data_WFR # _chem_comp.id WFR _chem_comp.name "propan-2-yl (2S)-2-{[(S)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-4-ethynyl-3-hydroxy-4-methyloxolan-2-yl]methoxy}(phenoxy)phosphoryl]amino}propanoate (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H30 N3 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-06 _chem_comp.pdbx_modified_date 2022-12-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 535.483 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WFR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8E57 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WFR C02 C1 C 0 1 N N R 146.791 160.970 149.139 0.108 1.880 -0.588 C02 WFR 1 WFR C03 C2 C 0 1 N N S 146.745 159.762 150.314 1.003 2.590 -1.627 C03 WFR 2 WFR C04 C3 C 0 1 N N R 145.270 159.493 150.452 2.424 2.495 -1.026 C04 WFR 3 WFR C05 C4 C 0 1 N N R 144.826 159.682 148.851 2.219 1.738 0.304 C05 WFR 4 WFR C07 C5 C 0 1 N N N 148.200 161.043 148.432 -0.997 1.087 -1.290 C07 WFR 5 WFR C09 C6 C 0 1 N N N 144.638 160.583 151.417 2.971 3.839 -0.779 C09 WFR 6 WFR C10 C7 C 0 1 N N N 145.136 157.995 150.934 3.347 1.705 -1.956 C10 WFR 7 WFR C11 C8 C 0 1 N N N 143.547 157.545 147.997 4.449 1.296 1.164 C11 WFR 8 WFR C13 C9 C 0 1 N N N 144.817 155.781 146.542 5.456 -0.808 1.030 C13 WFR 9 WFR C14 C10 C 0 1 N N N 146.053 156.695 146.686 4.298 -1.309 0.388 C14 WFR 10 WFR C15 C11 C 0 1 N N N 146.026 157.896 147.405 3.258 -0.477 0.166 C15 WFR 11 WFR C23 C12 C 0 1 N N S 150.196 165.682 147.484 -2.036 -2.612 -0.038 C23 WFR 12 WFR C24 C13 C 0 1 N N N 151.347 164.724 146.869 -0.913 -3.478 -0.548 C24 WFR 13 WFR C25 C14 C 0 1 N N N 150.607 166.008 148.957 -3.086 -3.488 0.648 C25 WFR 14 WFR C28 C15 C 0 1 N N N 152.135 162.433 147.222 0.865 -5.038 -0.253 C28 WFR 15 WFR C29 C16 C 0 1 N N N 152.444 162.790 148.731 2.165 -4.232 -0.266 C29 WFR 16 WFR C30 C17 C 0 1 N N N 151.622 160.935 147.132 1.052 -6.295 0.599 C30 WFR 17 WFR C31 C18 C 0 1 Y N N 145.355 163.758 147.595 -4.668 0.699 0.982 C31 WFR 18 WFR C32 C19 C 0 1 Y N N 145.760 163.293 146.211 -3.957 1.528 1.838 C32 WFR 19 WFR C33 C20 C 0 1 Y N N 144.742 162.930 145.180 -4.500 2.732 2.241 C33 WFR 20 WFR C34 C21 C 0 1 Y N N 143.301 163.013 145.485 -5.751 3.112 1.793 C34 WFR 21 WFR C35 C22 C 0 1 Y N N 142.853 163.460 146.827 -6.463 2.288 0.941 C35 WFR 22 WFR C36 C23 C 0 1 Y N N 143.859 163.832 147.884 -5.924 1.083 0.534 C36 WFR 23 WFR C37 C24 C 0 1 N N N 144.153 161.415 152.150 3.407 4.911 -0.582 C37 WFR 24 WFR N06 N1 N 0 1 N N N 144.828 158.372 148.080 3.343 0.832 0.554 N06 WFR 25 WFR N12 N2 N 0 1 N N N 143.581 156.277 147.235 5.498 0.488 1.402 N12 WFR 26 WFR N22 N3 N 0 1 N N N 148.757 165.121 147.388 -2.653 -1.897 -1.163 N22 WFR 27 WFR O01 O1 O 0 1 N N N 145.761 160.638 148.206 0.998 0.988 0.118 O01 WFR 28 WFR O08 O2 O 0 1 N N N 147.196 160.189 151.584 0.613 3.957 -1.773 O08 WFR 29 WFR O16 O3 O 0 1 N N N 144.814 154.724 145.916 6.407 -1.539 1.240 O16 WFR 30 WFR O17 O4 O 0 1 N N N 142.511 157.919 148.557 4.503 2.463 1.501 O17 WFR 31 WFR O18 O5 O 0 1 N N N 148.382 162.251 147.659 -1.880 0.534 -0.313 O18 WFR 32 WFR O20 O6 O 0 1 N N N 146.331 164.112 148.612 -4.134 -0.484 0.580 O20 WFR 33 WFR O21 O7 O 0 1 N N N 148.646 163.849 149.751 -3.893 0.275 -1.815 O21 WFR 34 WFR O26 O8 O 0 1 N N N 152.421 165.222 146.580 -0.654 -3.499 -1.728 O26 WFR 35 WFR O27 O9 O 0 1 N N N 151.137 163.351 146.666 -0.201 -4.227 0.309 O27 WFR 36 WFR P19 P1 P 0 1 N N S 148.066 163.864 148.389 -3.162 -0.362 -0.698 P19 WFR 37 WFR H1 H1 H 0 1 N N N 146.586 161.931 149.634 -0.325 2.606 0.099 H1 WFR 38 WFR H2 H2 H 0 1 N N N 147.283 158.878 149.942 0.959 2.075 -2.586 H2 WFR 39 WFR H3 H3 H 0 1 N N N 143.809 160.101 148.842 2.109 2.442 1.129 H3 WFR 40 WFR H4 H4 H 0 1 N N N 148.300 160.178 147.760 -1.555 1.750 -1.952 H4 WFR 41 WFR H5 H5 H 0 1 N N N 148.982 161.000 149.204 -0.551 0.282 -1.875 H5 WFR 42 WFR H6 H6 H 0 1 N N N 145.438 157.920 151.989 3.360 2.174 -2.940 H6 WFR 43 WFR H7 H7 H 0 1 N N N 144.091 157.668 150.828 4.356 1.696 -1.544 H7 WFR 44 WFR H8 H8 H 0 1 N N N 145.785 157.353 150.321 2.982 0.681 -2.046 H8 WFR 45 WFR H9 H9 H 0 1 N N N 146.976 156.396 146.213 4.247 -2.343 0.082 H9 WFR 46 WFR H10 H10 H 0 1 N N N 146.926 158.490 147.461 2.367 -0.841 -0.323 H10 WFR 47 WFR H11 H11 H 0 1 N N N 150.226 166.623 146.916 -1.641 -1.890 0.678 H11 WFR 48 WFR H12 H12 H 0 1 N N N 149.848 166.660 149.414 -2.651 -3.949 1.535 H12 WFR 49 WFR H13 H13 H 0 1 N N N 150.682 165.073 149.532 -3.938 -2.874 0.938 H13 WFR 50 WFR H14 H14 H 0 1 N N N 151.581 166.520 148.961 -3.416 -4.265 -0.041 H14 WFR 51 WFR H15 H15 H 0 1 N N N 153.072 162.511 146.650 0.605 -5.325 -1.272 H15 WFR 52 WFR H16 H16 H 0 1 N N N 153.194 162.090 149.128 2.965 -4.840 -0.688 H16 WFR 53 WFR H17 H17 H 0 1 N N N 152.833 163.817 148.792 2.031 -3.336 -0.873 H17 WFR 54 WFR H18 H18 H 0 1 N N N 151.520 162.712 149.323 2.425 -3.945 0.753 H18 WFR 55 WFR H19 H19 H 0 1 N N N 152.382 160.261 147.553 1.312 -6.008 1.618 H19 WFR 56 WFR H20 H20 H 0 1 N N N 150.686 160.833 147.701 0.126 -6.869 0.608 H20 WFR 57 WFR H21 H21 H 0 1 N N N 151.441 160.672 146.079 1.853 -6.903 0.177 H21 WFR 58 WFR H22 H22 H 0 1 N N N 146.809 163.222 145.964 -2.979 1.231 2.188 H22 WFR 59 WFR H23 H23 H 0 1 N N N 145.064 162.604 144.202 -3.946 3.378 2.907 H23 WFR 60 WFR H24 H24 H 0 1 N N N 142.573 162.749 144.732 -6.174 4.054 2.110 H24 WFR 61 WFR H25 H25 H 0 1 N N N 141.797 163.519 147.047 -7.440 2.587 0.592 H25 WFR 62 WFR H26 H26 H 0 1 N N N 143.518 164.154 148.857 -6.478 0.442 -0.135 H26 WFR 63 WFR H27 H27 H 0 1 N N N 143.728 162.144 152.792 3.797 5.870 -0.406 H27 WFR 64 WFR H28 H28 H 0 1 N N N 142.747 155.728 147.179 6.288 0.838 1.842 H28 WFR 65 WFR H29 H29 H 0 1 N N N 148.160 165.913 147.515 -2.022 -1.846 -1.949 H29 WFR 66 WFR H30 H30 H 0 1 N N N 147.145 159.466 152.198 -0.293 4.075 -2.090 H30 WFR 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WFR C33 C34 DOUB Y N 1 WFR C33 C32 SING Y N 2 WFR C34 C35 SING Y N 3 WFR O16 C13 DOUB N N 4 WFR C32 C31 DOUB Y N 5 WFR C13 C14 SING N N 6 WFR C13 N12 SING N N 7 WFR O26 C24 DOUB N N 8 WFR O27 C24 SING N N 9 WFR O27 C28 SING N N 10 WFR C14 C15 DOUB N N 11 WFR C35 C36 DOUB Y N 12 WFR C24 C23 SING N N 13 WFR C30 C28 SING N N 14 WFR C28 C29 SING N N 15 WFR N12 C11 SING N N 16 WFR N22 C23 SING N N 17 WFR N22 P19 SING N N 18 WFR C15 N06 SING N N 19 WFR C23 C25 SING N N 20 WFR C31 C36 SING Y N 21 WFR C31 O20 SING N N 22 WFR O18 P19 SING N N 23 WFR O18 C07 SING N N 24 WFR C11 N06 SING N N 25 WFR C11 O17 DOUB N N 26 WFR N06 C05 SING N N 27 WFR O01 C05 SING N N 28 WFR O01 C02 SING N N 29 WFR P19 O20 SING N N 30 WFR P19 O21 DOUB N N 31 WFR C07 C02 SING N N 32 WFR C05 C04 SING N N 33 WFR C02 C03 SING N N 34 WFR C03 C04 SING N N 35 WFR C03 O08 SING N N 36 WFR C04 C10 SING N N 37 WFR C04 C09 SING N N 38 WFR C09 C37 TRIP N N 39 WFR C02 H1 SING N N 40 WFR C03 H2 SING N N 41 WFR C05 H3 SING N N 42 WFR C07 H4 SING N N 43 WFR C07 H5 SING N N 44 WFR C10 H6 SING N N 45 WFR C10 H7 SING N N 46 WFR C10 H8 SING N N 47 WFR C14 H9 SING N N 48 WFR C15 H10 SING N N 49 WFR C23 H11 SING N N 50 WFR C25 H12 SING N N 51 WFR C25 H13 SING N N 52 WFR C25 H14 SING N N 53 WFR C28 H15 SING N N 54 WFR C29 H16 SING N N 55 WFR C29 H17 SING N N 56 WFR C29 H18 SING N N 57 WFR C30 H19 SING N N 58 WFR C30 H20 SING N N 59 WFR C30 H21 SING N N 60 WFR C32 H22 SING N N 61 WFR C33 H23 SING N N 62 WFR C34 H24 SING N N 63 WFR C35 H25 SING N N 64 WFR C36 H26 SING N N 65 WFR C37 H27 SING N N 66 WFR N12 H28 SING N N 67 WFR N22 H29 SING N N 68 WFR O08 H30 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WFR SMILES ACDLabs 12.01 "CC(C)OC(=O)C(C)NP(=O)(Oc1ccccc1)OCC1OC(N2C=CC(=O)NC2=O)C(C)(C#C)C1O" WFR InChI InChI 1.06 "InChI=1S/C24H30N3O9P/c1-6-24(5)20(29)18(35-22(24)27-13-12-19(28)25-23(27)31)14-33-37(32,36-17-10-8-7-9-11-17)26-16(4)21(30)34-15(2)3/h1,7-13,15-16,18,20,22,29H,14H2,2-5H3,(H,26,32)(H,25,28,31)/t16-,18+,20+,22+,24+,37-/m0/s1" WFR InChIKey InChI 1.06 HVOMZYITEDRMBB-XSZHHMMYSA-N WFR SMILES_CANONICAL CACTVS 3.385 "CC(C)OC(=O)[C@H](C)N[P@](=O)(OC[C@H]1O[C@@H](N2C=CC(=O)NC2=O)[C@](C)(C#C)[C@@H]1O)Oc3ccccc3" WFR SMILES CACTVS 3.385 "CC(C)OC(=O)[CH](C)N[P](=O)(OC[CH]1O[CH](N2C=CC(=O)NC2=O)[C](C)(C#C)[CH]1O)Oc3ccccc3" WFR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(=O)OC(C)C)N[P@](=O)(OC[C@@H]1[C@H]([C@@]([C@@H](O1)N2C=CC(=O)NC2=O)(C)C#C)O)Oc3ccccc3" WFR SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)OC(=O)C(C)NP(=O)(OCC1C(C(C(O1)N2C=CC(=O)NC2=O)(C)C#C)O)Oc3ccccc3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WFR "SYSTEMATIC NAME" ACDLabs 12.01 "propan-2-yl (2S)-2-{[(S)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-4-ethynyl-3-hydroxy-4-methyloxolan-2-yl]methoxy}(phenoxy)phosphoryl]amino}propanoate (non-preferred name)" WFR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "propan-2-yl (2~{S})-2-[[[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-4-ethynyl-4-methyl-3-oxidanyl-oxolan-2-yl]methoxy-phenoxy-phosphoryl]amino]propanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WFR "Create component" 2022-09-06 RCSB WFR "Initial release" 2022-12-07 RCSB #