data_WH8 # _chem_comp.id WH8 _chem_comp.name "(2S,3S)-3-dodecylsulfanyl-2-methyl-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H34 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-04 _chem_comp.pdbx_modified_date 2024-10-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 302.516 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WH8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QOO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WH8 C11 C1 C 0 1 N N N N N N 3.527 12.800 8.743 6.724 1.119 0.264 C11 WH8 1 WH8 C12 C2 C 0 1 N N S N N N 3.312 14.280 8.464 6.574 -0.360 0.017 C12 WH8 2 WH8 C13 C3 C 0 1 N N N N N N 3.702 15.081 9.700 6.668 -0.638 -1.485 C13 WH8 3 WH8 C21 C4 C 0 1 N N N N N N -0.816 21.165 6.935 -2.606 -0.387 0.399 C21 WH8 4 WH8 C14 C5 C 0 1 N N S N N N 1.847 14.505 8.012 5.214 -0.829 0.538 C14 WH8 5 WH8 C17 C6 C 0 1 N N N N N N -0.384 16.215 7.868 2.386 -0.609 0.405 C17 WH8 6 WH8 C18 C7 C 0 1 N N N N N N -1.075 17.523 8.209 1.162 -0.040 -0.315 C18 WH8 7 WH8 C19 C8 C 0 1 N N N N N N -0.383 18.747 7.636 -0.110 -0.498 0.402 C19 WH8 8 WH8 C20 C9 C 0 1 N N N N N N -1.340 19.739 6.993 -1.334 0.072 -0.317 C20 WH8 9 WH8 C15 C10 C 0 1 N N N N N N 1.693 14.204 6.524 5.121 -2.352 0.422 C15 WH8 10 WH8 C23 C11 C 0 1 N N N N N N -1.067 23.351 8.211 -5.102 -0.275 0.396 C23 WH8 11 WH8 C24 C12 C 0 1 N N N N N N 0.161 24.214 8.426 -6.326 0.294 -0.323 C24 WH8 12 WH8 C25 C13 C 0 1 N N N N N N 0.859 23.925 9.740 -7.598 -0.164 0.394 C25 WH8 13 WH8 C28 C14 C 0 1 N N N N N N 1.719 23.982 12.426 -11.318 0.517 -0.328 C28 WH8 14 WH8 C22 C15 C 0 1 N N N N N N -0.797 21.858 8.287 -3.830 0.183 -0.320 C22 WH8 15 WH8 C26 C16 C 0 1 N N N N N N 1.933 24.930 10.114 -8.822 0.406 -0.326 C26 WH8 16 WH8 C27 C17 C 0 1 N N N N N N 2.662 24.536 11.380 -10.094 -0.052 0.391 C27 WH8 17 WH8 O29 O1 O 0 1 N N N N N N 2.891 12.212 9.612 5.754 1.839 0.227 O29 WH8 18 WH8 S16 S1 S 0 1 N N N N N N 1.359 16.223 8.359 3.894 -0.066 -0.445 S16 WH8 19 WH8 H2 H2 H 0 1 N N N N N N 3.973 14.577 7.636 7.367 -0.897 0.537 H2 WH8 20 WH8 H3 H3 H 0 1 N N N N N N 4.750 14.870 9.959 7.637 -0.304 -1.856 H3 WH8 21 WH8 H4 H4 H 0 1 N N N N N N 3.585 16.155 9.493 6.560 -1.708 -1.663 H4 WH8 22 WH8 H5 H5 H 0 1 N N N N N N 3.053 14.797 10.541 5.875 -0.101 -2.004 H5 WH8 23 WH8 H6 H6 H 0 1 N N N N N N 0.210 21.143 6.540 -2.655 -1.475 0.392 H6 WH8 24 WH8 H7 H7 H 0 1 N N N N N N -1.458 21.745 6.255 -2.591 -0.030 1.429 H7 WH8 25 WH8 H8 H8 H 0 1 N N N N N N 1.175 13.861 8.598 5.104 -0.537 1.582 H8 WH8 26 WH8 H9 H9 H 0 1 N N N N N N -0.897 15.395 8.392 2.401 -0.253 1.434 H9 WH8 27 WH8 H10 H10 H 0 1 N N N N N N -0.447 16.053 6.782 2.338 -1.698 0.398 H10 WH8 28 WH8 H11 H11 H 0 1 N N N N N N -1.108 17.623 9.304 1.210 1.049 -0.308 H11 WH8 29 WH8 H12 H12 H 0 1 N N N N N N -2.101 17.487 7.813 1.147 -0.396 -1.345 H12 WH8 30 WH8 H13 H13 H 0 1 N N N N N N 0.338 18.415 6.874 -0.159 -1.587 0.395 H13 WH8 31 WH8 H14 H14 H 0 1 N N N N N N 0.153 19.257 8.450 -0.095 -0.141 1.432 H14 WH8 32 WH8 H15 H15 H 0 1 N N N N N N -2.276 19.739 7.571 -1.349 -0.285 -1.347 H15 WH8 33 WH8 H16 H16 H 0 1 N N N N N N -1.544 19.405 5.965 -1.286 1.161 -0.311 H16 WH8 34 WH8 H17 H17 H 0 1 N N N N N N 1.991 13.164 6.327 5.975 -2.807 0.923 H17 WH8 35 WH8 H18 H18 H 0 1 N N N N N N 0.643 14.347 6.228 4.199 -2.696 0.891 H18 WH8 36 WH8 H19 H19 H 0 1 N N N N N N 2.334 14.885 5.944 5.121 -2.637 -0.630 H19 WH8 37 WH8 H20 H20 H 0 1 N N N N N N -1.478 23.577 7.216 -5.087 0.081 1.426 H20 WH8 38 WH8 H21 H21 H 0 1 N N N N N N -1.809 23.608 8.982 -5.150 -1.364 0.389 H21 WH8 