data_WFU # _chem_comp.id WFU _chem_comp.name "(2S)-2-{[(S)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]amino}pentanedioic acid (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H21 N6 O10 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;Glutamyl-5'-O-adenosine phosphoramidate ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-03 _chem_comp.pdbx_modified_date 2024-10-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 476.335 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WFU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UAZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WFU P P1 P 0 1 N N N N N N 9.444 -8.755 -34.596 -2.720 2.080 0.688 P WFU 1 WFU N1 N1 N 0 1 Y N N N N N 10.421 -6.487 -41.421 7.570 -0.089 -1.138 N1 WFU 2 WFU C2 C1 C 0 1 Y N N N N N 11.011 -5.658 -40.347 6.701 -0.914 -1.695 C2 WFU 3 WFU N3 N2 N 0 1 Y N N N N N 9.956 -5.306 -39.386 5.422 -0.907 -1.384 N3 WFU 4 WFU C4 C2 C 0 1 Y N N N N N 8.668 -5.595 -39.523 4.948 -0.055 -0.481 C4 WFU 5 WFU C5 C3 C 0 1 Y N N N N N 8.252 -6.313 -40.576 5.832 0.843 0.140 C5 WFU 6 WFU C6 C4 C 0 1 Y N N N N N 9.096 -6.691 -41.513 7.189 0.798 -0.225 C6 WFU 7 WFU CA C5 C 0 1 N N S N N N 7.507 -9.520 -33.190 -4.467 0.641 -0.593 CA WFU 8 WFU CB C6 C 0 1 N N N N N N 7.787 -8.559 -31.990 -5.087 -0.751 -0.459 CB WFU 9 WFU CD C7 C 0 1 N N N N N N 8.369 -6.178 -31.646 -4.652 -3.094 0.227 CD WFU 10 WFU CG C8 C 0 1 N N N N N N 7.302 -7.126 -32.217 -4.042 -1.723 0.095 CG WFU 11 WFU "C1'" C9 C 0 1 N N R N N N 7.490 -4.486 -37.506 2.461 -0.483 -0.285 "C1'" WFU 12 WFU OP1 O1 O 0 1 N N N N N N 10.080 -10.130 -34.634 -2.408 2.580 2.045 OP1 WFU 13 WFU "C2'" C10 C 0 1 N N R N N N 6.444 -5.105 -36.588 2.275 -1.730 0.607 "C2'" WFU 14 WFU "O2'" O2 O 0 1 N N N N N N 5.924 -4.172 -35.648 2.687 -2.909 -0.087 "O2'" WFU 15 WFU OP2 O3 O 0 1 N N N N N N 9.923 -7.775 -33.578 -2.934 3.327 -0.308 OP2 WFU 16 WFU "C3'" C11 C 0 1 N N S N N N 7.242 -6.154 -35.895 0.755 -1.769 0.885 "C3'" WFU 17 WFU "O3'" O4 O 0 1 N N N N N N 6.573 -6.354 -34.661 0.183 -2.973 0.371 "O3'" WFU 18 WFU "C4'" C12 C 0 1 N N R N N N 8.680 -5.534 -35.754 0.204 -0.541 0.128 "C4'" WFU 19 WFU "O4'" O5 O 0 1 N N N N N N 8.724 -4.453 -36.729 1.327 0.359 0.016 "O4'" WFU 20 WFU "C5'" C13 C 0 1 N N N N N N 9.919 -6.470 -36.039 -0.928 0.112 0.925 "C5'" WFU 21 WFU "O5'" O6 O 0 1 N N N N N N 9.546 -7.852 -35.995 -1.501 1.172 0.157 "O5'" WFU 22 WFU OE1 O7 O 0 1 N N N N N N 8.934 -5.379 -32.438 -5.804 -3.276 -0.089 OE1 WFU 23 WFU OE2 O8 O 0 1 N N N N N N 8.589 -6.231 -30.414 -3.916 -4.114 0.696 OE2 WFU 24 WFU C C14 C 0 1 N N N N N N 6.051 -9.924 -33.164 -5.455 1.569 -1.252 C WFU 25 WFU OXT O9 O 0 1 N N N N N N 5.735 -10.718 -32.247 -5.913 1.297 -2.484 OXT WFU 26 WFU O O10 O 0 1 N N N N N N 5.316 -9.434 -34.056 -5.836 2.558 -0.670 O WFU 27 WFU N N3 N 0 1 N N N N N N 7.836 -8.959 -34.513 -4.126 1.156 0.740 N WFU 28 WFU N9 N4 N 0 1 Y N N N N N 7.595 -5.288 -38.780 3.711 0.203 0.052 N9 WFU 29 WFU C8 C15 C 0 1 Y N N N N N 6.515 -5.845 -39.374 3.857 1.214 0.954 C8 WFU 30 WFU N7 N5 N 0 1 Y N N N N N 6.933 -6.485 -40.464 5.103 1.589 1.005 N7 WFU 31 WFU N6 N6 N 0 1 N N N N N N 8.583 -7.427 -42.498 8.106 1.658 0.353 N6 WFU 32 WFU H1 H1 H 0 1 N N N N N N 12.047 -5.360 -40.280 7.053 -1.619 -2.432 H1 WFU 33 WFU H2 H2 H 0 1 N N N N N N 8.113 -10.425 -33.035 -3.565 0.580 -1.201 H2 WFU 34 WFU H3 H3 H 0 1 N N N N N N 7.280 -8.959 -31.100 -5.938 -0.707 0.221 H3 WFU 35 WFU H4 H4 H 0 1 N N N N N N 8.872 -8.533 -31.813 -5.421 -1.096 -1.437 H4 WFU 36 WFU H5 H5 H 0 1 N N N N N N 7.172 -6.940 -33.293 -3.191 -1.768 -0.585 H5 WFU 37 WFU H6 H6 H 0 1 N N N N N N 6.344 -6.968 -31.700 -3.708 -1.378 1.073 H6 WFU 38 WFU H7 H7 H 0 1 N N N N N N 7.181 -3.460 -37.754 2.455 -0.766 -1.338 H7 WFU 39 WFU H8 H8 H 0 1 N N N N N N 5.643 -5.563 -37.186 2.831 -1.620 1.538 H8 WFU 40 WFU H9 H9 H 0 1 N N N N N N 5.278 -4.601 -35.099 2.591 -3.723 0.427 H9 WFU 41 WFU H10 H10 H 0 1 N N N N N N 10.609 -8.172 -33.054 -3.142 3.073 -1.217 H10 WFU 42 WFU H11 H11 H 0 1 N N N N N N 7.289 -7.075 -36.495 0.560 -1.678 1.954 H11 WFU 43 WFU H12 H12 H 0 1 N N N N N N 7.029 -7.018 -34.157 0.538 -3.779 0.770 H12 WFU 44 WFU H13 H13 H 0 1 N N N N N N 8.783 -5.125 -34.738 -0.149 -0.832 -0.861 H13 WFU 45 WFU H14 H14 H 0 1 N N N N N N 10.692 -6.283 -35.279 -1.693 -0.632 1.145 H14 WFU 46 WFU H15 H15 H 0 1 N N N N N N 10.321 -6.239 -37.036 -0.531 0.512 1.858 H15 WFU 47 WFU H16 H16 H 0 1 N N N N N N 9.241 -5.581 -30.180 -4.351 -4.975 0.763 H16 WFU 48 WFU H17 H17 H 0 1 N N N N N N 4.809 -10.921 -32.309 -6.545 1.922 -2.865 H17 WFU 49 WFU H18 H18 H 0 1 N N N N N N 7.377 -8.078 -34.630 -4.040 0.403 1.407 H18 WFU 50 WFU H19 H19 H 0 1 N N N N N N 5.495 -5.782 -39.026 3.057 1.642 1.541 H19 WFU 51 WFU H20 H20 H 0 1 N N N N N N 9.321 -7.757 -43.087 9.040 1.617 0.093 H20 WFU 52 WFU H21 H21 H 0 1 N N N N N N 8.092 -8.207 -42.110 7.816 2.301 1.018 H21 WFU 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WFU N6 C6 SING N N 1 WFU C6 N1 DOUB Y N 2 WFU C6 C5 SING Y N 3 WFU N1 C2 SING Y N 4 WFU C5 N7 SING Y N 5 WFU C5 C4 DOUB Y N 6 WFU N7 C8 DOUB Y N 7 WFU C2 N3 DOUB Y N 8 WFU C4 N3 SING Y N 9 WFU C4 N9 SING Y N 10 WFU C8 N9 SING Y N 11 WFU N9 "C1'" SING N N 12 WFU "C1'" "O4'" SING N N 13 WFU "C1'" "C2'" SING N N 14 WFU "O4'" "C4'" SING N N 15 WFU "C2'" "C3'" SING N N 16 WFU "C2'" "O2'" SING N N 17 WFU "C5'" "O5'" SING N N 18 WFU "C5'" "C4'" SING N N 19 WFU "O5'" P SING N N 20 WFU "C3'" "C4'" SING N N 21 WFU "C3'" "O3'" SING N N 22 WFU OP1 P DOUB N N 23 WFU P N SING N N 24 WFU P OP2 SING N N 25 WFU N CA SING N N 26 WFU O C DOUB N N 27 WFU CA C SING N N 28 WFU CA CB SING N N 29 WFU C OXT SING N N 30 WFU OE1 CD DOUB N N 31 WFU CG CB SING N N 32 WFU CG CD SING N N 33 WFU CD OE2 SING N N 34 WFU C2 H1 SING N N 35 WFU CA H2 SING N N 36 WFU CB H3 SING N N 37 WFU CB H4 SING N N 38 WFU CG H5 SING N N 39 WFU CG H6 SING N N 40 WFU "C1'" H7 SING N N 41 WFU "C2'" H8 SING N N 42 WFU "O2'" H9 SING N N 43 WFU OP2 H10 SING N N 44 WFU "C3'" H11 SING N N 45 WFU "O3'" H12 SING N N 46 WFU "C4'" H13 SING N N 47 WFU "C5'" H14 SING N N 48 WFU "C5'" H15 SING N N 49 WFU OE2 H16 SING N N 50 WFU OXT H17 SING N N 51 WFU N H18 SING N N 52 WFU C8 H19 SING N N 53 WFU N6 H20 SING N N 54 WFU N6 H21 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WFU SMILES ACDLabs 12.01 "O=C(O)C(CCC(=O)O)NP(=O)(O)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1O" WFU InChI InChI 1.06 "InChI=1S/C15H21N6O10P/c16-12-9-13(18-4-17-12)21(5-19-9)14-11(25)10(24)7(31-14)3-30-32(28,29)20-6(15(26)27)1-2-8(22)23/h4-7,10-11,14,24-25H,1-3H2,(H,22,23)(H,26,27)(H2,16,17,18)(H2,20,28,29)/t6-,7+,10+,11+,14+/m0/s1" WFU InChIKey InChI 1.06 CKTPKDBUYLAONN-LTOLZBHSSA-N WFU SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)N[C@@H](CCC(O)=O)C(O)=O)[C@@H](O)[C@H]3O" WFU SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)N[CH](CCC(O)=O)C(O)=O)[CH](O)[CH]3O" WFU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(N[C@@H](CCC(=O)O)C(=O)O)O)O)O)N" WFU SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(NC(CCC(=O)O)C(=O)O)O)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WFU "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-{[(S)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]amino}pentanedioic acid (non-preferred name)" WFU "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]amino]pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WFU "Create component" 2023-10-03 RCSB WFU "Initial release" 2024-10-16 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id WFU _pdbx_chem_comp_synonyms.name ;Glutamyl-5'-O-adenosine phosphoramidate ; _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #