data_WI6 # _chem_comp.id WI6 _chem_comp.name "1,4,5,6-Tetrahydronicotinamide adenine dinucleotide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H31 N7 O14 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[[(2R,3S,4R,5R)-5-[(3S)-3-aminocarbonyl-3,6-dihydro-2H-pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2S,3R,4S,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-04 _chem_comp.pdbx_modified_date 2024-01-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 667.457 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WI6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QNP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag WI6 O7N O1 O 0 1 N N N 18.478 4.932 44.296 3.138 -4.517 -1.130 O7N WI6 1 N N N WI6 C7N C1 C 0 1 N N N 18.419 5.396 45.423 4.267 -4.915 -1.318 C7N WI6 2 N N N WI6 N7N N1 N 0 1 N N N 18.114 4.657 46.502 4.474 -6.060 -1.999 N7N WI6 3 N N N WI6 C3N C2 C 0 1 N N S 18.670 6.872 45.720 5.441 -4.127 -0.797 C3N WI6 4 N N N WI6 C2N C3 C 0 1 N N N 19.437 7.530 44.572 4.934 -2.880 -0.068 C2N WI6 5 N N N WI6 C4N C4 C 0 1 N N N 19.443 7.078 46.979 6.320 -3.719 -1.946 C4N WI6 6 N N N WI6 C5N C5 C 0 1 N N N 20.070 8.235 47.145 6.830 -2.531 -2.057 C5N WI6 7 N N N WI6 C6N C6 C 0 1 N N N 19.962 9.361 46.168 6.593 -1.436 -1.057 C6N WI6 8 N N N WI6 N1N N2 N 0 1 N N N 19.641 8.947 44.811 6.081 -1.997 0.199 N1N WI6 9 N N N WI6 "C1'A" C7 C 0 0 N N R 20.341 9.611 43.741 5.715 -0.930 1.141 "C1'A" WI6 10 N N N WI6 "O4'A" O2 O 0 0 N N N 21.667 9.891 44.120 4.751 -0.038 0.541 "O4'A" WI6 11 N N N WI6 "C2'A" C8 C 0 0 N N R 19.824 10.977 43.251 6.940 -0.040 1.447 "C2'A" WI6 12 N N N WI6 "O2'A" O3 O 0 0 N N N 18.657 10.906 42.486 7.547 -0.429 2.681 "O2'A" WI6 13 N N N WI6 "C3'A" C9 C 0 0 N N S 21.051 11.512 42.497 6.351 1.385 1.555 "C3'A" WI6 14 N N N WI6 "O3'A" O4 O 0 0 N N N 20.998 11.155 41.132 6.575 1.921 2.861 "O3'A" WI6 15 N N N WI6 "C4'A" C10 C 0 0 N N R 22.221 10.880 43.251 4.840 1.186 1.303 "C4'A" WI6 16 N N N WI6 "C5'A" C11 C 0 0 N N N 23.021 11.946 43.985 4.277 2.358 0.495 "C5'A" WI6 17 N N N WI6 "O5'A" O5 O 0 0 N N N 22.441 12.185 45.245 2.861 2.214 0.372 "O5'A" WI6 18 N N N WI6 PN P1 P 0 1 N N N 22.130 13.732 45.707 1.937 3.270 -0.417 PN WI6 19 N N N WI6 O1N O6 O 0 1 N N N 23.003 14.595 44.858 2.158 4.627 0.132 O1N WI6 20 N N N WI6 O2N O7 O 0 1 N N N 20.652 13.949 45.777 2.322 3.256 -1.981 O2N WI6 21 N N N WI6 O3 O8 O 0 1 N N N 22.750 13.619 47.228 0.389 2.866 -0.242 O3 WI6 22 N N N WI6 PA P2 P 0 1 N N N 24.027 14.456 47.840 -1.003 3.632 -0.499 PA WI6 23 N N N WI6 O2P O9 O 0 1 N N N 25.231 14.257 46.976 -0.951 4.326 -1.806 O2P WI6 24 N N N WI6 O1 O10 O 0 1 N N N 24.084 14.259 49.318 -1.246 4.711 0.671 O1P WI6 25 N N N WI6 "O5'" O11 O 0 1 N N N 23.426 15.970 47.626 -2.210 2.566 -0.506 "O5'" WI6 26 N N N WI6 H7N1 H1 H 0 1 N N N 17.923 3.681 46.402 3.718 -6.566 -2.338 H1 WI6 27 N N N WI6 H7N2 H2 H 0 1 N N N 18.078 5.083 47.406 5.378 -6.379 -2.150 H2 WI6 28 N N N WI6 H3N H3 H 0 1 N N N 17.697 7.375 45.817 6.013 -4.744 -0.104 H3 WI6 29 N N N WI6 H2N1 H4 H 0 1 N N N 18.865 7.403 43.641 4.208 -2.360 -0.693 H4 WI6 30 N N N WI6 H2N2 H5 H 0 1 N N N 20.417 7.040 44.470 4.468 -3.171 0.874 H5 WI6 31 N N N WI6 H4N H6 H 0 1 N N N 19.491 6.307 47.734 6.537 -4.448 -2.714 H6 WI6 32 N N N WI6 H5N H7 H 0 1 N N N 20.684 8.369 48.023 7.457 -2.319 -2.911 H7 WI6 33 N N N WI6 H6N1 H8 H 0 1 N N N 20.925 9.893 46.147 7.530 -0.914 -0.864 H8 WI6 34 N N N WI6 H6N2 H9 H 0 1 N N N 19.173 10.044 46.516 5.864 -0.732 -1.459 H9 WI6 35 N N N WI6 "H1'A" H11 H 0 1 N N N 20.356 8.940 42.870 5.316 -1.357 2.061 H11 WI6 36 N N N WI6 "H2'A" H12 H 0 1 N N N 19.658 11.615 44.132 7.664 -0.093 0.633 H12 WI6 37 N N N WI6 HO2A H13 H 0 1 N N N 17.948 10.568 43.020 8.322 0.098 2.921 H13 WI6 38 N N N WI6 "H3'A" H14 H 0 1 N N N 21.095 12.605 42.613 6.784 2.036 0.795 H14 WI6 39 N N N WI6 HO3A H15 H 0 1 N N N 20.253 11.578 40.722 7.507 2.065 3.073 H15 WI6 40 N N N WI6 "H4'A" H16 H 0 1 N N N 22.882 10.396 42.517 4.307 1.087 2.248 H16 WI6 41 N N N WI6 "H5'1" H17 H 0 1 N N N 24.057 11.600 44.118 4.504 3.293 1.006 H17 WI6 42 N N N WI6 "H5'2" H18 H 0 1 N N N 23.018 12.876 43.398 4.729 2.366 -0.497 H18 WI6 43 N N N WI6 HO2N H19 H 0 1 N N N 20.412 14.681 45.221 2.202 2.396 -2.408 H19 WI6 44 N N N WI6 HO2P H20 H 0 1 N N N 24.964 14.004 49.570 -1.292 4.326 1.557 H20 WI6 45 N N N WI6 "C5'" C12 C 0 1 N N N ? ? ? -3.560 2.921 -0.813 C1 WI6 46 N N N WI6 "C4'" C13 C 0 1 N N N ? ? ? -4.445 1.676 -0.728 C2 WI6 47 N N N WI6 "O4'" O12 O 0 1 N N N ? ? ? -4.521 1.197 0.632 O1 WI6 48 N N N WI6 "C1'" C14 C 0 1 N N N ? ? ? -5.711 0.396 0.729 C4 WI6 49 N N N WI6 "C2'" C15 C 0 1 N N N ? ? ? -6.695 0.907 -0.340 C5 WI6 50 N N N WI6 "C3'" C16 C 0 1 N N N ? ? ? -5.916 2.028 -1.069 C6 WI6 51 N N N WI6 N9A N3 N 0 1 Y N N ? ? ? -5.387 -1.010 0.477 N1 WI6 52 N N N WI6 C4A C17 C 0 1 Y N N ? ? ? -6.105 -2.098 0.905 C7 WI6 53 N N N WI6 C5A C18 C 0 1 Y N N ? ? ? -5.419 -3.227 0.428 C8 WI6 54 N N N WI6 N7A N4 N 0 1 Y N N ? ? ? -4.338 -2.779 -0.253 N2 WI6 55 N N N WI6 C8A C19 C 0 1 Y N N ? ? ? -4.320 -1.478 -0.230 C10 WI6 56 N N N WI6 C6A C20 C 0 1 Y N N ? ? ? -5.944 -4.497 0.726 C3 WI6 57 N N N WI6 N1A N5 N 0 1 Y N N ? ? ? -7.060 -4.568 1.443 N4 WI6 58 N N N WI6 C2A C22 C 0 1 Y N N ? ? ? -7.670 -3.477 1.869 C11 WI6 59 N N N WI6 N3A N6 N 0 1 Y N N ? ? ? -7.216 -2.269 1.615 N3 WI6 60 N N N WI6 "O2'" O13 O 0 1 N N N ? ? ? -7.033 -0.141 -1.251 O4 WI6 61 N N N WI6 "O3'" O14 O 0 1 N N N ? ? ? -6.266 3.313 -0.551 O2 WI6 62 N N N WI6 "H5'A" H10 H 0 1 N N N ? ? ? -3.911 3.666 -0.099 H10 WI6 63 N N N WI6 "H5'B" H21 H 0 1 N N N ? ? ? -3.607 3.333 -1.821 H21 WI6 64 N N N WI6 "H4'" H22 H 0 1 N N N ? ? ? -4.072 0.895 -1.390 H22 WI6 65 N N N WI6 "H1'" H23 H 0 1 N N N ? ? ? -6.150 0.506 1.721 H23 WI6 66 N N N WI6 "H2'" H24 H 0 1 N N N ? ? ? -7.593 1.310 0.129 H24 WI6 67 N N N WI6 "H3'" H25 H 0 1 N N N ? ? ? -6.087 1.985 -2.145 H25 WI6 68 N N N WI6 H8A H26 H 0 1 N N N ? ? ? -3.567 -0.860 -0.697 H26 WI6 69 N N N WI6 H2A H29 H 0 1 N N N ? ? ? -8.576 -3.581 2.449 H29 WI6 70 N N N WI6 "HO2'" H31 H 0 1 N N N ? ? ? -7.651 0.125 -1.945 H31 WI6 71 N N N WI6 "HO3'" H32 H 0 1 N N N ? ? ? -7.199 3.540 -0.660 H32 WI6 72 N N N WI6 N6A N7 N 0 1 N N N ? ? ? -5.312 -5.645 0.283 N5 WI6 73 N N N WI6 H6A1 H27 H 0 1 N N N ? ? ? -4.497 -5.580 -0.240 H27 WI6 74 N N N WI6 H6A2 H28 H 0 1 N N N ? ? ? -5.683 -6.516 0.495 H28 WI6 75 N N N # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WI6 "O3'A" "C3'A" SING N N 1 WI6 "O2'A" "C2'A" SING N N 2 WI6 "C3'A" "C4'A" SING N N 3 WI6 "C3'A" "C2'A" SING N N 4 WI6 "C4'A" "C5'A" SING N N 5 WI6 "C4'A" "O4'A" SING N N 6 WI6 "C2'A" "C1'A" SING N N 7 WI6 "C1'A" "O4'A" SING N N 8 WI6 "C1'A" N1N SING N N 9 WI6 "C5'A" "O5'A" SING N N 10 WI6 O7N C7N DOUB N N 11 WI6 C2N N1N SING N N 12 WI6 C2N C3N SING N N 13 WI6 N1N C6N SING N N 14 WI6 O1N PN DOUB N N 15 WI6 "O5'A" PN SING N N 16 WI6 C7N C3N SING N N 17 WI6 C7N N7N SING N N 18 WI6 PN O2N SING N N 19 WI6 PN O3 SING N N 20 WI6 C3N C4N SING N N 21 WI6 C6N C5N SING N N 22 WI6 O2P PA DOUB N N 23 WI6 C4N C5N DOUB N N 24 WI6 O3 PA SING N N 25 WI6 "O5'" PA SING N N 26 WI6 PA O1 SING N N 27 WI6 N7N H7N1 SING N N 28 WI6 N7N H7N2 SING N N 29 WI6 C3N H3N SING N N 30 WI6 C2N H2N1 SING N N 31 WI6 C2N H2N2 SING N N 32 WI6 C4N H4N SING N N 33 WI6 C5N H5N SING N N 34 WI6 C6N H6N1 SING N N 35 WI6 C6N H6N2 SING N N 36 WI6 "C1'A" "H1'A" SING N N 37 WI6 "C2'A" "H2'A" SING N N 38 WI6 "O2'A" HO2A SING N N 39 WI6 "C3'A" "H3'A" SING N N 40 WI6 "O3'A" HO3A SING N N 41 WI6 "C4'A" "H4'A" SING N N 42 WI6 "C5'A" "H5'1" SING N N 43 WI6 "C5'A" "H5'2" SING N N 44 WI6 O2N HO2N SING N N 45 WI6 O1 HO2P SING N N 46 WI6 "O5'" "C5'" SING N N 47 WI6 "C5'" "C4'" SING N N 48 WI6 "C4'" "O4'" SING N N 49 WI6 "O4'" "C1'" SING N N 50 WI6 "C1'" "C2'" SING N N 51 WI6 "C2'" "C3'" SING N N 52 WI6 "C3'" "C4'" SING N N 53 WI6 "C1'" N9A SING N N 54 WI6 N9A C4A SING Y N 55 WI6 C4A C5A DOUB Y N 56 WI6 C5A N7A SING Y N 57 WI6 N7A C8A DOUB Y N 58 WI6 C8A N9A SING Y N 59 WI6 C5A C6A SING Y N 60 WI6 C6A N1A DOUB Y N 61 WI6 N1A C2A SING Y N 62 WI6 C2A N3A DOUB Y N 63 WI6 N3A C4A SING Y N 64 WI6 "C2'" "O2'" SING N N 65 WI6 "C3'" "O3'" SING N N 66 WI6 "C5'" "H5'A" SING N N 67 WI6 "C5'" "H5'B" SING N N 68 WI6 "C4'" "H4'" SING N N 69 WI6 "C1'" "H1'" SING N N 70 WI6 "C2'" "H2'" SING N N 71 WI6 "C3'" "H3'" SING N N 72 WI6 C8A H8A SING N N 73 WI6 C2A H2A SING N N 74 WI6 "O2'" "HO2'" SING N N 75 WI6 "O3'" "HO3'" SING N N 76 WI6 C6A N6A SING N N 77 WI6 N6A H6A1 SING N N 78 WI6 N6A H6A2 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WI6 InChI InChI 1.06 "InChI=1S/C21H31N7O14P2/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(32)14(30)11(41-21)6-39-44(36,37)42-43(34,35)38-5-10-13(29)15(31)20(40-10)27-3-1-2-9(4-27)18(23)33/h1-2,7-11,13-16,20-21,29-32H,3-6H2,(H2,23,33)(H,34,35)(H,36,37)(H2,22,24,25)/t9-,10+,11?,13+,14?,15+,16?,20+,21?/m0/s1" WI6 InChIKey InChI 1.06 GFDCQHGWOHYWLP-XQYAFYQJSA-N WI6 SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@@H]1CN(CC=C1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OCC3OC(C(O)C3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O" WI6 SMILES CACTVS 3.385 "NC(=O)[CH]1CN(CC=C1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OCC3OC(C(O)C3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O" WI6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@H]([C@H]([C@@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N5CC=C[C@@H](C5)C(=O)N)O)O)O)O)N" WI6 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N5CC=CC(C5)C(=O)N)O)O)O)O)N" # _pdbx_chem_comp_identifier.comp_id WI6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{R})-5-[(3~{S})-3-aminocarbonyl-3,6-dihydro-2~{H}-pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{S},3~{R},4~{S},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WI6 "Create component" 2023-10-04 PDBE WI6 "Modify name" 2023-11-11 PDBE WI6 "Initial release" 2024-01-17 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id WI6 _pdbx_chem_comp_synonyms.name "[[(2R,3S,4R,5R)-5-[(3S)-3-aminocarbonyl-3,6-dihydro-2H-pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2S,3R,4S,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #