data_WFL # _chem_comp.id WFL _chem_comp.name "5'-O-[(R)-(butylamino)(hydroxy)phosphoryl]adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H23 N6 O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-02 _chem_comp.pdbx_modified_date 2024-10-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 402.343 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WFL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UB1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WFL O2P O1 O 0 1 N N N N N N -40.194 -14.011 22.819 4.928 2.079 0.383 O2P WFL 1 WFL P P1 P 0 1 N N N N N N -38.971 -13.120 22.638 4.270 0.910 -0.242 P WFL 2 WFL O1P O2 O 0 1 N N N N N N -38.432 -12.745 24.003 5.006 0.559 -1.630 O1P WFL 3 WFL N N1 N 0 1 N N N N N N -37.790 -13.885 21.730 4.372 -0.411 0.797 N WFL 4 WFL CA C1 C 0 1 N N N N N N -36.693 -14.623 22.335 3.728 -1.593 0.208 CA WFL 5 WFL CB C2 C 0 1 N N N N N N -35.495 -13.747 22.595 4.627 -2.815 0.406 CB WFL 6 WFL CC C3 C 0 1 N N N N N N -35.596 -12.234 22.644 3.957 -4.047 -0.206 CC WFL 7 WFL CD C4 C 0 1 N N N N N N -34.404 -11.346 22.960 4.856 -5.268 -0.008 CD WFL 8 WFL "O5'" O3 O 0 1 N N N N N N -39.398 -11.786 21.838 2.723 1.252 -0.525 "O5'" WFL 9 WFL "C5'" C5 C 0 1 N N N N N N -38.705 -11.371 20.660 1.880 1.898 0.432 "C5'" WFL 10 WFL "C4'" C6 C 0 1 N N R N N N -39.415 -11.829 19.381 0.479 2.070 -0.157 "C4'" WFL 11 WFL "C3'" C7 C 0 1 N N S N N N -40.265 -13.106 19.470 -0.415 2.877 0.810 "C3'" WFL 12 WFL "O3'" O4 O 0 1 N N N N N N -41.669 -12.800 19.509 -0.473 4.249 0.413 "O3'" WFL 13 WFL "C2'" C8 C 0 1 N N R N N N -39.913 -13.920 18.235 -1.805 2.216 0.677 "C2'" WFL 14 WFL "O2'" O5 O 0 1 N N N N N N -41.109 -14.434 17.623 -2.764 3.160 0.196 "O2'" WFL 15 WFL "C1'" C9 C 0 1 N N R N N N -39.142 -12.906 17.383 -1.586 1.088 -0.356 "C1'" WFL 16 WFL "O4'" O6 O 0 1 N N N N N N -38.451 -12.097 18.345 -0.175 0.789 -0.283 "O4'" WFL 17 WFL N9 N2 N 0 1 Y N N N N N -38.302 -13.432 16.242 -2.377 -0.092 0.003 N9 WFL 18 WFL C4 C10 C 0 1 Y N N N N N -37.301 -12.774 15.600 -3.692 -0.317 -0.318 C4 WFL 19 WFL C5 C11 C 0 1 Y N N N N N -36.858 -13.612 14.587 -4.017 -1.568 0.233 C5 WFL 20 WFL N7 N3 N 0 1 Y N N N N N -37.576 -14.754 14.607 -2.904 -2.033 0.850 N7 WFL 21 WFL C8 C12 C 0 1 Y N N N N N -38.479 -14.623 15.622 -1.939 -1.171 0.712 C8 WFL 22 WFL N3 N4 N 0 1 Y N N N N N -36.663 -11.566 15.757 -4.624 0.357 -0.984 N3 WFL 23 WFL C2 C13 C 0 1 Y N N N N N -35.643 -11.188 14.945 -5.835 -0.136 -1.128 C2 WFL 24 WFL N1 N5 N 0 1 Y N N N N N -35.208 -11.972 13.942 -6.187 -1.307 -0.628 N1 WFL 25 WFL C6 C14 C 0 1 Y N N N N N -35.821 -13.195 13.775 -5.325 -2.051 0.056 C6 WFL 26 WFL N6 N6 N 0 1 N N N N N N -35.466 -14.154 12.764 -5.703 -3.276 0.576 N6 WFL 27 WFL H1 H1 H 0 1 N N N N N N -38.970 -13.144 24.677 4.626 -0.199 -2.095 H1 WFL 28 WFL H2 H2 H 0 1 N N N N N N -37.369 -13.174 21.167 3.974 -0.194 1.698 H2 WFL 29 WFL H3 H3 H 0 1 N N N N N N -37.036 -15.048 23.290 2.769 -1.765 0.697 H3 WFL 30 WFL H4 H4 H 0 1 N N N N N N -36.397 -15.437 21.657 3.569 -1.428 -0.857 H4 WFL 31 WFL H5 H5 H 0 1 N N N N N N -35.092 -14.060 23.570 5.586 -2.643 -0.082 H5 WFL 32 WFL H6 H6 H 0 1 N N N N N N -35.957 -11.920 21.654 2.997 -4.219 0.282 H6 WFL 33 WFL H7 H7 H 0 1 N N N N N N -34.716 -10.291 22.939 5.815 -5.096 -0.497 H7 WFL 34 WFL H8 H8 H 0 1 N N N N N N -34.017 -11.594 23.959 5.015 -5.433 1.057 H8 WFL 35 WFL H9 H9 H 0 1 N N N N N N -33.616 -11.510 22.211 4.378 -6.146 -0.445 H9 WFL 36 WFL H10 H10 H 0 1 N N N N N N -37.692 -11.799 20.676 1.823 1.289 1.334 H10 WFL 37 WFL H11 H11 H 0 1 N N N N N N -38.640 -10.273 20.655 2.294 2.875 0.679 H11 WFL 38 WFL H12 H12 H 0 1 N N N N N N -40.074 -11.011 19.052 0.534 2.567 -1.126 H12 WFL 39 WFL H13 H13 H 0 1 N N N N N N -39.972 -13.668 20.369 -0.046 2.792 1.832 H13 WFL 40 WFL H14 H14 H 0 1 N N N N N N -41.861 -12.292 20.289 -1.021 4.801 0.986 H14 WFL 41 WFL H15 H15 H 0 1 N N N N N N -39.240 -14.742 18.519 -2.125 1.802 1.633 H15 WFL 42 WFL H16 H16 H 0 1 N N N N N N -41.526 -15.052 18.212 -2.896 3.919 0.779 H16 WFL 43 WFL H17 H17 H 0 1 N N N N N N -39.907 -12.264 16.922 -1.850 1.432 -1.356 H17 WFL 44 WFL H18 H18 H 0 1 N N N N N N -39.223 -15.359 15.890 -0.941 -1.290 1.106 H18 WFL 45 WFL H19 H19 H 0 1 N N N N N N -35.168 -10.232 15.109 -6.569 0.437 -1.675 H19 WFL 46 WFL H20 H20 H 0 1 N N N N N N -34.714 -13.794 12.212 -6.607 -3.602 0.442 H20 WFL 47 WFL H21 H21 H 0 1 N N N N N N -35.180 -15.007 13.200 -5.064 -3.810 1.074 H21 WFL 48 WFL H22 H22 H 0 1 N N N N N N -34.766 -13.981 21.805 4.786 -2.980 1.472 H22 WFL 49 WFL H23 H23 H 0 1 N N N N N N -36.359 -12.003 23.402 3.797 -3.881 -1.272 H23 WFL 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WFL N6 C6 SING N N 1 WFL C6 N1 DOUB Y N 2 WFL C6 C5 SING Y N 3 WFL N1 C2 SING Y N 4 WFL C5 N7 SING Y N 5 WFL C5 C4 DOUB Y N 6 WFL N7 C8 DOUB Y N 7 WFL C2 N3 DOUB Y N 8 WFL C4 N3 SING Y N 9 WFL C4 N9 SING Y N 10 WFL C8 N9 SING Y N 11 WFL N9 "C1'" SING N N 12 WFL "C1'" "C2'" SING N N 13 WFL "C1'" "O4'" SING N N 14 WFL "O2'" "C2'" SING N N 15 WFL "C2'" "C3'" SING N N 16 WFL "O4'" "C4'" SING N N 17 WFL "C4'" "C3'" SING N N 18 WFL "C4'" "C5'" SING N N 19 WFL "C3'" "O3'" SING N N 20 WFL "C5'" "O5'" SING N N 21 WFL N CA SING N N 22 WFL N P SING N N 23 WFL "O5'" P SING N N 24 WFL CA CB SING N N 25 WFL CB CC SING N N 26 WFL P O2P DOUB N N 27 WFL P O1P SING N N 28 WFL CC CD SING N N 29 WFL O1P H1 SING N N 30 WFL N H2 SING N N 31 WFL CA H3 SING N N 32 WFL CA H4 SING N N 33 WFL CB H5 SING N N 34 WFL CC H6 SING N N 35 WFL CD H7 SING N N 36 WFL CD H8 SING N N 37 WFL CD H9 SING N N 38 WFL "C5'" H10 SING N N 39 WFL "C5'" H11 SING N N 40 WFL "C4'" H12 SING N N 41 WFL "C3'" H13 SING N N 42 WFL "O3'" H14 SING N N 43 WFL "C2'" H15 SING N N 44 WFL "O2'" H16 SING N N 45 WFL "C1'" H17 SING N N 46 WFL C8 H18 SING N N 47 WFL C2 H19 SING N N 48 WFL N6 H20 SING N N 49 WFL N6 H21 SING N N 50 WFL CB H22 SING N N 51 WFL CC H23 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WFL SMILES ACDLabs 12.01 "CCCCNP(=O)(O)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1O" WFL InChI InChI 1.06 "InChI=1S/C14H23N6O6P/c1-2-3-4-19-27(23,24)25-5-8-10(21)11(22)14(26-8)20-7-18-9-12(15)16-6-17-13(9)20/h6-8,10-11,14,21-22H,2-5H2,1H3,(H2,15,16,17)(H2,19,23,24)/t8-,10-,11-,14-/m1/s1" WFL InChIKey InChI 1.06 JCDWYZKYCCUIPS-IDTAVKCVSA-N WFL SMILES_CANONICAL CACTVS 3.385 "CCCCN[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" WFL SMILES CACTVS 3.385 "CCCCN[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" WFL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCNP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" WFL SMILES "OpenEye OEToolkits" 2.0.7 "CCCCNP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WFL "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-[(R)-(butylamino)(hydroxy)phosphoryl]adenosine" WFL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-~{N}-butyl-phosphonamidic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WFL "Create component" 2023-10-02 RCSB WFL "Initial release" 2024-10-16 RCSB #