data_WGN # _chem_comp.id WGN _chem_comp.name "(2S,3R)-3-dodecylsulfanyl-2-methyl-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H34 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-04 _chem_comp.pdbx_modified_date 2024-10-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 302.516 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WGN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QOO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WGN C11 C1 C 0 1 N N N N N N 3.596 12.812 8.665 7.512 -0.499 -0.340 C11 WGN 1 WGN C12 C2 C 0 1 N N S N N N 3.423 14.289 8.339 6.365 0.476 -0.284 C12 WGN 2 WGN C13 C3 C 0 1 N N N N N N 3.477 15.102 9.626 6.572 1.441 0.885 C13 WGN 3 WGN C21 C4 C 0 1 N N N N N N -0.973 20.431 7.330 -2.778 -0.391 -0.019 C21 WGN 4 WGN C14 C5 C 0 1 N N R N N N 2.100 14.488 7.558 5.054 -0.289 -0.088 C14 WGN 5 WGN C17 C6 C 0 1 N N N N N N -0.483 15.461 8.198 2.216 -0.224 -0.071 C17 WGN 6 WGN C18 C7 C 0 1 N N N N N N 0.126 16.849 8.265 0.937 0.614 -0.127 C18 WGN 7 WGN C19 C8 C 0 1 N N N N N N -0.844 17.971 7.952 -0.281 -0.308 -0.045 C19 WGN 8 WGN C20 C9 C 0 1 N N N N N N -0.177 19.144 7.267 -1.560 0.531 -0.101 C20 WGN 9 WGN C15 C10 C 0 1 N N N N N N 1.929 13.612 6.319 5.066 -0.978 1.278 C15 WGN 10 WGN C22 C11 C 0 1 N N N N N N -0.212 21.548 8.012 -4.057 0.447 -0.076 C22 WGN 11 WGN C23 C12 C 0 1 N N N N N N -0.979 22.847 8.104 -5.275 -0.475 0.006 C23 WGN 12 WGN C24 C13 C 0 1 N N N N N N -0.112 24.015 8.513 -6.554 0.364 -0.050 C24 WGN 13 WGN C25 C14 C 0 1 N N N N N N 0.673 23.756 9.779 -7.772 -0.558 0.032 C25 WGN 14 WGN C26 C15 C 0 1 N N N N N N 1.684 24.838 10.104 -9.051 0.280 -0.024 C26 WGN 15 WGN C27 C16 C 0 1 N N N N N N 2.519 24.494 11.311 -10.269 -0.642 0.058 C27 WGN 16 WGN C28 C17 C 0 1 N N N N N N 1.680 23.907 12.421 -11.548 0.197 0.002 C28 WGN 17 WGN O29 O1 O 0 1 N N N N N N 2.944 12.267 9.550 7.303 -1.684 -0.233 O29 WGN 18 WGN S16 S1 S 0 1 N N N N N N 0.724 14.216 8.721 3.660 0.869 -0.168 S16 WGN 19 WGN H2 H2 H 0 1 N N N N N N 4.255 14.604 7.692 6.320 1.039 -1.217 H2 WGN 20 WGN H3 H3 H 0 1 N N N N N N 4.435 14.921 10.135 7.505 1.986 0.745 H3 WGN 21 WGN H4 H4 H 0 1 N N N N N N 3.385 16.172 9.388 5.742 2.147 0.925 H4 WGN 22 WGN H5 H5 H 0 1 N N N N N N 2.649 14.801 10.285 6.616 0.879 1.817 H5 WGN 23 WGN H6 H6 H 0 1 N N N N N N -1.218 20.745 6.305 -2.763 -1.088 -0.857 H6 WGN 24 WGN H7 H7 H 0 1 N N N N N N -1.902 20.245 7.888 -2.750 -0.948 0.917 H7 WGN 25 WGN H8 H8 H 0 1 N N N N N N 2.029 15.544 7.257 4.950 -1.038 -0.872 H8 WGN 26 WGN H9 H9 H 0 1 N N N N N N -1.359 15.417 8.861 2.244 -0.781 0.865 H9 WGN 27 WGN H10 H10 H 0 1 N N N N N N -0.795 15.252 7.164 2.230 -0.921 -0.909 H10 WGN 28 WGN H11 H11 H 0 1 N N N N N N 0.954 16.897 7.542 0.923 1.311 0.711 H11 WGN 29 WGN H12 H12 H 0 1 N N N N N N 0.517 17.005 9.281 0.909 1.171 -1.064 H12 WGN 30 WGN H13 H13 H 0 1 N N N N N N -1.293 18.321 8.893 -0.266 -1.005 -0.883 H13 WGN 31 WGN H14 H14 H 0 1 N N N N N N -1.633 17.581 7.293 -0.253 -0.864 0.891 H14 WGN 32 WGN H15 H15 H 0 1 N N N N N N -0.023 18.884 6.209 -1.588 1.088 -1.038 H15 WGN 33 WGN H16 H16 H 0 1 N N N N N N 0.797 19.316 7.748 -1.574 1.228 0.736 H16 WGN 34 WGN H17 H17 H 0 1 N N N N N N 0.962 13.833 5.844 4.133 -1.523 1.418 H17 WGN 35 WGN H18 H18 H 0 1 N N N N N N 2.743 13.819 5.608 5.904 -1.674 1.327 H18 WGN 36 WGN H19 H19 H 0 1 N N N N N N 1.959 12.552 6.612 5.171 -0.229 2.063 H19 WGN 37 WGN H20 H20 H 0 1 N N N N N N 0.040 21.222 9.032 -4.071 1.144 0.762 H20 WGN 38 WGN H21 H21 H 0 1 N N N N N N 0.713 21.732 7.446 -4.085 1.004 -1.012 H21 WGN 39 WGN H22 H22 H 0 1 N N N N N N -1.420 23.065 7.120 -5.260 -1.172 -0.831 H22 WGN 40 WGN H23 H23 H 0 1 N N N N N N -1.782 22.729 8.847 -5.247 -1.032 0.943 H23 WGN 41 WGN H24 H24 H 0 1 N N N N N N 0.597 24.227 7.699 -6.568 1.061 0.788 H24 WGN 42 WGN H25 H25 H 0 1 N N N N N N -0.758 24.891 8.674 -6.582 0.921 -0.987 H25 WGN 43 WGN H26 H26 H 0 1 N N N N N N -0.035 23.680 10.617 -7.757 -1.255 -0.806 H26 WGN 44 WGN H27 H27 H 0 1 N N N N N N 1.210 22.803 9.665 -7.744 -1.115 0.969 H27 WGN 45 WGN H28 H28 H 0 1 N N N N N N 2.350 24.972 9.239 -9.065 0.977 0.814 H28 WGN 46 WGN H29 H29 H 0 1 N N N N N N 1.146 25.777 10.301 -9.079 0.837 -0.961 H29 WGN 47 WGN H30 H30 H 0 1 N N N N N N 3.285 23.761 11.017 -10.254 -1.339 -0.780 H30 WGN 48 WGN H31 H31 H 0 1 N N N N N N 3.008 25.408 11.679 -10.241 -1.199 0.994 H31 WGN 49 WGN H32 H32 H 0 1 N N N N N N 2.323 23.670 13.281 -11.562 0.893 0.840 H32 WGN 50 WGN H33 H33 H 0 1 N N N N N N 0.914 24.635 12.726 -11.576 0.753 -0.935 H33 WGN 51 WGN H34 H34 H 0 1 N N N N N N 1.191 22.988 12.064 -12.415 -0.460 0.060 H34 WGN 52 WGN O1 O2 O 0 1 N N N N N N 4.486 12.169 7.921 8.766 -0.051 -0.514 O1 WGN 53 WGN H1 H1 H 0 1 N N N N N N 4.522 11.258 8.187 9.468 -0.715 -0.547 H1 WGN 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WGN C15 C14 SING N N 1 WGN C20 C21 SING N N 2 WGN C20 C19 SING N N 3 WGN C21 C22 SING N N 4 WGN C14 C12 SING N N 5 WGN C14 S16 SING N N 6 WGN C19 C18 SING N N 7 WGN C22 C23 SING N N 8 WGN C23 C24 SING N N 9 WGN C17 C18 SING N N 10 WGN C17 S16 SING N N 11 WGN C12 C11 SING N N 12 WGN C12 C13 SING N N 13 WGN C24 C25 SING N N 14 WGN C11 O29 DOUB N N 15 WGN C25 C26 SING N N 16 WGN C26 C27 SING N N 17 WGN C27 C28 SING N N 18 WGN C12 H2 SING N N 19 WGN C13 H3 SING N N 20 WGN C13 H4 SING N N 21 WGN C13 H5 SING N N 22 WGN C21 H6 SING N N 23 WGN C21 H7 SING N N 24 WGN C14 H8 SING N N 25 WGN C17 H9 SING N N 26 WGN C17 H10 SING N N 27 WGN C18 H11 SING N N 28 WGN C18 H12 SING N N 29 WGN C19 H13 SING N N 30 WGN C19 H14 SING N N 31 WGN C20 H15 SING N N 32 WGN C20 H16 SING N N 33 WGN C15 H17 SING N N 34 WGN C15 H18 SING N N 35 WGN C15 H19 SING N N 36 WGN C22 H20 SING N N 37 WGN C22 H21 SING N N 38 WGN C23 H22 SING N N 39 WGN C23 H23 SING N N 40 WGN C24 H24 SING N N 41 WGN C24 H25 SING N N 42 WGN C25 H26 SING N N 43 WGN C25 H27 SING N N 44 WGN C26 H28 SING N N 45 WGN C26 H29 SING N N 46 WGN C27 H30 SING N N 47 WGN C27 H31 SING N N 48 WGN C28 H32 SING N N 49 WGN C28 H33 SING N N 50 WGN C28 H34 SING N N 51 WGN C11 O1 SING N N 52 WGN O1 H1 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WGN InChI InChI 1.06 "InChI=1S/C17H34O2S/c1-4-5-6-7-8-9-10-11-12-13-14-20-16(3)15(2)17(18)19/h15-16H,4-14H2,1-3H3,(H,18,19)/t15-,16-/m1/s1" WGN InChIKey InChI 1.06 YKCSGXHNGYGGRC-HZPDHXFCSA-N WGN SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCS[C@H](C)[C@@H](C)C(O)=O" WGN SMILES CACTVS 3.385 "CCCCCCCCCCCCS[CH](C)[CH](C)C(O)=O" WGN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCS[C@H](C)[C@@H](C)C(=O)O" WGN SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCSC(C)C(C)C(=O)O" # _pdbx_chem_comp_identifier.comp_id WGN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{R})-3-dodecylsulfanyl-2-methyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WGN "Create component" 2023-10-04 PDBE WGN "Modify coordinates" 2023-10-11 PDBE WGN "Modify PCM" 2024-09-27 PDBE WGN "Initial release" 2024-10-09 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id WGN _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C11 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #