N N N -38.926 -7.999 18.841 0.177 4.171 -0.784 "O3'" WFH 17 WFH "C2'" C10 C 0 1 N N R N N N -38.523 -9.456 16.969 1.635 2.210 -0.849 "C2'" WFH 18 WFH "O2'" O7 O 0 1 N N N N N N -38.670 -8.190 16.279 2.544 3.265 -0.528 "O2'" WFH 19 WFH "C1'" C11 C 0 1 N N R N N N -37.156 -10.124 16.675 1.527 1.209 0.323 "C1'" WFH 20 WFH "O4'" O8 O 0 1 N N N N N N -36.355 -9.969 17.881 0.137 0.815 0.347 "O4'" WFH 21 WFH N9 N2 N 0 1 Y N N N N N -37.331 -11.587 16.293 2.384 0.046 0.081 N9 WFH 22 WFH C5 C12 C 0 1 Y N N N N N -37.220 -13.555 15.332 4.111 -1.341 -0.030 C5 WFH 23 WFH N7 N3 N 0 1 Y N N N N N -38.126 -13.705 16.309 3.013 -1.951 -0.538 N7 WFH 24 WFH N3 N4 N 0 1 Y N N N N N -35.767 -11.887 14.362 4.626 0.757 0.911 N3 WFH 25 WFH C2 C13 C 0 1 Y N N N N N -35.402 -12.847 13.498 5.872 0.363 1.065 C2 WFH 26 WFH N1 N5 N 0 1 Y N N N N N -35.877 -14.122 13.512 6.286 -0.837 0.702 N1 WFH 27 WFH N6 N6 N 0 1 N N N N N N -37.298 -15.709 14.557 5.895 -2.972 -0.223 N6 WFH 28 WFH H1 H1 H 0 1 N N N N N N -38.826 -12.238 17.738 0.999 -1.367 -0.814 H1 WFH 29 WFH H2 H2 H 0 1 N N N N N N -34.127 -12.473 23.053 -1.732 -4.317 -1.113 H2 WFH 30 WFH H3 H3 H 0 1 N N N N N N -37.578 -12.623 23.668 -2.820 -1.440 0.884 H3 WFH 31 WFH H4 H4 H 0 1 N N N N N N -37.169 -14.650 25.035 -5.282 -3.181 0.414 H4 WFH 32 WFH H5 H5 H 0 1 N N N N N N -38.657 -14.842 24.048 -3.969 -3.529 1.564 H5 WFH 33 WFH H6 H6 H 0 1 N N N N N N -37.136 -15.657 23.549 -5.019 -2.113 1.813 H6 WFH 34 WFH H7 H7 H 0 1 N N N N N N -38.163 -14.544 21.780 -5.277 -1.105 -0.621 H7 WFH 35 WFH H8 H8 H 0 1 N N N N N N -40.471 -12.439 22.410 -4.489 -0.332 2.426 H8 WFH 36 WFH H9 H9 H 0 1 N N N N N N -37.156 -11.854 19.240 -1.940 1.002 -1.256 H9 WFH 37 WFH H10 H10 H 0 1 N N N N N N -36.036 -10.987 20.344 -2.507 2.608 -0.739 H10 WFH 38 WFH H11 H11 H 0 1 N N N N N N -36.775 -8.863 19.608 -0.662 2.636 0.991 H11 WFH 39 WFH H12 H12 H 0 1 N N N N N N -39.321 -10.042 18.892 -0.196 2.524 -1.994 H12 WFH 40 WFH H13 H13 H 0 1 N N N N N N -38.962 -7.913 19.786 0.668 4.681 -1.443 H13 WFH 41 WFH H14 H14 H 0 1 N N N N N N -39.318 -10.145 16.648 1.951 1.700 -1.759 H14 WFH 42 WFH H15 H15 H 0 1 N N N N N N -39.518 -7.814 16.484 2.604 3.952 -1.206 H15 WFH 43 WFH H16 H16 H 0 1 N N N N N N -36.678 -9.592 15.839 1.799 1.693 1.261 H16 WFH 44 WFH H17 H17 H 0 1 N N N N N N -34.680 -12.589 12.737 6.583 1.046 1.506 H17 WFH 45 WFH H18 H18 H 0 1 N N N N N N -36.904 -16.302 13.855 5.277 -3.605 -0.621 H18 WFH 46 WFH H19 H19 H 0 1 N N N N N N -37.083 -16.076 15.462 6.824 -3.219 -0.090 H19 WFH 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WFH C2 N1 DOUB Y N 1 WFH C2 N3 SING Y N 2 WFH N1 C6 SING Y N 3 WFH N3 C4 DOUB Y N 4 WFH C6 N6 SING N N 5 WFH C6 C5 DOUB Y N 6 WFH C4 C5 SING Y N 7 WFH C4 N9 SING Y N 8 WFH C5 N7 SING Y N 9 WFH "O2'" "C2'" SING N N 10 WFH N9 "C1'" SING N N 11 WFH N9 C8 SING Y N 12 WFH N7 C8 DOUB Y N 13 WFH "C1'" "C2'" SING N N 14 WFH "C1'" "O4'" SING N N 15 WFH "C2'" "C3'" SING N N 16 WFH "O4'" "C4'" SING N N 17 WFH "C3'" "O3'" SING N N 18 WFH "C3'" "C4'" SING N N 19 WFH "C4'" "C5'" SING N N 20 WFH "C5'" "O5'" SING N N 21 WFH O1P P DOUB N N 22 WFH "O5'" P SING N N 23 WFH P N SING N N 24 WFH P O2P SING N N 25 WFH N CA SING N N 26 WFH OA C DOUB N N 27 WFH C CA SING N N 28 WFH C O SING N N 29 WFH CA CB SING N N 30 WFH C8 H1 SING N N 31 WFH O H2 SING N N 32 WFH CA H3 SING N N 33 WFH CB H4 SING N N 34 WFH CB H5 SING N N 35 WFH CB H6 SING N N 36 WFH N H7 SING N N 37 WFH O2P H8 SING N N 38 WFH "C5'" H9 SING N N 39 WFH "C5'" H10 SING N N 40 WFH "C4'" H11 SING N N 41 WFH "C3'" H12 SING N N 42 WFH "O3'" H13 SING N N 43 WFH "C2'" H14 SING N N 44 WFH "O2'" H15 SING N N 45 WFH "C1'" H16 SING N N 46 WFH C2 H17 SING N N 47 WFH N6 H18 SING N N 48 WFH N6 H19 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WFH SMILES ACDLabs 12.01 "O=C(O)C(C)NP(=O)(O)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1O" WFH InChI InChI 1.06 "InChI=1S/C13H19N6O8P/c1-5(13(22)23)18-28(24,25)26-2-6-8(20)9(21)12(27-6)19-4-17-7-10(14)15-3-16-11(7)19/h3-6,8-9,12,20-21H,2H2,1H3,(H,22,23)(H2,14,15,16)(H2,18,24,25)/t5-,6+,8+,9+,12+/m0/s1" WFH InChIKey InChI 1.06 FRQHIZTYMNUOJX-MACXSXHHSA-N WFH SMILES_CANONICAL CACTVS 3.385 "C[C@H](N[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)C(O)=O" WFH SMILES CACTVS 3.385 "C[CH](N[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)C(O)=O" WFH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(=O)O)NP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" WFH SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)O)NP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WFH "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-{[(R)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]amino}propanoic acid (non-preferred name)" WFH "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]amino]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WFH "Create component" 2023-10-02 RCSB WFH "Initial release" 2024-10-16 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id WFH _pdbx_chem_comp_synonyms.name ;Alanyl-5'-O-adenosine phosphoramidate ; _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #