data_WH9 # _chem_comp.id WH9 _chem_comp.name "5,6-dichloro-1-{1-[(4-chlorophenyl)methyl]piperidin-4-yl}-1,3-dihydro-2H-benzimidazol-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H18 Cl3 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-09 _chem_comp.pdbx_modified_date 2022-11-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 410.725 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WH9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8EFL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WH9 C01 C1 C 0 1 Y N N 95.321 108.443 118.685 4.913 -1.516 0.383 C01 WH9 1 WH9 C02 C2 C 0 1 Y N N 94.643 109.325 119.507 5.541 -0.292 0.523 C02 WH9 2 WH9 C03 C3 C 0 1 Y N N 96.503 107.882 119.125 3.566 -1.568 0.063 C03 WH9 3 WH9 C04 C4 C 0 1 Y N N 95.153 109.640 120.755 4.827 0.883 0.343 C04 WH9 4 WH9 C05 C5 C 0 1 Y N N 97.026 108.183 120.364 2.847 -0.384 -0.118 C05 WH9 5 WH9 C06 C6 C 0 1 Y N N 96.343 109.072 121.192 3.483 0.839 0.023 C06 WH9 6 WH9 C07 C7 C 0 1 N N N 98.343 106.791 119.369 1.465 -2.095 -0.434 C07 WH9 7 WH9 C08 C8 C 0 1 N N N 99.126 107.444 121.611 0.431 0.170 -0.698 C08 WH9 8 WH9 C09 C9 C 0 1 N N N 99.706 108.828 121.946 -0.108 -0.080 -2.109 C09 WH9 9 WH9 C10 C10 C 0 1 N N N 98.517 106.817 122.870 -0.690 -0.066 0.317 C10 WH9 10 WH9 C11 C11 C 0 1 N N N 100.764 108.698 123.049 -1.302 0.842 -2.364 C11 WH9 11 WH9 C12 C12 C 0 1 N N N 99.622 106.653 123.924 -1.868 0.855 -0.008 C12 WH9 12 WH9 C13 C13 C 0 1 N N N 101.324 107.824 125.312 -3.564 1.346 -1.664 C13 WH9 13 WH9 C14 C14 C 0 1 Y N N 103.553 107.098 124.266 -4.891 1.462 0.455 C14 WH9 14 WH9 C15 C15 C 0 1 Y N N 102.421 105.583 125.744 -5.512 -0.156 -1.198 C15 WH9 15 WH9 C16 C16 C 0 1 Y N N 103.438 104.654 125.558 -6.548 -0.585 -0.390 C16 WH9 16 WH9 C17 C17 C 0 1 Y N N 104.565 106.167 124.082 -5.924 1.031 1.265 C17 WH9 17 WH9 C18 C18 C 0 1 Y N N 102.441 106.810 125.070 -4.687 0.871 -0.778 C18 WH9 18 WH9 C19 C19 C 0 1 Y N N 104.507 104.948 124.732 -6.753 0.007 0.843 C19 WH9 19 WH9 N01 N1 N 0 1 N N N 97.330 107.032 118.554 2.671 -2.617 -0.142 N01 WH9 20 WH9 N02 N2 N 0 1 N N N 98.173 107.485 120.489 1.538 -0.751 -0.427 N02 WH9 21 WH9 N03 N3 N 0 1 N N N 100.272 107.956 124.243 -2.348 0.577 -1.368 N03 WH9 22 WH9 O01 O1 O 0 1 N N N 99.241 106.074 119.147 0.461 -2.741 -0.668 O01 WH9 23 WH9 CL1 CL1 CL 0 0 N N N 105.770 103.801 124.509 -8.051 -0.535 1.861 CL1 WH9 24 WH9 CL2 CL2 CL 0 0 N N N 94.298 110.737 121.759 5.625 2.414 0.521 CL2 WH9 25 WH9 CL3 CL3 CL 0 0 N N N 93.165 110.030 118.979 7.228 -0.226 0.925 CL3 WH9 26 WH9 H1 H1 H 0 1 N N N 94.930 108.196 117.709 5.472 -2.430 0.520 H1 WH9 27 WH9 H2 H2 H 0 1 N N N 96.736 109.318 122.167 2.930 1.756 -0.116 H2 WH9 28 WH9 H3 H3 H 0 1 N N N 99.970 106.806 121.310 0.784 1.198 -0.619 H3 WH9 29 WH9 H4 H4 H 0 1 N N N 100.169 109.257 121.045 0.675 0.128 -2.840 H4 WH9 30 WH9 H5 H5 H 0 1 N N N 98.897 109.488 122.292 -0.424 -1.119 -2.200 H5 WH9 31 WH9 H6 H6 H 0 1 N N N 97.725 107.471 123.263 -1.016 -1.105 0.265 H6 WH9 32 WH9 H7 H7 H 0 1 N N N 98.091 105.833 122.624 -0.324 0.151 1.321 H7 WH9 33 WH9 H8 H8 H 0 1 N N N 101.634 108.165 122.639 -0.982 1.881 -2.287 H8 WH9 34 WH9 H9 H9 H 0 1 N N N 101.068 109.707 123.364 -1.697 0.657 -3.363 H9 WH9 35 WH9 H10 H10 H 0 1 N N N 99.181 106.240 124.843 -2.674 0.680 0.704 H10 WH9 36 WH9 H11 H11 H 0 1 N N N 100.383 105.959 123.538 -1.545 1.894 0.058 H11 WH9 37 WH9 H12 H12 H 0 1 N N N 101.794 108.811 125.438 -3.840 1.201 -2.709 H12 WH9 38 WH9 H13 H13 H 0 1 N N N 100.815 107.539 126.244 -3.379 2.404 -1.481 H13 WH9 39 WH9 H14 H14 H 0 1 N N N 103.623 108.061 123.782 -4.247 2.265 0.782 H14 WH9 40 WH9 H15 H15 H 0 1 N N N 101.606 105.356 126.416 -5.351 -0.618 -2.161 H15 WH9 41 WH9 H16 H16 H 0 1 N N N 103.393 103.699 126.061 -7.198 -1.381 -0.722 H16 WH9 42 WH9 H17 H17 H 0 1 N N N 105.397 106.394 123.432 -6.084 1.493 2.228 H17 WH9 43 WH9 H18 H18 H 0 1 N N N 97.211 106.631 117.646 2.882 -3.562 -0.084 H18 WH9 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WH9 N01 C03 SING N N 1 WH9 N01 C07 SING N N 2 WH9 C01 C03 DOUB Y N 3 WH9 C01 C02 SING Y N 4 WH9 CL3 C02 SING N N 5 WH9 C03 C05 SING Y N 6 WH9 O01 C07 DOUB N N 7 WH9 C07 N02 SING N N 8 WH9 C02 C04 DOUB Y N 9 WH9 C05 N02 SING N N 10 WH9 C05 C06 DOUB Y N 11 WH9 N02 C08 SING N N 12 WH9 C04 C06 SING Y N 13 WH9 C04 CL2 SING N N 14 WH9 C08 C09 SING N N 15 WH9 C08 C10 SING N N 16 WH9 C09 C11 SING N N 17 WH9 C10 C12 SING N N 18 WH9 C11 N03 SING N N 19 WH9 C12 N03 SING N N 20 WH9 C17 C14 DOUB Y N 21 WH9 C17 C19 SING Y N 22 WH9 N03 C13 SING N N 23 WH9 C14 C18 SING Y N 24 WH9 CL1 C19 SING N N 25 WH9 C19 C16 DOUB Y N 26 WH9 C18 C13 SING N N 27 WH9 C18 C15 DOUB Y N 28 WH9 C16 C15 SING Y N 29 WH9 C01 H1 SING N N 30 WH9 C06 H2 SING N N 31 WH9 C08 H3 SING N N 32 WH9 C09 H4 SING N N 33 WH9 C09 H5 SING N N 34 WH9 C10 H6 SING N N 35 WH9 C10 H7 SING N N 36 WH9 C11 H8 SING N N 37 WH9 C11 H9 SING N N 38 WH9 C12 H10 SING N N 39 WH9 C12 H11 SING N N 40 WH9 C13 H12 SING N N 41 WH9 C13 H13 SING N N 42 WH9 C14 H14 SING N N 43 WH9 C15 H15 SING N N 44 WH9 C16 H16 SING N N 45 WH9 C17 H17 SING N N 46 WH9 N01 H18 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WH9 SMILES ACDLabs 12.01 "Clc1cc2NC(=O)N(C3CCN(Cc4ccc(Cl)cc4)CC3)c2cc1Cl" WH9 InChI InChI 1.06 "InChI=1S/C19H18Cl3N3O/c20-13-3-1-12(2-4-13)11-24-7-5-14(6-8-24)25-18-10-16(22)15(21)9-17(18)23-19(25)26/h1-4,9-10,14H,5-8,11H2,(H,23,26)" WH9 InChIKey InChI 1.06 LAGUDYUGRSQDKS-UHFFFAOYSA-N WH9 SMILES_CANONICAL CACTVS 3.385 "Clc1ccc(CN2CCC(CC2)N3C(=O)Nc4cc(Cl)c(Cl)cc34)cc1" WH9 SMILES CACTVS 3.385 "Clc1ccc(CN2CCC(CC2)N3C(=O)Nc4cc(Cl)c(Cl)cc34)cc1" WH9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CN2CCC(CC2)N3c4cc(c(cc4NC3=O)Cl)Cl)Cl" WH9 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CN2CCC(CC2)N3c4cc(c(cc4NC3=O)Cl)Cl)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WH9 "SYSTEMATIC NAME" ACDLabs 12.01 "5,6-dichloro-1-{1-[(4-chlorophenyl)methyl]piperidin-4-yl}-1,3-dihydro-2H-benzimidazol-2-one" WH9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5,6-bis(chloranyl)-3-[1-[(4-chlorophenyl)methyl]piperidin-4-yl]-1~{H}-benzimidazol-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WH9 "Create component" 2022-09-09 RCSB WH9 "Initial release" 2022-11-09 RCSB #