data_WGI # _chem_comp.id WGI _chem_comp.name "benzyl (3S)-3-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}carbamoyl)-2-azaspiro[4.5]decane-2-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H35 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-12 _chem_comp.pdbx_modified_date 2023-08-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 457.563 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WGI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8STZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WGI N1 N1 N 0 1 N N N -9.147 -15.030 -18.557 -1.136 0.706 -0.089 N1 WGI 1 WGI N3 N2 N 0 1 N N N -15.168 -16.436 -15.942 5.540 -3.442 -1.392 N3 WGI 2 WGI C4 C1 C 0 1 N N S -9.327 -13.764 -17.848 0.240 1.195 -0.267 C4 WGI 3 WGI C5 C2 C 0 1 N N N -8.458 -12.786 -18.659 0.237 2.705 0.056 C5 WGI 4 WGI C6 C3 C 0 1 N N N -10.797 -13.361 -17.957 1.167 0.468 0.672 C6 WGI 5 WGI C7 C4 C 0 1 N N N -15.207 -16.290 -17.393 4.348 -4.052 -0.791 C7 WGI 6 WGI C8 C5 C 0 1 N N N -14.623 -14.902 -17.596 3.770 -2.979 0.158 C8 WGI 7 WGI C10 C6 C 0 1 N N S -13.744 -14.661 -16.378 4.299 -1.674 -0.482 C10 WGI 8 WGI C13 C7 C 0 1 N N N -12.794 -10.868 -16.475 3.774 0.684 2.514 C13 WGI 9 WGI C15 C8 C 0 1 Y N N -11.790 -18.347 -19.285 -4.694 -2.437 -0.061 C15 WGI 10 WGI C17 C9 C 0 1 Y N N -14.021 -19.285 -19.318 -6.962 -2.411 -0.829 C17 WGI 11 WGI C20 C10 C 0 1 Y N N -12.227 -17.356 -20.164 -5.127 -2.785 1.205 C20 WGI 12 WGI C21 C11 C 0 1 N N N -6.336 -14.120 -18.256 -1.545 3.365 -1.597 C21 WGI 13 WGI C22 C12 C 0 1 N N N -5.348 -13.025 -17.857 -0.765 4.600 -2.060 C22 WGI 14 WGI C24 C13 C 0 1 N N N -5.880 -11.823 -20.057 -0.818 5.518 0.265 C24 WGI 15 WGI C1 C14 C 0 1 N N N -9.813 -16.169 -18.228 -1.553 -0.559 -0.293 C1 WGI 16 WGI C11 C15 C 0 1 N N N -13.609 -13.211 -15.907 4.662 -0.656 0.601 C11 WGI 17 WGI C12 C16 C 0 1 N N S -12.762 -12.345 -16.866 3.397 -0.240 1.354 C12 WGI 18 WGI C14 C17 C 0 1 N N N -10.363 -18.402 -18.790 -3.222 -2.264 -0.333 C14 WGI 19 WGI C16 C18 C 0 1 Y N N -12.702 -19.309 -18.860 -5.612 -2.252 -1.079 C16 WGI 20 WGI C18 C19 C 0 1 Y N N -14.434 -18.295 -20.194 -7.394 -2.765 0.435 C18 WGI 21 WGI C19 C20 C 0 1 Y N N -13.542 -17.331 -20.626 -6.477 -2.950 1.452 C19 WGI 22 WGI C2 C21 C 0 1 N N N -7.386 -13.708 -19.297 -1.246 3.094 -0.131 C2 WGI 23 WGI C23 C22 C 0 1 N N N -4.813 -12.231 -19.040 -1.160 5.801 -1.199 C23 WGI 24 WGI C25 C23 C 0 1 N N N -6.760 -12.992 -20.491 -1.598 4.289 0.740 C25 WGI 25 WGI C3 C24 C 0 1 N N N -8.218 -14.930 -19.701 -1.984 1.829 0.357 C3 WGI 26 WGI C9 C25 C 0 1 N N N -14.376 -15.561 -15.337 5.536 -2.107 -1.238 C9 WGI 27 WGI N2 N3 N 0 1 N N N -11.356 -12.795 -16.885 2.495 0.467 0.441 N2 WGI 28 WGI O1 O1 O 0 1 N N N -9.623 -17.178 -19.098 -2.845 -0.883 -0.094 O1 WGI 29 WGI O2 O2 O 0 1 N N N -10.539 -16.234 -17.255 -0.763 -1.408 -0.656 O2 WGI 30 WGI O3 O3 O 0 1 N N N -11.418 -13.563 -19.006 0.719 -0.116 1.636 O3 WGI 31 WGI O5 O4 O 0 1 N N N -14.174 -15.498 -14.119 6.401 -1.359 -1.641 O5 WGI 32 WGI O6 O5 O 0 1 N N N -14.101 -10.317 -16.587 4.531 1.789 2.016 O6 WGI 33 WGI H1 H1 H 0 1 N N N -15.690 -17.132 -15.449 6.243 -3.940 -1.839 H1 WGI 34 WGI H2 H2 H 0 1 N N N -8.999 -13.817 -16.799 0.558 1.037 -1.298 H2 WGI 35 WGI H3 H3 H 0 1 N N N -7.993 -12.035 -18.003 0.554 2.880 1.084 H3 WGI 36 WGI H4 H4 H 0 1 N N N -9.053 -12.279 -19.433 0.873 3.250 -0.641 H4 WGI 37 WGI H5 H5 H 0 1 N N N -16.238 -16.347 -17.771 3.622 -4.302 -1.564 H5 WGI 38 WGI H6 H6 H 0 1 N N N -14.592 -17.057 -17.887 4.623 -4.945 -0.230 H6 WGI 39 WGI H7 H7 H 0 1 N N N -14.024 -14.866 -18.518 2.680 -3.001 0.154 H7 WGI 40 WGI H8 H8 H 0 1 N N N -15.424 -14.150 -17.649 4.158 -3.103 1.169 H8 WGI 41 WGI H9 H9 H 0 1 N N N -12.737 -15.044 -16.600 3.559 -1.257 -1.164 H9 WGI 42 WGI H10 H10 H 0 1 N N N -12.454 -10.769 -15.433 2.868 1.051 2.996 H10 WGI 43 WGI H11 H11 H 0 1 N N N -12.115 -10.310 -17.137 4.373 0.131 3.238 H11 WGI 44 WGI H12 H12 H 0 1 N N N -14.720 -20.040 -18.989 -7.679 -2.266 -1.625 H12 WGI 45 WGI H13 H13 H 0 1 N N N -11.535 -16.595 -20.492 -4.411 -2.930 2.000 H13 WGI 46 WGI H14 H14 H 0 1 N N N -6.866 -14.446 -17.349 -2.613 3.542 -1.723 H14 WGI 47 WGI H15 H15 H 0 1 N N N -5.761 -14.963 -18.668 -1.247 2.503 -2.194 H15 WGI 48 WGI H16 H16 H 0 1 N N N -4.498 -13.494 -17.339 0.304 4.414 -1.957 H16 WGI 49 WGI H17 H17 H 0 1 N N N -5.856 -12.330 -17.172 -0.999 4.807 -3.104 H17 WGI 50 WGI H18 H18 H 0 1 N N N -5.379 -11.411 -20.946 0.251 5.329 0.359 H18 WGI 51 WGI H19 H19 H 0 1 N N N -6.519 -11.050 -19.605 -1.090 6.380 0.875 H19 WGI 52 WGI H20 H20 H 0 1 N N N -13.132 -13.207 -14.916 5.369 -1.104 1.299 H20 WGI 53 WGI H21 H21 H 0 1 N N N -14.614 -12.771 -15.832 5.114 0.221 0.138 H21 WGI 54 WGI H22 H22 H 0 1 N N N -13.183 -12.444 -17.878 2.898 -1.127 1.744 H22 WGI 55 WGI H23 H23 H 0 1 N N N -10.372 -18.546 -17.699 -2.652 -2.917 0.328 H23 WGI 56 WGI H24 H24 H 0 1 N N N -9.855 -19.253 -19.268 -3.011 -2.524 -1.370 H24 WGI 57 WGI H25 H25 H 0 1 N N N -12.387 -20.079 -18.171 -5.273 -1.984 -2.069 H25 WGI 58 WGI H26 H26 H 0 1 N N N -15.457 -18.276 -20.541 -8.450 -2.889 0.630 H26 WGI 59 WGI H27 H27 H 0 1 N N N -13.862 -16.564 -21.316 -6.815 -3.226 2.440 H27 WGI 60 WGI H28 H28 H 0 1 N N N -4.062 -12.846 -19.557 -0.614 6.683 -1.535 H28 WGI 61 WGI H29 H29 H 0 1 N N N -4.337 -11.317 -18.655 -2.231 5.980 -1.294 H29 WGI 62 WGI H30 H30 H 0 1 N N N -7.564 -12.611 -21.138 -1.337 4.072 1.776 H30 WGI 63 WGI H31 H31 H 0 1 N N N -6.145 -13.710 -21.054 -2.667 4.488 0.669 H31 WGI 64 WGI H32 H32 H 0 1 N N N -8.756 -14.758 -20.645 -2.969 1.763 -0.105 H32 WGI 65 WGI H33 H33 H 0 1 N N N -7.594 -15.831 -19.794 -2.073 1.837 1.443 H33 WGI 66 WGI H34 H34 H 0 1 N N N -10.801 -12.671 -16.063 2.854 0.934 -0.330 H34 WGI 67 WGI H35 H35 H 0 1 N N N -14.081 -9.401 -16.337 4.805 2.417 2.698 H35 WGI 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WGI C19 C18 DOUB Y N 1 WGI C19 C20 SING Y N 2 WGI C25 C24 SING N N 3 WGI C25 C2 SING N N 4 WGI C18 C17 SING Y N 5 WGI C20 C15 DOUB Y N 6 WGI C24 C23 SING N N 7 WGI C3 C2 SING N N 8 WGI C3 N1 SING N N 9 WGI C17 C16 DOUB Y N 10 WGI C2 C5 SING N N 11 WGI C2 C21 SING N N 12 WGI C15 C16 SING Y N 13 WGI C15 C14 SING N N 14 WGI O1 C14 SING N N 15 WGI O1 C1 SING N N 16 WGI C23 C22 SING N N 17 WGI O3 C6 DOUB N N 18 WGI C5 C4 SING N N 19 WGI N1 C1 SING N N 20 WGI N1 C4 SING N N 21 WGI C21 C22 SING N N 22 WGI C1 O2 DOUB N N 23 WGI C6 C4 SING N N 24 WGI C6 N2 SING N N 25 WGI C8 C7 SING N N 26 WGI C8 C10 SING N N 27 WGI C7 N3 SING N N 28 WGI N2 C12 SING N N 29 WGI C12 C13 SING N N 30 WGI C12 C11 SING N N 31 WGI O6 C13 SING N N 32 WGI C10 C11 SING N N 33 WGI C10 C9 SING N N 34 WGI N3 C9 SING N N 35 WGI C9 O5 DOUB N N 36 WGI N3 H1 SING N N 37 WGI C4 H2 SING N N 38 WGI C5 H3 SING N N 39 WGI C5 H4 SING N N 40 WGI C7 H5 SING N N 41 WGI C7 H6 SING N N 42 WGI C8 H7 SING N N 43 WGI C8 H8 SING N N 44 WGI C10 H9 SING N N 45 WGI C13 H10 SING N N 46 WGI C13 H11 SING N N 47 WGI C17 H12 SING N N 48 WGI C20 H13 SING N N 49 WGI C21 H14 SING N N 50 WGI C21 H15 SING N N 51 WGI C22 H16 SING N N 52 WGI C22 H17 SING N N 53 WGI C24 H18 SING N N 54 WGI C24 H19 SING N N 55 WGI C11 H20 SING N N 56 WGI C11 H21 SING N N 57 WGI C12 H22 SING N N 58 WGI C14 H23 SING N N 59 WGI C14 H24 SING N N 60 WGI C16 H25 SING N N 61 WGI C18 H26 SING N N 62 WGI C19 H27 SING N N 63 WGI C23 H28 SING N N 64 WGI C23 H29 SING N N 65 WGI C25 H30 SING N N 66 WGI C25 H31 SING N N 67 WGI C3 H32 SING N N 68 WGI C3 H33 SING N N 69 WGI N2 H34 SING N N 70 WGI O6 H35 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WGI SMILES ACDLabs 12.01 "O=C1NCCC1CC(CO)NC(=O)C1CC2(CCCCC2)CN1C(=O)OCc1ccccc1" WGI InChI InChI 1.06 "InChI=1S/C25H35N3O5/c29-15-20(13-19-9-12-26-22(19)30)27-23(31)21-14-25(10-5-2-6-11-25)17-28(21)24(32)33-16-18-7-3-1-4-8-18/h1,3-4,7-8,19-21,29H,2,5-6,9-17H2,(H,26,30)(H,27,31)/t19-,20-,21-/m0/s1" WGI InChIKey InChI 1.06 FJAFSQQJWASIET-ACRUOGEOSA-N WGI SMILES_CANONICAL CACTVS 3.385 "OC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@@H]2CC3(CCCCC3)CN2C(=O)OCc4ccccc4" WGI SMILES CACTVS 3.385 "OC[CH](C[CH]1CCNC1=O)NC(=O)[CH]2CC3(CCCCC3)CN2C(=O)OCc4ccccc4" WGI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)COC(=O)N2CC3(CCCCC3)C[C@H]2C(=O)N[C@@H](C[C@@H]4CCNC4=O)CO" WGI SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)COC(=O)N2CC3(CCCCC3)CC2C(=O)NC(CC4CCNC4=O)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WGI "SYSTEMATIC NAME" ACDLabs 12.01 "benzyl (3S)-3-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}carbamoyl)-2-azaspiro[4.5]decane-2-carboxylate" WGI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) (3~{S})-3-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]-2-azaspiro[4.5]decane-2-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WGI "Create component" 2023-05-12 RCSB WGI "Initial release" 2023-08-30 RCSB #