39 WH8 H22 H22 H 0 1 N N N N N N 0.869 24.030 7.604 -6.278 1.383 -0.316 H22 WH8 40 WH8 H23 H23 H 0 1 N N N N N N -0.146 25.270 8.416 -6.341 -0.062 -1.353 H23 WH8 41 WH8 H24 H24 H 0 1 N N N N N N 0.102 23.918 10.538 -7.647 -1.253 0.387 H24 WH8 42 WH8 H25 H25 H 0 1 N N N N N N 1.327 22.932 9.670 -7.583 0.193 1.424 H25 WH8 43 WH8 H26 H26 H 0 1 N N N N N N 2.289 23.709 13.327 -11.270 1.606 -0.322 H26 WH8 44 WH8 H27 H27 H 0 1 N N N N N N 0.969 24.744 12.684 -11.333 0.161 -1.358 H27 WH8 45 WH8 H28 H28 H 0 1 N N N N N N 1.213 23.090 12.028 -12.224 0.191 0.182 H28 WH8 46 WH8 H29 H29 H 0 1 N N N N N N -1.567 21.398 8.924 -3.782 1.272 -0.313 H29 WH8 47 WH8 H30 H30 H 0 1 N N N N N N 0.193 21.707 8.741 -3.845 -0.174 -1.350 H30 WH8 48 WH8 H31 H31 H 0 1 N N N N N N 2.660 24.995 9.291 -8.774 1.495 -0.319 H31 WH8 49 WH8 H32 H32 H 0 1 N N N N N N 1.462 25.912 10.266 -8.837 0.049 -1.356 H32 WH8 50 WH8 H33 H33 H 0 1 N N N N N N 3.411 23.769 11.135 -10.079 0.304 1.421 H33 WH8 51 WH8 H34 H34 H 0 1 N N N N N N 3.167 25.423 11.790 -10.142 -1.141 0.384 H34 WH8 52 WH8 O1 O2 O 0 1 N N N N N N 4.437 12.205 7.980 7.933 1.635 0.531 O1 WH8 53 WH8 H1 H1 H 0 1 N N N N N N 4.501 11.288 8.219 7.979 2.589 0.687 H1 WH8 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WH8 C15 C14 SING N N 1 WH8 C21 C20 SING N N 2 WH8 C21 C22 SING N N 3 WH8 C20 C19 SING N N 4 WH8 C19 C18 SING N N 5 WH8 C17 C18 SING N N 6 WH8 C17 S16 SING N N 7 WH8 C14 S16 SING N N 8 WH8 C14 C12 SING N N 9 WH8 C23 C22 SING N N 10 WH8 C23 C24 SING N N 11 WH8 C24 C25 SING N N 12 WH8 C12 C11 SING N N 13 WH8 C12 C13 SING N N 14 WH8 C11 O29 DOUB N N 15 WH8 C25 C26 SING N N 16 WH8 C26 C27 SING N N 17 WH8 C27 C28 SING N N 18 WH8 C12 H2 SING N N 19 WH8 C13 H3 SING N N 20 WH8 C13 H4 SING N N 21 WH8 C13 H5 SING N N 22 WH8 C21 H6 SING N N 23 WH8 C21 H7 SING N N 24 WH8 C14 H8 SING N N 25 WH8 C17 H9 SING N N 26 WH8 C17 H10 SING N N 27 WH8 C18 H11 SING N N 28 WH8 C18 H12 SING N N 29 WH8 C19 H13 SING N N 30 WH8 C19 H14 SING N N 31 WH8 C20 H15 SING N N 32 WH8 C20 H16 SING N N 33 WH8 C15 H17 SING N N 34 WH8 C15 H18 SING N N 35 WH8 C15 H19 SING N N 36 WH8 C23 H20 SING N N 37 WH8 C23 H21 SING N N 38 WH8 C24 H22 SING N N 39 WH8 C24 H23 SING N N 40 WH8 C25 H24 SING N N 41 WH8 C25 H25 SING N N 42 WH8 C28 H26 SING N N 43 WH8 C28 H27 SING N N 44 WH8 C28 H28 SING N N 45 WH8 C22 H29 SING N N 46 WH8 C22 H30 SING N N 47 WH8 C26 H31 SING N N 48 WH8 C26 H32 SING N N 49 WH8 C27 H33 SING N N 50 WH8 C27 H34 SING N N 51 WH8 C11 O1 SING N N 52 WH8 O1 H1 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WH8 InChI InChI 1.06 "InChI=1S/C17H34O2S/c1-4-5-6-7-8-9-10-11-12-13-14-20-16(3)15(2)17(18)19/h15-16H,4-14H2,1-3H3,(H,18,19)/t15-,16+/m1/s1" WH8 InChIKey InChI 1.06 YKCSGXHNGYGGRC-CVEARBPZSA-N WH8 SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCS[C@@H](C)[C@@H](C)C(O)=O" WH8 SMILES CACTVS 3.385 "CCCCCCCCCCCCS[CH](C)[CH](C)C(O)=O" WH8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCS[C@@H](C)[C@@H](C)C(=O)O" WH8 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCSC(C)C(C)C(=O)O" # _pdbx_chem_comp_identifier.comp_id WH8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{S})-3-dodecylsulfanyl-2-methyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WH8 "Create component" 2023-10-04 PDBE WH8 "Modify coordinates" 2023-10-11 PDBE WH8 "Modify PCM" 2024-09-27 PDBE WH8 "Initial release" 2024-10-09 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id WH8 _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C11 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #