data_WG4
#
_chem_comp.id WG4
_chem_comp.name "N-(5-{[(5S)-7-(5-methylimidazo[1,2-a]pyrimidin-7-yl)-2,7-diazaspiro[4.4]nonan-2-yl]methyl}-1,3-thiazol-2-yl)acetamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H25 N7 O S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-10-28
_chem_comp.pdbx_modified_date 2020-11-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 411.524
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code WG4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7KHS
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WG4 C1 C1 C 0 1 N N N 55.744 -1.940 273.241 9.448 1.849 0.448 C1 WG4 1
WG4 C2 C2 C 0 1 N N N 54.545 -2.821 273.086 8.213 0.986 0.421 C2 WG4 2
WG4 C5 C3 C 0 1 Y N N 53.726 -4.884 272.106 6.049 0.506 -0.422 C5 WG4 3
WG4 C7 C4 C 0 1 Y N N 52.769 -6.758 271.354 4.720 -1.189 0.154 C7 WG4 4
WG4 C8 C5 C 0 1 Y N N 51.672 -6.081 271.701 3.896 -0.644 -0.743 C8 WG4 5
WG4 N10 N1 N 0 1 N N N 49.953 -7.186 272.992 1.521 -0.536 -0.239 N10 WG4 6
WG4 C11 C6 C 0 1 N N N 49.073 -6.410 273.893 1.636 -1.048 1.152 C11 WG4 7
WG4 C12 C7 C 0 1 N N N 49.086 -7.061 275.297 0.241 -0.747 1.763 C12 WG4 8
WG4 C15 C8 C 0 1 N N N 51.680 -9.476 276.515 -2.670 -2.157 -0.132 C15 WG4 9
WG4 C17 C9 C 0 1 N N N 49.793 -9.450 275.112 -1.873 -0.010 0.575 C17 WG4 10
WG4 C18 C10 C 0 1 Y N N 51.328 -11.432 274.866 -4.350 -0.258 0.063 C18 WG4 11
WG4 C19 C11 C 0 1 Y N N 52.619 -12.014 275.017 -5.410 -1.095 -0.348 C19 WG4 12
WG4 C21 C12 C 0 1 N N N 54.205 -13.849 274.602 -7.808 -1.454 -0.875 C21 WG4 13
WG4 N22 N2 N 0 1 Y N N 51.792 -13.801 273.732 -6.864 0.733 -0.133 N22 WG4 14
WG4 C23 C13 C 0 1 Y N N 51.654 -14.969 273.061 -7.987 1.521 -0.130 C23 WG4 15
WG4 C24 C14 C 0 1 Y N N 50.401 -15.074 272.562 -7.604 2.753 0.261 C24 WG4 16
WG4 O3 O1 O 0 1 N N N 53.478 -2.425 273.558 8.140 0.008 1.134 O3 WG4 17
WG4 N4 N3 N 0 1 N N N 54.728 -3.978 272.395 7.189 1.301 -0.396 N4 WG4 18
WG4 N6 N4 N 0 1 Y N N 53.870 -6.064 271.578 5.868 -0.555 0.302 N6 WG4 19
WG4 C9 C15 C 0 1 N N N 50.251 -6.474 271.707 2.527 -1.155 -1.112 C9 WG4 20
WG4 C13 C16 C 0 1 N N S 50.273 -8.019 275.212 -0.702 -0.996 0.579 C13 WG4 21
WG4 C14 C17 C 0 1 N N N 51.140 -8.020 276.484 -1.368 -2.380 0.682 C14 WG4 22
WG4 N16 N5 N 0 1 N N N 50.995 -10.224 275.438 -3.069 -0.766 0.161 N16 WG4 23
WG4 C20 C18 C 0 1 Y N N 52.846 -13.210 274.433 -6.658 -0.584 -0.440 C20 WG4 24
WG4 N25 N6 N 0 1 Y N N 49.727 -13.985 272.906 -6.287 2.738 0.495 N25 WG4 25
WG4 C26 C19 C 0 1 Y N N 50.548 -13.216 273.614 -5.813 1.524 0.253 C26 WG4 26
WG4 N27 N7 N 0 1 Y N N 50.353 -12.043 274.187 -4.578 1.010 0.347 N27 WG4 27
WG4 C28 C20 C 0 1 N N N 51.035 -7.594 273.961 0.149 -0.878 -0.684 C28 WG4 28
WG4 S29 S1 S 0 1 Y N N 52.092 -4.555 272.377 4.680 0.787 -1.406 S29 WG4 29
WG4 H1 H1 H 0 1 N N N 55.461 -1.026 273.784 10.161 1.439 1.164 H1 WG4 30
WG4 H3 H2 H 0 1 N N N 56.522 -2.475 273.805 9.900 1.868 -0.544 H3 WG4 31
WG4 H2 H3 H 0 1 N N N 56.132 -1.670 272.247 9.177 2.862 0.745 H2 WG4 32
WG4 H5 H4 H 0 1 N N N 52.757 -7.755 270.939 4.471 -2.082 0.709 H5 WG4 33
WG4 H8 H6 H 0 1 N N N 49.439 -5.375 273.963 1.833 -2.120 1.152 H8 WG4 34
WG4 H9 H7 H 0 1 N N N 48.047 -6.410 273.496 2.416 -0.513 1.694 H9 WG4 35
WG4 H11 H8 H 0 1 N N N 49.241 -6.307 276.083 0.022 -1.431 2.582 H11 WG4 36
WG4 H10 H9 H 0 1 N N N 48.150 -7.605 275.490 0.181 0.288 2.098 H10 WG4 37
WG4 H14 H10 H 0 1 N N N 51.463 -9.937 277.490 -2.476 -2.279 -1.197 H14 WG4 38
WG4 H15 H11 H 0 1 N N N 52.766 -9.478 276.342 -3.444 -2.851 0.194 H15 WG4 39
WG4 H16 H12 H 0 1 N N N 48.987 -9.648 275.834 -2.020 0.399 1.574 H16 WG4 40
WG4 H17 H13 H 0 1 N N N 49.439 -9.678 274.096 -1.679 0.795 -0.133 H17 WG4 41
WG4 H18 H14 H 0 1 N N N 53.392 -11.514 275.581 -5.226 -2.132 -0.586 H18 WG4 42
WG4 H19 H15 H 0 1 N N N 54.864 -13.534 273.780 -7.909 -1.408 -1.959 H19 WG4 43
WG4 H21 H16 H 0 1 N N N 54.641 -13.535 275.562 -7.620 -2.484 -0.571 H21 WG4 44
WG4 H20 H17 H 0 1 N N N 54.100 -14.944 274.588 -8.728 -1.100 -0.409 H20 WG4 45
WG4 H22 H18 H 0 1 N N N 52.431 -15.709 272.942 -8.988 1.212 -0.392 H22 WG4 46
WG4 H23 H19 H 0 1 N N N 50.016 -15.901 271.984 -8.255 3.608 0.375 H23 WG4 47
WG4 H4 H20 H 0 1 N N N 55.652 -4.187 272.074 7.247 2.084 -0.967 H4 WG4 48
WG4 H6 H21 H 0 1 N N N 49.619 -5.577 271.626 2.313 -0.901 -2.150 H6 WG4 49
WG4 H7 H22 H 0 1 N N N 50.049 -7.143 270.858 2.498 -2.238 -0.990 H7 WG4 50
WG4 H12 H23 H 0 1 N N N 51.961 -7.292 276.407 -1.593 -2.629 1.719 H12 WG4 51
WG4 H13 H24 H 0 1 N N N 50.537 -7.800 277.377 -0.747 -3.148 0.223 H13 WG4 52
WG4 H24 H25 H 0 1 N N N 51.624 -8.432 273.559 -0.243 -0.089 -1.326 H24 WG4 53
WG4 H25 H26 H 0 1 N N N 51.703 -6.748 274.179 0.155 -1.827 -1.220 H25 WG4 54
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WG4 C7 N6 SING Y N 1
WG4 C7 C8 DOUB Y N 2
WG4 N6 C5 DOUB Y N 3
WG4 C8 C9 SING N N 4
WG4 C8 S29 SING Y N 5
WG4 C9 N10 SING N N 6
WG4 C5 S29 SING Y N 7
WG4 C5 N4 SING N N 8
WG4 N4 C2 SING N N 9
WG4 C24 N25 SING Y N 10
WG4 C24 C23 DOUB Y N 11
WG4 N25 C26 DOUB Y N 12
WG4 N10 C11 SING N N 13
WG4 N10 C28 SING N N 14
WG4 C23 N22 SING Y N 15
WG4 C2 C1 SING N N 16
WG4 C2 O3 DOUB N N 17
WG4 C26 N22 SING Y N 18
WG4 C26 N27 SING Y N 19
WG4 N22 C20 SING Y N 20
WG4 C11 C12 SING N N 21
WG4 C28 C13 SING N N 22
WG4 N27 C18 DOUB Y N 23
WG4 C20 C21 SING N N 24
WG4 C20 C19 DOUB Y N 25
WG4 C18 C19 SING Y N 26
WG4 C18 N16 SING N N 27
WG4 C17 C13 SING N N 28
WG4 C17 N16 SING N N 29
WG4 C13 C12 SING N N 30
WG4 C13 C14 SING N N 31
WG4 N16 C15 SING N N 32
WG4 C14 C15 SING N N 33
WG4 C1 H1 SING N N 34
WG4 C1 H3 SING N N 35
WG4 C1 H2 SING N N 36
WG4 C7 H5 SING N N 37
WG4 C11 H8 SING N N 38
WG4 C11 H9 SING N N 39
WG4 C12 H11 SING N N 40
WG4 C12 H10 SING N N 41
WG4 C15 H14 SING N N 42
WG4 C15 H15 SING N N 43
WG4 C17 H16 SING N N 44
WG4 C17 H17 SING N N 45
WG4 C19 H18 SING N N 46
WG4 C21 H19 SING N N 47
WG4 C21 H21 SING N N 48
WG4 C21 H20 SING N N 49
WG4 C23 H22 SING N N 50
WG4 C24 H23 SING N N 51
WG4 N4 H4 SING N N 52
WG4 C9 H6 SING N N 53
WG4 C9 H7 SING N N 54
WG4 C14 H12 SING N N 55
WG4 C14 H13 SING N N 56
WG4 C28 H24 SING N N 57
WG4 C28 H25 SING N N 58
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WG4 SMILES ACDLabs 12.01 "CC(=O)Nc1sc(cn1)CN5CCC2(CN(CC2)c4cc(C)n3ccnc3n4)C5"
WG4 InChI InChI 1.03 "InChI=1S/C20H25N7OS/c1-14-9-17(24-18-21-5-8-27(14)18)26-7-4-20(13-26)3-6-25(12-20)11-16-10-22-19(29-16)23-15(2)28/h5,8-10H,3-4,6-7,11-13H2,1-2H3,(H,22,23,28)/t20-/m0/s1"
WG4 InChIKey InChI 1.03 RJDUUKXZMXIWIE-FQEVSTJZSA-N
WG4 SMILES_CANONICAL CACTVS 3.385 "CC(=O)Nc1sc(CN2CC[C@]3(CCN(C3)c4cc(C)n5ccnc5n4)C2)cn1"
WG4 SMILES CACTVS 3.385 "CC(=O)Nc1sc(CN2CC[C]3(CCN(C3)c4cc(C)n5ccnc5n4)C2)cn1"
WG4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc2n1ccn2)N3CC[C@@]4(C3)CCN(C4)Cc5cnc(s5)NC(=O)C"
WG4 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc2n1ccn2)N3CCC4(C3)CCN(C4)Cc5cnc(s5)NC(=O)C"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WG4 "SYSTEMATIC NAME" ACDLabs 12.01 "N-(5-{[(5S)-7-(5-methylimidazo[1,2-a]pyrimidin-7-yl)-2,7-diazaspiro[4.4]nonan-2-yl]methyl}-1,3-thiazol-2-yl)acetamide"
WG4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[5-[[(5~{S})-2-(5-methylimidazo[1,2-a]pyrimidin-7-yl)-2,7-diazaspiro[4.4]nonan-7-yl]methyl]-1,3-thiazol-2-yl]ethanamide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WG4 "Create component" 2020-10-28 RCSB
WG4 "Initial release" 2020-12-02 RCSB
##