data_WGB # _chem_comp.id WGB _chem_comp.name "(2~{S})-2-(methylamino)-3-[4-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]phenyl]propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type ATOMP _chem_comp.formula "C10 H13 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2023-10-03 _chem_comp.pdbx_modified_date 2024-03-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 225.221 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WGB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8WM0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WGB OXT OXT O 0 1 N Y N Y N Y -1.188 2.066 -2.763 4.295 1.487 -0.468 OXT WGB 1 WGB O O O 0 1 N N N Y N Y -3.067 2.294 -1.592 4.458 -0.426 0.625 O WGB 2 WGB O03 O03 O 0 1 N N N N N N 0.743 6.449 3.666 -4.568 -1.038 0.233 O03 WGB 3 WGB O04 O04 O 0 1 N N N N N N -1.083 7.325 2.817 -4.602 0.775 -0.846 O04 WGB 4 WGB N N N 0 1 N N N Y Y N 0.229 0.987 -0.772 2.101 -1.407 -0.187 N WGB 5 WGB N02 N02 N -1 1 N N N N N N -0.312 6.375 3.018 -3.993 -0.051 -0.189 N02 WGB 6 WGB C01 C01 C 0 1 N N N N N N -1.761 1.227 0.804 1.474 0.698 0.897 C01 WGB 7 WGB CA CA C 0 1 N N S Y N N -1.249 0.926 -0.622 2.306 0.047 -0.210 CA WGB 8 WGB C04 C04 C 0 1 Y N N N N N -0.186 2.731 2.108 -0.678 1.438 -0.145 C04 WGB 9 WGB C05 C05 C 0 1 Y N N N N N -2.217 3.685 1.209 -0.641 -0.624 1.094 C05 WGB 10 WGB C C C 0 1 N N N Y N Y -1.931 1.847 -1.651 3.765 0.352 0.013 C WGB 11 WGB C07 C07 C 0 1 Y N N N N N 0.169 3.971 2.642 -2.016 1.265 -0.415 C07 WGB 12 WGB C08 C08 C 0 1 Y N N N N N -1.871 4.931 1.737 -1.977 -0.822 0.826 C08 WGB 13 WGB C09 C09 C 0 1 Y N N N N N -0.676 5.068 2.454 -2.685 0.127 0.069 C09 WGB 14 WGB H01 H01 H 0 1 N N N N N N -1.365 0.449 1.473 1.721 0.239 1.854 H01 WGB 15 WGB H02 H02 H 0 1 N N N N N N -2.859 1.170 0.785 1.694 1.765 0.938 H02 WGB 16 WGB HA H03 H 0 1 N N N Y N N -1.561 -0.102 -0.860 1.997 0.443 -1.177 H03 WGB 17 WGB H H04 H 0 1 N Y N Y Y N 0.453 0.923 -1.744 2.663 -1.840 0.530 H04 WGB 18 WGB H05 H05 H 0 1 N N N N N N 0.465 1.882 2.254 -0.162 2.311 -0.516 H05 WGB 19 WGB H06 H06 H 0 1 N N N N N N -3.141 3.575 0.660 -0.096 -1.352 1.676 H06 WGB 20 WGB H07 H07 H 0 1 N N N N N N 1.089 4.082 3.196 -2.551 2.000 -0.998 H07 WGB 21 WGB H08 H08 H 0 1 N N N N N N -2.520 5.782 1.593 -2.480 -1.704 1.196 H08 WGB 22 WGB H09 H09 H 0 1 N N N N N N 2.002 0.017 -0.215 2.204 -3.074 -1.462 H09 WGB 23 WGB H10 H10 H 0 1 N N N N N N 0.687 -0.020 1.008 1.718 -1.553 -2.248 H10 WGB 24 WGB H11 H11 H 0 1 N N N N N N 0.581 -1.055 -0.457 3.415 -1.808 -1.776 H11 WGB 25 WGB C03 C03 C 0 1 Y N N N N N -1.378 2.574 1.384 0.009 0.498 0.607 C03 WGB 26 WGB C10 C10 C 0 1 N N N N N N 0.917 -0.083 -0.066 2.377 -1.998 -1.503 C10 WGB 27 WGB HXT H1 H 0 1 N Y N Y N Y -1.693 2.574 -3.387 5.235 1.639 -0.299 H1 WGB 28 WGB H03 H2 H 0 1 N N N N N N 0.862 7.338 3.978 -5.508 -1.123 0.021 H2 WGB 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WGB OXT C SING N N 1 WGB O C DOUB N N 2 WGB O03 N02 SING N N 3 WGB O04 N02 DOUB N N 4 WGB N CA SING N N 5 WGB N C10 SING N N 6 WGB N H SING N N 7 WGB N02 C09 SING N N 8 WGB C01 CA SING N N 9 WGB C01 C03 SING N N 10 WGB C01 H02 SING N N 11 WGB C01 H01 SING N N 12 WGB CA C SING N N 13 WGB CA HA SING N N 14 WGB C03 C05 DOUB Y N 15 WGB C03 C04 SING Y N 16 WGB C04 C07 DOUB Y N 17 WGB C04 H05 SING N N 18 WGB C05 C08 SING Y N 19 WGB C05 H06 SING N N 20 WGB C07 C09 SING Y N 21 WGB C07 H07 SING N N 22 WGB C08 C09 DOUB Y N 23 WGB C08 H08 SING N N 24 WGB C10 H09 SING N N 25 WGB C10 H10 SING N N 26 WGB C10 H11 SING N N 27 WGB OXT HXT SING N N 28 WGB O03 H03 SING N N 29 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WGB InChI InChI 1.06 "InChI=1S/C10H13N2O4/c1-11-9(10(13)14)6-7-2-4-8(5-3-7)12(15)16/h2-5,9,11H,6H2,1H3,(H,13,14)(H,15,16)/q-1/t9-/m0/s1" WGB InChIKey InChI 1.06 WJFGDHYNMQDFBH-VIFPVBQESA-N WGB SMILES_CANONICAL CACTVS 3.385 "CN[C@@H](Cc1ccc(cc1)[N-](O)=O)C(O)=O" WGB SMILES CACTVS 3.385 "CN[CH](Cc1ccc(cc1)[N-](O)=O)C(O)=O" WGB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN[C@@H](Cc1ccc(cc1)[N-](=O)O)C(=O)O" WGB SMILES "OpenEye OEToolkits" 2.0.7 "CNC(Cc1ccc(cc1)[N-](=O)O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id WGB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-(methylamino)-3-[4-[oxidanyl(oxidanylidene)azanuidyl]phenyl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WGB "Create component" 2023-10-03 PDBJ WGB "Modify backbone" 2023-11-03 PDBE WGB "Initial release" 2024-03-27 RCSB #